Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013132

Physical Location & Seq

Genomic Coordinates Reverse (-)

25371904 .. 25373904

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTGGGAGCGACTGTAGTTAGTAAATGGACTCCCCTATGTGTGGCTTCGCCGCCGGAGAGAAACTCGGCAAGTCTCAATCCACACTGTTCTCCAGCCAGGGTTAATTTTAGAACAGCGTTGGCCGCATTTCGTCCTCAGTTCCGTCTTTTCTCTCGCAATTCCGCGTCTCGCCGCCGTCTTCGCGCTTCCAGCTCCGCCGAATCGGGAATCTTCCTTCCTCACCTTGTAGCTTCTATGGAGGACGTTGAGGAGACTTACATTATGGTGAAACCTGATGGCATACAACGAGGCCTTGTAGGAGAAATCATTTCTCGCTTTGAGAAAAAGGGGTTTAAACTTATTGGGCTCAAGATGTTTCAGTGCCCAAAAGAATTGGCTGAGGAGCATTATAAGGATCTTAGTGCTAAATCATTCTTTCCTAACCTGATTGAGTACATCACTTCAGGTCCAGTTGTGTGTATGGCTTGGGAAGGTGTTGGTGTTGTTGCTTCAGCCAGGAAGCTAATAGGGAAAACAGATCCGCTTCAAGCTGAACCTGGTACTATAAGAGGAGATCTTGCTGTGCAAACCGGAAGGAACATTGTGCATGGTAGTGACAGCCCTGAAAACGGCAAGCGTGAGATTGGTCTGTGGTTCAAAGAGGGCGAGCTATGCAAGTGGGATTCGGCTCTAGCTACATGGCTAAGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009636 GO:0009639 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009941 GO:0009987 GO:0010017 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0023052 GO:0031967 GO:0031975 GO:0032870 GO:0034641 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0055086 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071704 GO:0104004 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

231

Amino Acids

25.55

Weight (kDa)

