Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013132

Physical Location & Seq

Genomic Coordinates Forward (+)

16474121 .. 16475909

Gene Structure 1789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g13570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAAACCGTGGCAGTGTTTGGCGGAGCAAGTCCAAGCTTTTCCTCATCCCTACAACGCAGAAGTACCTGCAGCAGCTTATCCTCTGCCCACCGCAACTCTAACCTACGCACCCGCCACCACCAACTATCCGCATTCCCTTCGAACCTCCATCTTTTCTCATATTTCGCAGCTCGTCCCCATGCCAAAACCCTCGCCAAACCTCGCATCTTTCTTCCCCACTTGGTTGCTTCACTGGAACAAGTTGATGAGACGTACATAATGGTGAAGCCTGATGGAGTTCAACGTGGCCTTGTTGGAGAGATAATCTCAAGGTTTGAAAAGAAGGGATTTAAGCTGACTGGCTTGAAGCTCTTCCAGTGCCCCCAAGACTTGGCAGAGGAACATTATAAGGATCTCAAGGGAAAGTCGTTCTTCCCTAAATTGATCGAGTACATTGTATCTGGCCCCGTTGTGTGCATGGCATGGGAGGGTGTTGGCGTTGTGGCAGCAGCACGTAAGTTGATTGGGGCTACAAATCCTCTACAAGCTGAACCTGGAACTATAAGAGGGGATCTTGCTGTTCAAACAGGAAGGAACGTGGTTCATGGGAGCGACAGCCCTGAAAACGGCAAGCGTGAAATAGCTCTCTGGTTCAAAGAAGGTGAATTATGTCAATGGACACCAGCTCAAGCACCATGGTTGAGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009636 GO:0009639 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009941 GO:0009987 GO:0010017 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0023052 GO:0031967 GO:0031975 GO:0032870 GO:0034641 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046939 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0055086 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071704 GO:0104004 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00983 ko01100 ko01110 ko01130 ko04016 map00230 map00240 map00983 map01100 map01110 map01130 map04016

Pfam Domains

Protein Families

NDK

Protein Analysis

231

Amino Acids

25.43

Weight (kDa)

