Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013132

Physical Location & Seq

Genomic Coordinates Forward (+)

29175072 .. 29177261

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1149000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAAACCGTGGCCGTGTTTGGTGGAGCAAGTCCAAGCTTTCCCTCATCCCATCAAAGCAGAAGAACCTGCAGCAGCTTACCCTCCGCCCACCACAACCCTAACCTACGTGCCCACCACCACCACCACCACCACGACGAACTATCTGCATTCCCTTCAAGTCTCCATCTTTTCTCATATCTCCCGGCTCGTCCCCATGCCAGAACCCTCGCCAAACCTCGCATCTTTCTTCCCCACTTGGTTGCTTCACTGGAACAAGTTGATGAGACGTACATAATGGTGAAGCCTGATGGAGTTCAACGTGGCCTTGTTGGAGAGATAATCTCAAGGTTTGAAAAGAAGGGATTTAAGCTGACTGGCTTGAAGCTCTTCCAGTGCCCCCAAGATTTGGCAGAGGAGCATTATAAGGATCTCAAGGGAAAGTCATTCTTCCCCAAATTGATAGACTACATTGTATCGGGCCCCGTTGTGTGCATGGCATGGGAGGGTGTTGGCGTTGTCGCTGCAGCACGTAAGTTGATTGGGGCCACAAATCCTCTACAAGCTGAACCGGGAACTATAAGAGGGGATCTTGCTGTTCAAACAGGAAGGAACGTTGTTCATGGGAGTGACAGCCCTGAAAACGGAAAGCGCGAAATAGCTCTCTGGTTCAAAGAAGGTGAATTATGTCAGTGGACACCAGTTCAAGCACCATGGTTAAGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009636 GO:0009639 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009941 GO:0009987 GO:0010017 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0023052 GO:0031967 GO:0031975 GO:0032870 GO:0034641 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0055086 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071704 GO:0104004 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

236

Amino Acids

26.08

Weight (kDa)

