Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013132

Physical Location & Seq

Genomic Coordinates Reverse (-)

4427867 .. 4430221

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAGAGCGTGGCAGTGTTTGGCGGAGCAAGTCCAAGTTTTTCCTCATCTCTTCAACGCTCTTGTTCAACAACCCAGAGAAGTCCCAGCTGCTTATCCTATGCCCAACCCAATTCTAACCTGCGCACCCAGCTAGCAGCATTCCCTTCAAAGTCCCATCTTTTCTCCTATTCCCAAACTCGTCCTCATGCTAAAACCCCCGCCAAACCTCGCATCTTCCTCCCACACTTGGTTGCTTCCCTGGAACAAGTTGAGGAGACATACATAATGGTGAAGCCTGATGGTGTTCAACGTGGCCTTGTTGGAGAGATAATCTCAAGGTTCGAAAAGAAGGGTTTTAAACTGACTGGCTTGAAGCTCTTCCAGTGCCCCAGAGATTTGGCAGAGGAGCATTATAAGGATCTCAAGTCAAAGTCGTTCTTCCCTAAGTTGATAGAGTACATTGTATCTGGCCCAGTTGTGTGCATGGCATGGGAGGGTGTTGGTGTTGTTGCATCAGCGCGTAAGTTGATAGGGTCTACAGACCCTCTTCAAGCTGAACCAGGAACTATTAGAGGAGATCTTGCTGTTCAAACAGGAAGGAATGTGGTTCATGGGAGTGATAGCCCTGAAAATGGCAAGCGTGAAATAGCTCTCTGGTTCAAAGAAGGTGAAGTATGCCAGTGGACGTCAGTCCAAGCACCATGGTTGAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009636 GO:0009639 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009941 GO:0009987 GO:0010017 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0023052 GO:0031967 GO:0031975 GO:0032870 GO:0034641 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0055086 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071704 GO:0104004 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

233

Amino Acids

25.6

Weight (kDa)

