Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013132

Physical Location & Seq

Genomic Coordinates Forward (+)

13934320 .. 13936415

Gene Structure 2096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G156200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGACTCTGGCAGTGTTTGGCGGAGCAAGTCCATGTTTTTCCTCATCCCTTCAACGCTCAGCAGCTGAGAGAAGCTGCAGCTTATCCTACGCCCACCACAAGAATCACCTACGCACCCGTCACCACCAGCTATCAGCATTCCCTTCAAAGTGCCATCTTTTCTCATTTTTCCCATCTCGTCCTCATGCTAAAACCCTCGCCAAACCTCGCATCTTTCTTCCCCACTTGGTTGCTTCACTGGAACAAGTTGATGAGACATACATAATGGTGAAACCTGACGGAGTTCAGCGTGGCCTTGTTGGAGAGGTGATCTCTAGGTTTGAGAAGAAGGGGTTTAAACTGACTGGCTTGAAGCTCTTCCAGTGCCCCCAAGATTTGGCAGAGGAGCACTATAAGGATCTCAAGGGAAAGTCTTTCTTCCCTAAATTGATCGACTACATTGTATCTGGCCCAGTTGTGTGTATGGCATGGGAGGGTGTTGGTGTGGTCGCAGCAGCACGTAAGTTAATTGGGTCTACAAATCCTCTTCAAGCTGAACCGGGAACTATAAGAGGGGATCTTGCTGTTCAAACAGGAAGGAATGTCGTTCATGGGAGTGACAGCCCTGAAAATGGCAAGCGCGAAATAGGTAGGCTTTCTTTTTGGTATCATTTACTCTTCTCTGATGGATATTTCTCTTCTCCAACCCTTCCCACTTTTCTTTCTCATTCACTATTTGCACTACTCAGCTCTCTGGTTCAAAGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009636 GO:0009639 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009941 GO:0009987 GO:0010017 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0023052 GO:0031967 GO:0031975 GO:0032870 GO:0034641 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0055086 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071704 GO:0104004 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

251

Amino Acids

27.75

Weight (kDa)