8.67

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	89 - 221	9.3e-55	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63310
fragaria_vesca	FvH4_5g07600
malus_domestica	MD06G1149000.v1.1 MD14G1162900.v1.1
prunus_persica	Prupe.5G156200_v2.0.a1 Prupe.5G156200_v2.0.a1
pyrus_communis	pycom06g13840 pycom14g13570
rosa_chinensis	RchiOBHm_Chr7g0190891
rosa_laevigata	RLG00000004488
rosa_multiflora	Rmu_sc0006903.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264220
rosa_rugosa	Rorug06G0507800
rosa_samantha	Rh7AG114500 Rh7BG116900 Rh7CG120000 Rh7DG118300
rosa_wichuraiana	Rw7G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	388
AccII	CGCG	1 cut(s)	633
AciI	CCGC	1 cut(s)	87
AclI	AACGTT	1 cut(s)	594
AclWI	GGATC	2 cut(s)	417, 576
AcoI	YGGCCR	1 cut(s)	12
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	388, 623
AgsI	TTSAA	7 cut(s)	159, 299, 335, 364, 581, 652, 686
AluBI	AGCT	6 cut(s)	39, 78, 352, 367, 545, 641
AluI	AGCT	6 cut(s)	39, 78, 352, 367, 545, 641
Alw26I	GTCTC	2 cut(s)	167, 260
AlwI	GGATC	2 cut(s)	417, 576
AoxI	GGCC	4 cut(s)	12, 304, 460, 525
ApaI	GGGCCC	1 cut(s)	464
ApeKI	GCWGC	4 cut(s)	72, 75, 503, 506
Asp700I	GAANNNNTTC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	3 cut(s)	460, 461, 525
AsuC2I	CCSGG	2 cut(s)	185, 552
AsuHPI	GGTGA	2 cut(s)	292, 671
BaeGI	GKGCMC	3 cut(s)	115, 380, 464
BanII	GRGCYC	1 cut(s)	464
BbvI	GCAGC	4 cut(s)	84, 87, 490, 518
BccI	CCATC	3 cut(s)	60, 174, 284
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BcnI	CCSGG	2 cut(s)	185, 552
BcoDI	GTCTC	2 cut(s)	167, 260
BfmI	CTRYAG	2 cut(s)	70, 504
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	4 cut(s)	73, 76, 504, 507
BlsI	GCNGC	4 cut(s)	74, 77, 505, 508
Bme1390I	CCNGG	2 cut(s)	185, 552
BmgT120I	GGNCC	3 cut(s)	460, 461, 525
BmiI	GGNNCC	3 cut(s)	462, 463, 526
BmrFI	CCNGG	2 cut(s)	185, 552
BmsI	GCATC	1 cut(s)	231
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpuEI	CTTGAG	2 cut(s)	310, 398
BpuMI	CCSGG	2 cut(s)	185, 552
BsaAI	YACGTR	2 cut(s)	110, 512
BsaJI	CCNNGG	2 cut(s)	9, 692
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 623
Bse1I	ACTGG	4 cut(s)	255, 361, 373, 680
BseDI	CCNNGG	2 cut(s)	9, 692
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	388, 623
BseNI	ACTGG	4 cut(s)	255, 361, 373, 680
BseRI	GAGGAG	1 cut(s)	410
BseSI	GKGCMC	3 cut(s)	115, 380, 464
BseXI	GCAGC	4 cut(s)	84, 87, 490, 518
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	4 cut(s)	14, 306, 462, 527
BsiSI	CCGG	2 cut(s)	185, 551
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	388, 623
BsmAI	GTCTC	2 cut(s)	167, 260
BsmBI	CGTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	4 cut(s)	14, 306, 462, 527
Bsp120I	GGGCCC	1 cut(s)	460
Bsp1286I	GDGCHC	3 cut(s)	115, 380, 464
Bsp143I	GATC	2 cut(s)	409, 568
Bsp19I	CCATGG	1 cut(s)	692
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	4 cut(s)	14, 306, 462, 527
BspFNI	CGCG	1 cut(s)	633
BspLI	GGNNCC	3 cut(s)	462, 463, 526
BspMAI	CTGCAG	2 cut(s)	74, 508
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	2 cut(s)	417, 576
BspQI	GCTCTTC	1 cut(s)	374
BsrI	ACTGG	4 cut(s)	255, 361, 373, 680
BssECI	CCNNGG	2 cut(s)	9, 692
BssMI	GATC	2 cut(s)	409, 568
BssT1I	CCWWGG	1 cut(s)	692
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	374
BstBAI	YACGTR	2 cut(s)	110, 512
BstDSI	CCRYGG	2 cut(s)	9, 692
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	633
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	2 cut(s)	412, 571
BstMAI	GTCTC	2 cut(s)	167, 260
BstMBI	GATC	2 cut(s)	409, 568
BstSCI	CCNGG	2 cut(s)	183, 550
BstSFI	CTRYAG	2 cut(s)	70, 504
BstSLI	GKGCMC	3 cut(s)	115, 380, 464
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	4 cut(s)	84, 87, 490, 518
BstX2I	RGATCY	2 cut(s)	409, 568
BstYI	RGATCY	2 cut(s)	409, 568
BsuRI	GGCC	4 cut(s)	14, 306, 462, 527
BtgI	CCRYGG	2 cut(s)	9, 692
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	3 cut(s)	248, 380, 677
BveI	ACCTGC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	633
