Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013132

Physical Location & Seq

Genomic Coordinates Forward (+)

18718986 .. 18720130

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g13840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAAACCGTGGCAGTGTTTGGCGGAGCAAGTCCAGGCTTTCCCTCATCCCTTCAACGCAGAAGAAGCTGCAGTAGCTTACCCTCCGCCCACCACAAGCCTAACCTACGCGCCCACCACCACCACCAACTATCTGCATTCCCTTCAAGCCTCCATCTTTTCTCATATTTCCCAGCTCGTCCCCATGCCAGAACCCTCTCCAAACCTCGCATCTTTCTTCCCCACTTGGTTGCTTCACTGGAACAAGTTGATGAGACGTACATAATGGTGAAGCCTGATGGAGTTCAACGTGGCCTTGTTGGAGAGATAATCTCAAGGTTTGAAAAGAAGGGATTTAAGCTGACTGGCTTGAAGCTCTTCCAGTGCCCCCAAGATTTGGCAGAGGAGCATTATAAGGATCGATCAAGGGAAAGTCGTTCTTCCCCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009636 GO:0009639 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009941 GO:0009987 GO:0010017 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0023052 GO:0031967 GO:0031975 GO:0032870 GO:0034641 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0055086 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071704 GO:0104004 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

144

Amino Acids

16.14

Weight (kDa)

9.94

Isoelectric Point (pI)

64.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	85 - 136	8.5e-16	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63310
fragaria_vesca	FvH4_5g07600
malus_domestica	MD06G1149000.v1.1 MD14G1162900.v1.1
prunus_persica	Prupe.5G156200_v2.0.a1 Prupe.5G156200_v2.0.a1
pyrus_communis	pycom06g13840 pycom14g13570
rosa_chinensis	RchiOBHm_Chr7g0190891
rosa_laevigata	RLG00000004488
rosa_multiflora	Rmu_sc0006903.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264220
rosa_rugosa	Rorug06G0507800
rosa_samantha	Rh7AG114500 Rh7BG116900 Rh7CG120000 Rh7DG118300
rosa_wichuraiana	Rw7G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AccB7I	CCANNNNNTGG	1 cut(s)	376
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	24, 87
AclWI	GGATC	1 cut(s)	405
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	5 cut(s)	56, 147, 287, 323, 352
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	5 cut(s)	69, 78, 176, 340, 355
AluI	AGCT	5 cut(s)	69, 78, 176, 340, 355
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	162, 272
BciT130I	CCWGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	70
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
Bme1390I	CCNGG	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpuEI	CTTGAG	1 cut(s)	298
Bsa29I	ATCGAT	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	3 cut(s)	243, 349, 361
BseBI	CCWGG	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseNI	ACTGG	3 cut(s)	243, 349, 361
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	248
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	2 cut(s)	397, 401
BspACI	CCGC	2 cut(s)	24, 87
BspANI	GGCC	1 cut(s)	294
BspDI	ATCGAT	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	74
BspPI	GGATC	1 cut(s)	405
BspQI	GCTCTTC	1 cut(s)	362
BsrI	ACTGG	3 cut(s)	243, 349, 361
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	2 cut(s)	397, 401
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	362
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	400, 404
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	2 cut(s)	397, 401
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 75
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	56
Bsu15I	ATCGAT	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	21, 236, 368
CfoI	GCGC	1 cut(s)	113
ClaI	ATCGAT	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	1 cut(s)	185
CviQI	GTAC	1 cut(s)	259
DpnI	GATC	2 cut(s)	399, 403
DpnII	GATC	2 cut(s)	397, 401
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
EciI	GGCGGA	2 cut(s)	39, 76
EcoRII	CCWGG	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	1 cut(s)	188
FaiI	YATR	4 cut(s)	166, 186, 263, 393
FalI	AAGNNNNNCTT	1 cut(s)	403
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	70
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	70
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	1 cut(s)	70
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HphI	GGTGA	1 cut(s)	280
HpyAV	CCTTC	3 cut(s)	62, 153, 322
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	2 cut(s)	257, 289
HpyCH4V	TGCA	2 cut(s)	72, 137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 75
HpySE526I	ACGT	2 cut(s)	257, 289
Hsp92II	CATG	1 cut(s)	188
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	397, 401
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	2 cut(s)	26, 385
LpnPI	CCDG	8 cut(s)	21, 48, 186, 202, 224, 288, 330, 374
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	1 cut(s)	219
MaeII	ACGT	2 cut(s)	257, 289
MalI	GATC	2 cut(s)	399, 403
MboI	GATC	2 cut(s)	397, 401
MboII	GAAGA	4 cut(s)	75, 209, 349, 411
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	1 cut(s)	427
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	6 cut(s)	55, 94, 161, 206, 216, 376
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	66, 75
NdeII	GATC	2 cut(s)	397, 401
NlaIII	CATG	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	362
PctI	GAATGC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	356
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	2 cut(s)	397, 401
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	368
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	2 cut(s)	24, 87
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	2 cut(s)	260, 292
TaqI	TCGA	1 cut(s)	400
TasI	AATT	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	3 cut(s)	21, 243, 368
TseI	GCWGC	1 cut(s)	69
TspRI	CASTG	3 cut(s)	21, 243, 368
Van91I	CCANNNNNTGG	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.