9.51

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63310
fragaria_vesca	FvH4_5g07600
malus_domestica	MD06G1149000.v1.1 MD14G1162900.v1.1
prunus_persica	Prupe.5G156200_v2.0.a1 Prupe.5G156200_v2.0.a1
pyrus_communis	pycom06g13840 pycom14g13570
rosa_chinensis	RchiOBHm_Chr7g0190891
rosa_laevigata	RLG00000004488
rosa_multiflora	Rmu_sc0006903.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264220
rosa_rugosa	Rorug06G0507800
rosa_samantha	Rh7AG114500 Rh7BG116900 Rh7CG120000 Rh7DG118300
rosa_wichuraiana	Rw7G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	518
AccII	CGCG	1 cut(s)	624
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	408, 567
AfiI	CCNNNNNNNGG	2 cut(s)	379, 614
AgsI	TTSAA	6 cut(s)	56, 150, 355, 533, 572, 743
AluBI	AGCT	7 cut(s)	68, 78, 84, 133, 358, 536, 732
AluI	AGCT	7 cut(s)	68, 78, 84, 133, 358, 536, 732
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	2 cut(s)	408, 567
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	2 cut(s)	295, 451
ApeKI	GCWGC	5 cut(s)	65, 78, 81, 494, 497
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	4 cut(s)	101, 116, 283, 322
BaeGI	GKGCMC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	5 cut(s)	65, 77, 93, 506, 509
BccI	CCATC	3 cut(s)	165, 184, 662
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	79
BisI	GCNGC	5 cut(s)	66, 79, 82, 495, 498
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	5 cut(s)	67, 80, 83, 496, 499
Bme1390I	CCNGG	1 cut(s)	543
BmgT120I	GGNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	543
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	449
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
Bpu1102I	GCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	543
BsaAI	YACGTR	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 614
Bse1I	ACTGG	4 cut(s)	246, 352, 364, 455
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	379, 614
BseMII	CTCAG	3 cut(s)	60, 75, 742
BseNI	ACTGG	4 cut(s)	246, 352, 364, 455
BseRI	GAGGAG	1 cut(s)	401
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	5 cut(s)	65, 77, 93, 506, 509
Bsh1236I	CGCG	1 cut(s)	624
BshFI	GGCC	2 cut(s)	297, 453
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	542
BslI	CCNNNNNNNGG	2 cut(s)	379, 614
BsmAI	GTCTC	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	2 cut(s)	297, 453
Bsp1286I	GDGCHC	2 cut(s)	371, 393
Bsp143I	GATC	4 cut(s)	312, 400, 432, 559
Bsp1720I	GCTNAGC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	297, 453
BspCNI	CTCAG	3 cut(s)	61, 74, 741
BspFNI	CGCG	1 cut(s)	624
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	2 cut(s)	408, 567
BspQI	GCTCTTC	1 cut(s)	365
BsrI	ACTGG	4 cut(s)	246, 352, 364, 455
BssMI	GATC	4 cut(s)	312, 400, 432, 559
Bst6I	CTCTTC	4 cut(s)	365, 534, 665, 685
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	620
BstDEI	CTNAG	3 cut(s)	61, 69, 728
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	624
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	4 cut(s)	315, 403, 435, 562
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	4 cut(s)	312, 400, 432, 559
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	79
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	1 cut(s)	624
BstV1I	GCAGC	5 cut(s)	65, 77, 93, 506, 509
BstX2I	RGATCY	2 cut(s)	400, 559
BstYI	RGATCY	2 cut(s)	400, 559
BsuRI	GGCC	2 cut(s)	297, 453
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	21, 239, 371
Cac8I	GCNNGC	1 cut(s)	620
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	624
Cfr13I	GGNCC	1 cut(s)	452
CviAII	CATG	4 cut(s)	36, 188, 471, 593
DdeI	CTNAG	3 cut(s)	61, 69, 728
DpnI	GATC	4 cut(s)	314, 402, 434, 561
DpnII	GATC	4 cut(s)	312, 400, 432, 559
DraI	TTTAAA	1 cut(s)	340
Eam1104I	CTCTTC	4 cut(s)	365, 534, 665, 685
EarI	CTCTTC	4 cut(s)	365, 534, 665, 685
EciI	GGCGGA	1 cut(s)	39
FaeI	CATG	4 cut(s)	39, 191, 474, 596
FaiI	YATR	9 cut(s)	37, 189, 262, 266, 396, 467, 472, 551, 594
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FatI	CATG	4 cut(s)	35, 187, 470, 592
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	5 cut(s)	66, 79, 82, 495, 498
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	5 cut(s)	66, 79, 82, 495, 498
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	5 cut(s)	66, 79, 82, 495, 498
HaeIII	GGCC	2 cut(s)	297, 453
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	1 cut(s)	624
Hin1II	CATG	4 cut(s)	39, 191, 474, 596
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HinfI	GANTC	2 cut(s)	7, 106
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	4 cut(s)	101, 116, 283, 322
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	1 cut(s)	667
Hpy8I	GTNNAC	1 cut(s)	519
HpyAV	CCTTC	6 cut(s)	62, 156, 325, 573, 701, 741
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	2 cut(s)	81, 722
HpyF3I	CTNAG	3 cut(s)	61, 69, 728
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	4 cut(s)	39, 191, 474, 596
HspAI	GCGC	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	312, 400, 432, 559
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	2 cut(s)	26, 388
Lsp1109I	GCAGC	5 cut(s)	65, 77, 93, 506, 509
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	2 cut(s)	122, 599
MalI	GATC	4 cut(s)	314, 402, 434, 561
MboI	GATC	4 cut(s)	312, 400, 432, 559
MboII	GAAGA	7 cut(s)	212, 340, 352, 412, 521, 652, 672
MflI	RGATCY	2 cut(s)	400, 559
MhlI	GDGCHC	2 cut(s)	371, 393
MluCI	AATT	2 cut(s)	428, 510
MmeI	TCCRAC	2 cut(s)	283, 710
MnlI	CCTC	9 cut(s)	55, 195, 209, 219, 301, 379, 469, 537, 548
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	2 cut(s)	339, 509
MslI	CAYNNNNRTG	2 cut(s)	269, 597
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	543
MssI	GTTTAAAC	1 cut(s)	340
Mva1269I	GAATGC	1 cut(s)	140
MvnI	CGCG	1 cut(s)	624
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	4 cut(s)	312, 400, 432, 559
NlaIII	CATG	4 cut(s)	39, 191, 474, 596
NmuCI	GTSAC	2 cut(s)	122, 599
PciSI	GCTCTTC	1 cut(s)	365
PctI	GAATGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	5 cut(s)	67, 80, 83, 496, 499
PmeI	GTTTAAAC	1 cut(s)	340
Ppu21I	YACGTR	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	400, 559
PvuII	CAGCTG	1 cut(s)	68
RseI	CAYNNNNRTG	2 cut(s)	269, 597
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	339, 509
SatI	GCNGC	5 cut(s)	66, 79, 82, 495, 498
Sau3AI	GATC	4 cut(s)	312, 400, 432, 559
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	2 cut(s)	371, 393
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	79
SmiMI	CAYNNNNRTG	2 cut(s)	269, 597
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	2 cut(s)	428, 510
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	541
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	435
TasI	AATT	2 cut(s)	428, 510
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	339, 509
Tru9I	TTAA	2 cut(s)	339, 509
TscAI	CASTG	3 cut(s)	21, 246, 371
TseFI	GTSAC	2 cut(s)	122, 599
TseI	GCWGC	5 cut(s)	65, 78, 81, 494, 497
Tsp45I	GTSAC	2 cut(s)	122, 599
TspDTI	ATGAA	1 cut(s)	581
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	3 cut(s)	21, 246, 371
Van91I	CCANNNNNTGG	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.