Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013132

Physical Location & Seq

Genomic Coordinates Forward (+)

8737757 .. 8741885

Gene Structure 4129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG116900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAAGACCGTGGCAGTGTTTGGCGGAGCAAGTCCGAGTTTTTCCTCATCCCTTCAACGCTGTTCTTCATCAACCCAGAAAACAAGTCCCACCTGCTTATCCTACGCCCACCCCAACTCTAACCTGCGCACCACTCACCACAAGCTTGCAGCATTCCCTTCAAAGTCCCATCTTTTTTCCTATTTCCAACCTCGTCCTCATGCTAAAACCCCCGCCAAACCTCGCATCTTCCTCCCACACTTGGTTGCTTCCCTGGAACAGGTTGAGGAGACATACATTATGGTGAAGCCTGATGGTGTTCAACGTGGCCTTGTTGGAGAAATAATCTCAAGGTTTGAAAAGAAGGGATTTAAACTGACAGGCTTGAAGCTCTTCCAGTGCCCCAGAGATTTGGCAGAGGAGCATTATAAGGATCTCAAGTCAAAGTCCTTCTTCCCTAAGTTGATAGAGTACATTGTATCTGGCCCAGTTGTGTGCATGGCATGGGAGGGTGTTGGCGTTGTTGCATCAGCACGCAAGTTGATAGGGTCTACAGACCCTCTTCAAGCTGAACCAGGAACTATTAGAGGAGATCTTGCTGTTCAAACAGGAAGGTTGGGCCCTTTACCCTATGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009636 GO:0009639 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009941 GO:0009987 GO:0010017 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0023052 GO:0031967 GO:0031975 GO:0032870 GO:0034641 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0055086 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071704 GO:0104004 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

206

Amino Acids

22.64

Weight (kDa)