Cfr13I	GGNCC	3 cut(s)	460, 461, 525
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	5 cut(s)	197, 475, 480, 602, 693
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	2 cut(s)	411, 570
DpnII	GATC	2 cut(s)	409, 568
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
EciI	GGCGGA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	692
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	692
Esp3I	CGTCTC	1 cut(s)	260
FaeI	CATG	5 cut(s)	200, 478, 483, 605, 696
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	5 cut(s)	196, 474, 479, 601, 692
Fnu4HI	GCNGC	4 cut(s)	73, 76, 504, 507
FokI	GGATG	1 cut(s)	34
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	4 cut(s)	73, 76, 504, 507
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	4 cut(s)	73, 76, 504, 507
HaeIII	GGCC	4 cut(s)	14, 306, 462, 527
HapII	CCGG	2 cut(s)	185, 551
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	5 cut(s)	200, 478, 483, 605, 696
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HindIII	AAGCTT	1 cut(s)	37
HpaII	CCGG	2 cut(s)	185, 551
HphI	GGTGA	2 cut(s)	292, 671
Hpy166II	GTNNAC	1 cut(s)	675
Hpy8I	GTNNAC	1 cut(s)	675
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	4 cut(s)	165, 334, 582, 650
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	5 cut(s)	109, 269, 301, 511, 594
HpyCH4V	TGCA	4 cut(s)	72, 149, 474, 506
HpySE526I	ACGT	5 cut(s)	109, 269, 301, 511, 594
Hsp92II	CATG	5 cut(s)	200, 478, 483, 605, 696
HspAI	GCGC	1 cut(s)	631
Kzo9I	GATC	2 cut(s)	409, 568
LguI	GCTCTTC	1 cut(s)	374
LmnI	GCTCC	2 cut(s)	26, 397
Lsp1109I	GCAGC	4 cut(s)	84, 87, 490, 518
LweI	GCATC	1 cut(s)	231
MaeII	ACGT	5 cut(s)	109, 269, 301, 511, 594
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	2 cut(s)	411, 570
MboI	GATC	2 cut(s)	409, 568
MboII	GAAGA	4 cut(s)	75, 221, 361, 421
MflI	RGATCY	2 cut(s)	409, 568
MhlI	GDGCHC	3 cut(s)	115, 380, 464
MluCI	AATT	2 cut(s)	437, 662
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	8 cut(s)	55, 94, 218, 228, 388, 478, 546, 557
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	2 cut(s)	348, 698
MslI	CAYNNNNRTG	2 cut(s)	278, 606
MspI	CCGG	2 cut(s)	185, 551
MspR9I	CCNGG	2 cut(s)	185, 552
Mva1269I	GAATGC	1 cut(s)	149
MvnI	CGCG	1 cut(s)	633
NciI	CCSGG	2 cut(s)	185, 552
NcoI	CCATGG	1 cut(s)	692
NdeII	GATC	2 cut(s)	409, 568
NlaIII	CATG	5 cut(s)	200, 478, 483, 605, 696
NlaIV	GGNNCC	3 cut(s)	462, 463, 526
NmuCI	GTSAC	1 cut(s)	608
PciSI	GCTCTTC	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PctI	GAATGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	388
PkrI	GCNGC	4 cut(s)	74, 77, 505, 508
Ppu21I	YACGTR	2 cut(s)	110, 512
PsiI	TTATAA	1 cut(s)	405
Psp1406I	AACGTT	1 cut(s)	594
PspN4I	GGNNCC	3 cut(s)	462, 463, 526
PspOMI	GGGCCC	1 cut(s)	460
PspPI	GGNCC	3 cut(s)	460, 461, 525
PstI	CTGCAG	2 cut(s)	74, 508
PsuI	RGATCY	2 cut(s)	409, 568
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	2 cut(s)	278, 606
SapI	GCTCTTC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	348, 698
SatI	GCNGC	4 cut(s)	73, 76, 504, 507
Sau3AI	GATC	2 cut(s)	409, 568
Sau96I	GGNCC	3 cut(s)	460, 461, 525
ScrFI	CCNGG	2 cut(s)	185, 552
SduI	GDGCHC	3 cut(s)	115, 380, 464
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	2 cut(s)	70, 504
SmiMI	CAYNNNNRTG	2 cut(s)	278, 606
SmlI	CTYRAG	2 cut(s)	325, 413
SmoI	CTYRAG	2 cut(s)	325, 413
Sse9I	AATT	2 cut(s)	437, 662
SsiI	CCGC	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	183, 550
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	5 cut(s)	112, 272, 304, 514, 597
TasI	AATT	2 cut(s)	437, 662
Tru1I	TTAA	2 cut(s)	348, 698
Tru9I	TTAA	2 cut(s)	348, 698
TscAI	CASTG	3 cut(s)	255, 380, 677
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	4 cut(s)	72, 75, 503, 506
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	1 cut(s)	590
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	3 cut(s)	255, 380, 677
Van91I	CCANNNNNTGG	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.