9.1

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	85 - 218	9e-55	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63310
fragaria_vesca	FvH4_5g07600
malus_domestica	MD06G1149000.v1.1 MD14G1162900.v1.1
prunus_persica	Prupe.5G156200_v2.0.a1 Prupe.5G156200_v2.0.a1
pyrus_communis	pycom06g13840 pycom14g13570
rosa_chinensis	RchiOBHm_Chr7g0190891
rosa_laevigata	RLG00000004488
rosa_multiflora	Rmu_sc0006903.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264220
rosa_rugosa	Rorug06G0507800
rosa_samantha	Rh7AG114500 Rh7BG116900 Rh7CG120000 Rh7DG118300
rosa_wichuraiana	Rw7G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AatII	GACGTC	1 cut(s)	671
Acc16I	TGCGCA	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	518
AccII	CGCG	1 cut(s)	502
AciI	CCGC	2 cut(s)	24, 201
AclWI	GGATC	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	668
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	229, 614
AgsI	TTSAA	8 cut(s)	56, 69, 150, 290, 355, 533, 572, 643
AjnI	CCWGG	2 cut(s)	240, 541
AluBI	AGCT	5 cut(s)	90, 133, 358, 536, 632
AluI	AGCT	5 cut(s)	90, 133, 358, 536, 632
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	2 cut(s)	295, 451
ApeKI	GCWGC	2 cut(s)	90, 137
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	2 cut(s)	126, 502
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	283, 662
AsuII	TTCGAA	1 cut(s)	324
AsuNHI	GCTAGC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	77, 149
BccI	CCATC	2 cut(s)	165, 275
BciT130I	CCWGG	2 cut(s)	242, 543
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	129
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	2 cut(s)	91, 138
BlsI	GCNGC	2 cut(s)	92, 139
Bme1390I	CCNGG	2 cut(s)	242, 543
BmgT120I	GGNCC	1 cut(s)	452
BmrFI	CCNGG	2 cut(s)	242, 543
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	2 cut(s)	222, 503
BmtI	GCTAGC	1 cut(s)	137
BmuI	ACTGGG	1 cut(s)	449
BoxI	GACNNNNGTC	1 cut(s)	671
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	2 cut(s)	301, 389
BsaHI	GRCGYC	1 cut(s)	668
BsaJI	CCNNGG	2 cut(s)	240, 683
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 614
Bse1I	ACTGG	4 cut(s)	352, 364, 455, 661
BseBI	CCWGG	2 cut(s)	242, 543
BseDI	CCNNGG	2 cut(s)	240, 683
BseLI	CCNNNNNNNGG	2 cut(s)	229, 614
BseNI	ACTGG	4 cut(s)	352, 364, 455, 661
BseRI	GAGGAG	3 cut(s)	269, 401, 570
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	77, 149
BseYI	CCCAGC	2 cut(s)	86, 129
Bsh1236I	CGCG	1 cut(s)	502
BshFI	GGCC	2 cut(s)	297, 453
BslFI	GGGAC	2 cut(s)	69, 139
BslI	CCNNNNNNNGG	2 cut(s)	229, 614
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	2 cut(s)	69, 139
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	2 cut(s)	297, 453
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	400, 559
Bsp19I	CCATGG	1 cut(s)	683
BspACI	CCGC	2 cut(s)	24, 201
BspANI	GGCC	2 cut(s)	297, 453
BspFNI	CGCG	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	129
BspOI	GCTAGC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	408
BspQI	GCTCTTC	1 cut(s)	365
BspT104I	TTCGAA	1 cut(s)	324
BsrI	ACTGG	4 cut(s)	352, 364, 455, 661
BssECI	CCNNGG	2 cut(s)	240, 683
BssMI	GATC	2 cut(s)	400, 559
BssNI	GRCGYC	1 cut(s)	668
BssT1I	CCWWGG	1 cut(s)	683
Bst2UI	CCWGG	2 cut(s)	242, 543
Bst6I	CTCTTC	3 cut(s)	57, 365, 534
BstACI	GRCGYC	1 cut(s)	668
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	135, 620
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	1 cut(s)	683
BstFNI	CGCG	1 cut(s)	502
BstHHI	GCGC	2 cut(s)	126, 502
BstKTI	GATC	2 cut(s)	403, 562
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	2 cut(s)	400, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	2 cut(s)	242, 543
BstPAI	GACNNNNGTC	1 cut(s)	671
BstSCI	CCNGG	2 cut(s)	240, 541
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	1 cut(s)	502
BstV1I	GCAGC	2 cut(s)	77, 149
BstX2I	RGATCY	2 cut(s)	400, 559
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstYI	RGATCY	2 cut(s)	400, 559
BsuRI	GGCC	2 cut(s)	297, 453
BtgI	CCRYGG	1 cut(s)	683
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	21, 371, 668
BveI	ACCTGC	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	135, 620
CfoI	GCGC	2 cut(s)	126, 502
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	5 cut(s)	188, 466, 471, 593, 684
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	2 cut(s)	402, 561
DpnII	GATC	2 cut(s)	400, 559
DraI	TTTAAA	1 cut(s)	340
Eam1104I	CTCTTC	3 cut(s)	57, 365, 534
EarI	CTCTTC	3 cut(s)	57, 365, 534
EciI	GGCGGA	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	240, 541
EcoT14I	CCWWGG	1 cut(s)	683
ErhI	CCWWGG	1 cut(s)	683
FaeI	CATG	5 cut(s)	191, 469, 474, 596, 687
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	2 cut(s)	69, 139
FatI	CATG	5 cut(s)	187, 465, 470, 592, 683
FauI	CCCGC	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	2 cut(s)	91, 138
Fsp4HI	GCNGC	2 cut(s)	91, 138
FspBI	CTAG	1 cut(s)	134
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	2 cut(s)	125, 501
GluI	GCNGC	2 cut(s)	91, 138
GsaI	CCCAGC	2 cut(s)	90, 133
HaeIII	GGCC	2 cut(s)	297, 453
HhaI	GCGC	2 cut(s)	126, 502
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	5 cut(s)	191, 469, 474, 596, 687
Hin6I	GCGC	2 cut(s)	124, 500
HinP1I	GCGC	2 cut(s)	124, 500
HphI	GGTGA	2 cut(s)	283, 662
Hpy166II	GTNNAC	2 cut(s)	519, 666
Hpy8I	GTNNAC	2 cut(s)	519, 666
HpyAV	CCTTC	4 cut(s)	156, 325, 573, 641
HpyCH4IV	ACGT	2 cut(s)	292, 668
HpyCH4V	TGCA	2 cut(s)	465, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	2 cut(s)	292, 668
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	5 cut(s)	191, 469, 474, 596, 687
HspAI	GCGC	2 cut(s)	124, 500
Kzo9I	GATC	2 cut(s)	400, 559
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	2 cut(s)	26, 388
Lsp1109I	GCAGC	2 cut(s)	77, 149
LweI	GCATC	2 cut(s)	222, 503
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	2 cut(s)	292, 668
MalI	GATC	2 cut(s)	402, 561
MboI	GATC	2 cut(s)	400, 559
MboII	GAAGA	5 cut(s)	44, 208, 352, 412, 521
MflI	RGATCY	2 cut(s)	400, 559
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	9 cut(s)	55, 195, 219, 230, 247, 379, 469, 537, 548
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	2 cut(s)	269, 597
MspA1I	CMGCKG	1 cut(s)	90
MspR9I	CCNGG	2 cut(s)	242, 543
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	2 cut(s)	242, 543
MvnI	CGCG	1 cut(s)	502
MwoI	GCNNNNNNNGC	1 cut(s)	130
NcoI	CCATGG	1 cut(s)	683
NdeII	GATC	2 cut(s)	400, 559
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	5 cut(s)	191, 469, 474, 596, 687
NsbI	TGCGCA	1 cut(s)	125
NspV	TTCGAA	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	365
PctI	GAATGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	92, 139
PshAI	GACNNNNGTC	1 cut(s)	671
PsiI	TTATAA	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	240, 541
PspFI	CCCAGC	2 cut(s)	86, 129
PspGI	CCWGG	2 cut(s)	240, 541
PspPI	GGNCC	1 cut(s)	452
PsuI	RGATCY	2 cut(s)	400, 559
PvuII	CAGCTG	1 cut(s)	90
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	2 cut(s)	269, 597
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	91, 138
Sau3AI	GATC	2 cut(s)	400, 559
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	242, 543
SduI	GDGCHC	1 cut(s)	371
SfaNI	GCATC	2 cut(s)	222, 503
SfcI	CTRYAG	1 cut(s)	519
SfuI	TTCGAA	1 cut(s)	324
SmiMI	CAYNNNNRTG	2 cut(s)	269, 597
SmlI	CTYRAG	2 cut(s)	316, 404
SmoI	CTYRAG	2 cut(s)	316, 404
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	2 cut(s)	24, 201
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	240, 541
StyI	CCWWGG	1 cut(s)	683
TaiI	ACGT	2 cut(s)	295, 671
TaqI	TCGA	1 cut(s)	324
TasI	AATT	1 cut(s)	112
TatI	WGTACW	1 cut(s)	438
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	3 cut(s)	21, 371, 668
TseI	GCWGC	2 cut(s)	90, 137
TspDTI	ATGAA	1 cut(s)	581
TspRI	CASTG	3 cut(s)	21, 371, 668
XmiI	GTMKAC	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	134
ZraI	GACGTC	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.