9.56

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	89 - 197	5e-41	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63310
fragaria_vesca	FvH4_5g07600
malus_domestica	MD06G1149000.v1.1 MD14G1162900.v1.1
prunus_persica	Prupe.5G156200_v2.0.a1 Prupe.5G156200_v2.0.a1
pyrus_communis	pycom06g13840 pycom14g13570
rosa_chinensis	RchiOBHm_Chr7g0190891
rosa_laevigata	RLG00000004488
rosa_multiflora	Rmu_sc0006903.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264220
rosa_rugosa	Rorug06G0507800
rosa_samantha	Rh7AG114500 Rh7BG116900 Rh7CG120000 Rh7DG118300
rosa_wichuraiana	Rw7G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AarI	CACCTGC	1 cut(s)	101
Acc16I	TGCGCA	1 cut(s)	128
Acc36I	ACCTGC	2 cut(s)	101, 132
AccI	GTMKAC	1 cut(s)	530
AciI	CCGC	2 cut(s)	24, 213
AclWI	GGATC	1 cut(s)	420
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	2 cut(s)	241, 259
AgsI	TTSAA	7 cut(s)	56, 162, 302, 338, 367, 545, 584
AjnI	CCWGG	2 cut(s)	252, 553
AluBI	AGCT	3 cut(s)	145, 370, 548
AluI	AGCT	3 cut(s)	145, 370, 548
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	420
AoxI	GGCC	3 cut(s)	307, 463, 598
ApaI	GGGCCC	1 cut(s)	602
ApeKI	GCWGC	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	3 cut(s)	464, 598, 599
AsuHPI	GGTGA	2 cut(s)	128, 295
BaeGI	GKGCMC	2 cut(s)	383, 602
BanII	GRGCYC	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	2 cut(s)	177, 287
BciT130I	CCWGG	2 cut(s)	254, 555
BcoDI	GTCTC	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	531
BfuAI	ACCTGC	2 cut(s)	101, 132
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	2 cut(s)	254, 555
BmgT120I	GGNCC	3 cut(s)	464, 598, 599
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	2 cut(s)	254, 555
BmrI	ACTGGG	1 cut(s)	461
BmsI	GCATC	2 cut(s)	234, 515
BmuI	ACTGGG	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	2 cut(s)	313, 401
BsaJI	CCNNGG	2 cut(s)	9, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 259
Bse1I	ACTGG	2 cut(s)	376, 467
BseBI	CCWGG	2 cut(s)	254, 555
BseDI	CCNNGG	2 cut(s)	9, 252
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	241, 259
BseNI	ACTGG	2 cut(s)	376, 467
BseRI	GAGGAG	3 cut(s)	281, 413, 582
BseSI	GKGCMC	2 cut(s)	383, 602
BseXI	GCAGC	1 cut(s)	161
BshFI	GGCC	3 cut(s)	309, 465, 600
BslFI	GGGAC	2 cut(s)	72, 151
BslI	CCNNNNNNNGG	2 cut(s)	241, 259
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	2 cut(s)	72, 151
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	309, 465, 600
Bsp120I	GGGCCC	1 cut(s)	598
Bsp1286I	GDGCHC	2 cut(s)	383, 602
Bsp143I	GATC	2 cut(s)	412, 571
BspACI	CCGC	2 cut(s)	24, 213
BspANI	GGCC	3 cut(s)	309, 465, 600
BspLI	GGNNCC	1 cut(s)	600
BspMI	ACCTGC	2 cut(s)	101, 132
BspPI	GGATC	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	376, 467
BssECI	CCNNGG	2 cut(s)	9, 252
BssMI	GATC	2 cut(s)	412, 571
Bst2UI	CCWGG	2 cut(s)	254, 555
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	2 cut(s)	377, 546
BstC8I	GCNNGC	2 cut(s)	147, 514
BstDEI	CTNAG	1 cut(s)	438
BstDSI	CCRYGG	1 cut(s)	9
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	415, 574
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	2 cut(s)	412, 571
BstNI	CCWGG	2 cut(s)	254, 555
BstSCI	CCNGG	2 cut(s)	252, 553
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	2 cut(s)	383, 602
BstV1I	GCAGC	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	412, 571
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	2 cut(s)	412, 571
BsuRI	GGCC	3 cut(s)	309, 465, 600
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 383
BveI	ACCTGC	2 cut(s)	101, 132
Cac8I	GCNNGC	2 cut(s)	147, 514
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	3 cut(s)	464, 598, 599
Csp6I	GTAC	1 cut(s)	451
CviAII	CATG	3 cut(s)	200, 478, 483
CviJI	RGCY	8 cut(s)	145, 289, 309, 363, 370, 465, 548, 600
CviKI_1	RGCY	8 cut(s)	145, 289, 309, 363, 370, 465, 548, 600
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	2 cut(s)	414, 573
DpnII	GATC	2 cut(s)	412, 571
DraI	TTTAAA	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	377, 546
EarI	CTCTTC	2 cut(s)	377, 546
EciI	GGCGGA	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	602
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	252, 553
EcoT38I	GRGCYC	1 cut(s)	602
FaeI	CATG	3 cut(s)	203, 481, 486
FaiI	YATR	7 cut(s)	201, 274, 281, 408, 479, 484, 612
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	2 cut(s)	72, 151
FatI	CATG	3 cut(s)	199, 477, 482
FauI	CCCGC	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	530
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	34
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	1 cut(s)	150
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	309, 465, 600
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	203, 481, 486
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	143
HphI	GGTGA	2 cut(s)	128, 295
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	1 cut(s)	36
Hpy8I	GTNNAC	1 cut(s)	531
HpyAV	CCTTC	5 cut(s)	62, 168, 337, 439, 585
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	3 cut(s)	149, 477, 506
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	3 cut(s)	203, 481, 486
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	412, 571
LguI	GCTCTTC	1 cut(s)	377
LmnI	GCTCC	2 cut(s)	26, 400
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	2 cut(s)	234, 515
MaeII	ACGT	1 cut(s)	304
MalI	GATC	2 cut(s)	414, 573
MboI	GATC	2 cut(s)	412, 571
MboII	GAAGA	6 cut(s)	16, 57, 220, 364, 424, 533
MflI	RGATCY	2 cut(s)	412, 571
MhlI	GDGCHC	2 cut(s)	383, 602
MmeI	TCCRAC	2 cut(s)	211, 295
MroXI	GAANNNNTTC	1 cut(s)	371
MseI	TTAA	2 cut(s)	351, 619
MslI	CAYNNNNRTG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	254, 555
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	2 cut(s)	254, 555
NdeII	GATC	2 cut(s)	412, 571
NlaIII	CATG	3 cut(s)	203, 481, 486
NlaIV	GGNNCC	1 cut(s)	600
NsbI	TGCGCA	1 cut(s)	128
PaqCI	CACCTGC	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	377
PctI	GAATGC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	151
PsiI	TTATAA	1 cut(s)	408
Psp6I	CCWGG	2 cut(s)	252, 553
PspGI	CCWGG	2 cut(s)	252, 553
PspN4I	GGNNCC	1 cut(s)	600
PspOMI	GGGCCC	1 cut(s)	598
PspPI	GGNCC	3 cut(s)	464, 598, 599
PsuI	RGATCY	2 cut(s)	412, 571
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	377
SaqAI	TTAA	2 cut(s)	351, 619
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	412, 571
Sau96I	GGNCC	3 cut(s)	464, 598, 599
ScrFI	CCNGG	2 cut(s)	254, 555
SduI	GDGCHC	2 cut(s)	383, 602
SfaNI	GCATC	2 cut(s)	234, 515
SfcI	CTRYAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	2 cut(s)	328, 416
SmoI	CTYRAG	2 cut(s)	328, 416
SsiI	CCGC	2 cut(s)	24, 213
StyD4I	CCNGG	2 cut(s)	252, 553
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	307
TatI	WGTACW	1 cut(s)	450
Tru1I	TTAA	2 cut(s)	351, 619
Tru9I	TTAA	2 cut(s)	351, 619
TscAI	CASTG	2 cut(s)	21, 383
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	17, 57
TspRI	CASTG	2 cut(s)	21, 383
XagI	CCTNNNNNAGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.