9.34

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	84 - 216	6.6e-55	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63310
fragaria_vesca	FvH4_5g07600
malus_domestica	MD06G1149000.v1.1 MD14G1162900.v1.1
prunus_persica	Prupe.5G156200_v2.0.a1 Prupe.5G156200_v2.0.a1
pyrus_communis	pycom06g13840 pycom14g13570
rosa_chinensis	RchiOBHm_Chr7g0190891
rosa_laevigata	RLG00000004488
rosa_multiflora	Rmu_sc0006903.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264220
rosa_rugosa	Rorug06G0507800
rosa_samantha	Rh7AG114500 Rh7BG116900 Rh7CG120000 Rh7DG118300
rosa_wichuraiana	Rw7G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	373
AciI	CCGC	4 cut(s)	24, 94, 115, 132
AclWI	GGATC	2 cut(s)	402, 561
AfaI	GTAC	3 cut(s)	67, 257, 434
AfiI	CCNNNNNNNGG	2 cut(s)	373, 608
AgsI	TTSAA	5 cut(s)	284, 320, 349, 566, 637
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	8 cut(s)	39, 78, 173, 337, 352, 530, 626, 668
AluI	AGCT	8 cut(s)	39, 78, 173, 337, 352, 530, 626, 668
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	2 cut(s)	402, 561
AoxI	GGCC	2 cut(s)	289, 445
ApeKI	GCWGC	5 cut(s)	72, 75, 170, 488, 491
Asp700I	GAANNNNTTC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	2 cut(s)	277, 656
AsuII	TTCGAA	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	365
BbvI	GCAGC	5 cut(s)	84, 87, 182, 500, 503
BccI	CCATC	2 cut(s)	159, 269
BceAI	ACGGC	1 cut(s)	625
BcgI	CGANNNNNNTGC	2 cut(s)	123, 157
BciT130I	CCWGG	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	70
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	5 cut(s)	73, 76, 171, 489, 492
BlsI	GCNGC	5 cut(s)	74, 77, 172, 490, 493
Bme1390I	CCNGG	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
Bpu14I	TTCGAA	1 cut(s)	143
BpuEI	CTTGAG	3 cut(s)	295, 383, 654
BsaAI	YACGTR	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	9, 677
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 608
Bse1I	ACTGG	3 cut(s)	240, 346, 358
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	9, 677
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	373, 608
BseNI	ACTGG	3 cut(s)	240, 346, 358
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	5 cut(s)	84, 87, 182, 500, 503
BshFI	GGCC	2 cut(s)	291, 447
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	373, 608
BsmAI	GTCTC	1 cut(s)	245
BsmBI	CGTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	2 cut(s)	291, 447
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	394, 426, 553
Bsp19I	CCATGG	1 cut(s)	677
BspACI	CCGC	4 cut(s)	24, 94, 115, 132
BspANI	GGCC	2 cut(s)	291, 447
BspLI	GGNNCC	1 cut(s)	448
BspMAI	CTGCAG	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	2 cut(s)	402, 561
BspQI	GCTCTTC	1 cut(s)	359
BspT104I	TTCGAA	1 cut(s)	143
BsrI	ACTGG	3 cut(s)	240, 346, 358
BssECI	CCNNGG	2 cut(s)	9, 677
BssMI	GATC	3 cut(s)	394, 426, 553
BssT1I	CCWWGG	1 cut(s)	677
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	359
BstBAI	YACGTR	1 cut(s)	497
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	614
BstDSI	CCRYGG	2 cut(s)	9, 677
BstF5I	GGATG	1 cut(s)	47
BstKTI	GATC	3 cut(s)	397, 429, 556
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	3 cut(s)	394, 426, 553
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	535
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	5 cut(s)	84, 87, 182, 500, 503
BstX2I	RGATCY	2 cut(s)	394, 553
BstYI	RGATCY	2 cut(s)	394, 553
BsuRI	GGCC	2 cut(s)	291, 447
BtgI	CCRYGG	2 cut(s)	9, 677
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	21, 233, 365
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	446
Csp6I	GTAC	3 cut(s)	66, 256, 433
CviAII	CATG	5 cut(s)	182, 460, 465, 587, 678
CviQI	GTAC	3 cut(s)	66, 256, 433
DpnI	GATC	3 cut(s)	396, 428, 555
DpnII	GATC	3 cut(s)	394, 426, 553
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
EciI	GGCGGA	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	677
ErhI	CCWWGG	1 cut(s)	677
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	5 cut(s)	185, 463, 468, 590, 681
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	5 cut(s)	181, 459, 464, 586, 677
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	5 cut(s)	73, 76, 171, 489, 492
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	5 cut(s)	73, 76, 171, 489, 492
GluI	GCNGC	5 cut(s)	73, 76, 171, 489, 492
HaeIII	GGCC	2 cut(s)	291, 447
Hin1II	CATG	5 cut(s)	185, 463, 468, 590, 681
HindIII	AAGCTT	1 cut(s)	37
HphI	GGTGA	2 cut(s)	277, 656
HpyAV	CCTTC	4 cut(s)	150, 319, 567, 635
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	4 cut(s)	254, 286, 496, 579
HpyCH4V	TGCA	2 cut(s)	72, 459
HpySE526I	ACGT	4 cut(s)	254, 286, 496, 579
Hsp92II	CATG	5 cut(s)	185, 463, 468, 590, 681
Kzo9I	GATC	3 cut(s)	394, 426, 553
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	26, 591
Lsp1109I	GCAGC	5 cut(s)	84, 87, 182, 500, 503
LweI	GCATC	1 cut(s)	216
MaeII	ACGT	4 cut(s)	254, 286, 496, 579
MalI	GATC	3 cut(s)	396, 428, 555
MboI	GATC	3 cut(s)	394, 426, 553
MboII	GAAGA	3 cut(s)	206, 346, 406
MflI	RGATCY	2 cut(s)	394, 553
MhlI	GDGCHC	1 cut(s)	365
MluCI	AATT	2 cut(s)	422, 647
MmeI	TCCRAC	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	537
NcoI	CCATGG	1 cut(s)	677
NdeII	GATC	3 cut(s)	394, 426, 553
NlaIII	CATG	5 cut(s)	185, 463, 468, 590, 681
NlaIV	GGNNCC	1 cut(s)	448
NspV	TTCGAA	1 cut(s)	143
PciSI	GCTCTTC	1 cut(s)	359
PctI	GAATGC	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	5 cut(s)	74, 77, 172, 490, 493
Ppu21I	YACGTR	1 cut(s)	497
PsiI	TTATAA	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	394, 553
RsaI	GTAC	3 cut(s)	67, 257, 434
RsaNI	GTAC	3 cut(s)	66, 256, 433
RseI	CAYNNNNRTG	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	5 cut(s)	73, 76, 171, 489, 492
Sau3AI	GATC	3 cut(s)	394, 426, 553
Sau96I	GGNCC	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	1 cut(s)	365
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	3 cut(s)	310, 398, 669
SmoI	CTYRAG	3 cut(s)	310, 398, 669
Sse9I	AATT	2 cut(s)	422, 647
SsiI	CCGC	4 cut(s)	24, 94, 115, 132
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	1 cut(s)	677
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	4 cut(s)	257, 289, 499, 582
TaqI	TCGA	2 cut(s)	143, 429
TasI	AATT	2 cut(s)	422, 647
TatI	WGTACW	1 cut(s)	432
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	3 cut(s)	21, 240, 365
TseI	GCWGC	5 cut(s)	72, 75, 170, 488, 491
TspDTI	ATGAA	1 cut(s)	575
TspRI	CASTG	3 cut(s)	21, 240, 365
Van91I	CCANNNNNTGG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.