9.14

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	84 - 217	2.2e-55	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63310
fragaria_vesca	FvH4_5g07600
malus_domestica	MD06G1149000.v1.1 MD14G1162900.v1.1
prunus_persica	Prupe.5G156200_v2.0.a1 Prupe.5G156200_v2.0.a1
pyrus_communis	pycom06g13840 pycom14g13570
rosa_chinensis	RchiOBHm_Chr7g0190891
rosa_laevigata	RLG00000004488
rosa_multiflora	Rmu_sc0006903.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264220
rosa_rugosa	Rorug06G0507800
rosa_samantha	Rh7AG114500 Rh7BG116900 Rh7CG120000 Rh7DG118300
rosa_wichuraiana	Rw7G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AccII	CGCG	2 cut(s)	167, 186
AciI	CCGC	6 cut(s)	53, 126, 165, 175, 198, 524
AclWI	GGATC	2 cut(s)	405, 515
AcoI	YGGCCR	1 cut(s)	123
AcuI	CTGAAG	2 cut(s)	429, 477
AfaI	GTAC	2 cut(s)	437, 544
AfiI	CCNNNNNNNGG	2 cut(s)	43, 611
AgsI	TTSAA	2 cut(s)	530, 640
AjnI	CCWGG	3 cut(s)	98, 497, 538
AluBI	AGCT	6 cut(s)	195, 233, 505, 533, 652, 677
AluI	AGCT	6 cut(s)	195, 233, 505, 533, 652, 677
Alw26I	GTCTC	3 cut(s)	80, 174, 248
AlwI	GGATC	2 cut(s)	405, 515
AoxI	GGCC	2 cut(s)	123, 292
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	2 cut(s)	215, 280
AvaII	GGWCC	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	381
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	2 cut(s)	162, 628
BciT130I	CCWGG	3 cut(s)	100, 499, 540
BcoDI	GTCTC	3 cut(s)	80, 174, 248
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	1 cut(s)	15
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	3 cut(s)	53, 126, 175
BlsI	GCNGC	3 cut(s)	54, 127, 176
Bme1390I	CCNGG	3 cut(s)	100, 499, 540
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	449
BmrFI	CCNGG	3 cut(s)	100, 499, 540
BpiI	GAAGAC	1 cut(s)	173
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	2 cut(s)	381, 686
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	572
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 611
Bse1I	ACTGG	1 cut(s)	452
BseBI	CCWGG	3 cut(s)	100, 499, 540
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	43, 611
BseMII	CTCAG	2 cut(s)	152, 372
BseNI	ACTGG	1 cut(s)	452
BseRI	GAGGAG	3 cut(s)	266, 398, 567
BseSI	GKGCMC	1 cut(s)	368
Bsh1236I	CGCG	2 cut(s)	167, 186
BshFI	GGCC	2 cut(s)	125, 294
BsiSI	CCGG	2 cut(s)	56, 573
BslI	CCNNNNNNNGG	2 cut(s)	43, 611
BsmAI	GTCTC	3 cut(s)	80, 174, 248
BsmBI	CGTCTC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	125, 294
Bsp1286I	GDGCHC	2 cut(s)	351, 368
Bsp143I	GATC	3 cut(s)	397, 520, 556
BspACI	CCGC	6 cut(s)	53, 126, 165, 175, 198, 524
BspANI	GGCC	2 cut(s)	125, 294
BspCNI	CTCAG	2 cut(s)	151, 373
BspFNI	CGCG	2 cut(s)	167, 186
BspPI	GGATC	2 cut(s)	405, 515
BsrI	ACTGG	1 cut(s)	452
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	397, 520, 556
Bst2UI	CCWGG	3 cut(s)	100, 499, 540
Bst4CI	ACNGT	2 cut(s)	16, 89
BstC8I	GCNNGC	2 cut(s)	617, 650
BstDEI	CTNAG	4 cut(s)	138, 381, 401, 686
BstFNI	CGCG	2 cut(s)	167, 186
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	3 cut(s)	400, 523, 559
BstMAI	GTCTC	3 cut(s)	80, 174, 248
BstMBI	GATC	3 cut(s)	397, 520, 556
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 183, 192, 654
BstNI	CCWGG	3 cut(s)	100, 499, 540
BstSCI	CCNGG	3 cut(s)	98, 497, 538
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	2 cut(s)	167, 186
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	3 cut(s)	397, 520, 556
BstYI	RGATCY	3 cut(s)	397, 520, 556
BsuRI	GGCC	2 cut(s)	125, 294
BtsIMutI	CAGTG	2 cut(s)	85, 368
Cac8I	GCNNGC	2 cut(s)	617, 650
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	449
CseI	GACGC	1 cut(s)	156
CsiI	ACCWGGT	1 cut(s)	538
Csp6I	GTAC	2 cut(s)	436, 543
CviAII	CATG	2 cut(s)	590, 681
CviQI	GTAC	2 cut(s)	436, 543
DdeI	CTNAG	4 cut(s)	138, 381, 401, 686
DpnI	GATC	3 cut(s)	399, 522, 558
DpnII	GATC	3 cut(s)	397, 520, 556
DraI	TTTAAA	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	187
Eco147I	AGGCCT	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	429, 477
EcoRII	CCWGG	3 cut(s)	98, 497, 538
EcoT38I	GRGCYC	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	593, 684
FatI	CATG	2 cut(s)	589, 680
Fnu4HI	GCNGC	3 cut(s)	53, 126, 175
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	3 cut(s)	53, 126, 175
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	3 cut(s)	53, 126, 175
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	125, 294
HapII	CCGG	2 cut(s)	56, 573
HgaI	GACGC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	593, 684
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	4 cut(s)	31, 203, 210, 665
HpaII	CCGG	2 cut(s)	56, 573
HphI	GGTGA	2 cut(s)	215, 280
Hpy188III	TCNNGA	2 cut(s)	207, 352
HpyAV	CCTTC	3 cut(s)	227, 467, 570
HpyCH4III	ACNGT	2 cut(s)	16, 89
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	568, 589, 657
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 183, 192, 654
HpyF3I	CTNAG	4 cut(s)	138, 381, 401, 686
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	593, 684
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	397, 520, 556
LmnI	GCTCC	3 cut(s)	8, 200, 385
MabI	ACCWGGT	1 cut(s)	538
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	3 cut(s)	399, 522, 558
MboI	GATC	3 cut(s)	397, 520, 556
MboII	GAAGA	2 cut(s)	173, 205
MflI	RGATCY	3 cut(s)	397, 520, 556
MhlI	GDGCHC	2 cut(s)	351, 368
MluCI	AATT	3 cut(s)	106, 160, 374
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	8 cut(s)	147, 231, 235, 244, 284, 376, 545, 637
MseI	TTAA	2 cut(s)	105, 336
MslI	CAYNNNNRTG	2 cut(s)	266, 594
MspI	CCGG	2 cut(s)	56, 573
MspR9I	CCNGG	3 cut(s)	100, 499, 540
MssI	GTTTAAAC	1 cut(s)	337
MvaI	CCWGG	3 cut(s)	100, 499, 540
MvnI	CGCG	2 cut(s)	167, 186
MwoI	GCNNNNNNNGC	4 cut(s)	125, 183, 192, 654
NdeII	GATC	3 cut(s)	397, 520, 556
NlaIII	CATG	2 cut(s)	593, 684
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	596
PceI	AGGCCT	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	203, 210, 665
PkrI	GCNGC	3 cut(s)	54, 127, 176
PleI	GAGTC	1 cut(s)	25
PmeI	GTTTAAAC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	25
PsiI	TTATAA	1 cut(s)	393
Psp6I	CCWGG	3 cut(s)	98, 497, 538
PspGI	CCWGG	3 cut(s)	98, 497, 538
PspPI	GGNCC	1 cut(s)	449
PsuI	RGATCY	3 cut(s)	397, 520, 556
RsaI	GTAC	2 cut(s)	437, 544
RsaNI	GTAC	2 cut(s)	436, 543
RseI	CAYNNNNRTG	2 cut(s)	266, 594
SaqAI	TTAA	2 cut(s)	105, 336
SatI	GCNGC	3 cut(s)	53, 126, 175
Sau3AI	GATC	3 cut(s)	397, 520, 556
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	3 cut(s)	100, 499, 540
SduI	GDGCHC	2 cut(s)	351, 368
SexAI	ACCWGGT	1 cut(s)	538
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	2 cut(s)	266, 594
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	106, 160, 374
SseBI	AGGCCT	1 cut(s)	294
SsiI	CCGC	6 cut(s)	53, 126, 165, 175, 198, 524
SspMI	CTAG	1 cut(s)	674
StuI	AGGCCT	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	98, 497, 538
TaaI	ACNGT	2 cut(s)	16, 89
TaiI	ACGT	1 cut(s)	249
TasI	AATT	3 cut(s)	106, 160, 374
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	3 cut(s)	55, 128, 177
TfiI	GAWTC	3 cut(s)	203, 210, 665
Tru1I	TTAA	2 cut(s)	105, 336
Tru9I	TTAA	2 cut(s)	105, 336
TscAI	CASTG	2 cut(s)	92, 368
TseFI	GTSAC	1 cut(s)	596
Tsp45I	GTSAC	1 cut(s)	596
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	92, 368
VpaK11BI	GGWCC	1 cut(s)	449
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.