AT5G63490

CBS domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
25418594 .. 25422466
3873 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63490.2

Sequence Viewer

Length: 1632 bp
ATGGCTAGCCAAGGCGGGCCAAGACGGAGCTTATCCGTTACGACTGCGTCATTGCACGGAAAGAAGAAATCCATGGATATGGCCGAACGAGGTCTCGATACTGGCCGGAGATCTCTTACTGTTTCTCGTTCTCCTTTGGGTTTAACAGGAGGCGAGCGGACTGTGAAACGGTTAAGGCTATCGAAAGCACTTACAGTACCAGCAACAACAACTATATATGAAGCTTGTAAAAGGATGGCTTCACGACGAGTTGATGCCTTGTTGTTGACTGACTCTAATGAAATGCTTTGTGGTATTCTTACTGATAAGGACATAGCTACAAGAGTGATTTCACAGGAACTTAATGTCGAGGAAACACCTGTATCTAAGGTTATGACGAAGAACCCAATGTTTGTTCTCTCAGAAACACTTGCTGTTGAAGCTCTCCAAAAGATGGTCCAAGGAAAATTCAGACATTTGCCGGTTGTTGAAAATGGCGAAGTTATTGCTTTATTAGATATAGCAAAGTGTTTGTATGATGCAATTGCTCGTATGGAGAGGGCTGCTGAGAAAGGTAAGGCAATAGCTGCTGCTGTTGAAGGTGTTGAAAAAAGTTGGGGGACAAACACTTCAGTTCCCAACACTTTTATTGAAACGCTACGAGACCGGATGTTTAGACCTTCTTTATCAACAATTATACCAGATGATACAAAGGTTTTGAAAGTCTCACCAACTGACACAGTGTTGACTGTAGCAAAGAAGATGGTTGAATTCCAATCAAGCTGTGCAGTCGTGATAATCGAGGACAAGCTTCGAGGGATATTTACTTCCAAGGATATACTGATGCGGGTTGTGGCTGAAAATCTTCCTCCATCTGAGACTCTAGTGGAAACGGTTATGACTCAGAATCCAGAATCTACGATAGTTGACACACCAATTGTTGAAGCTCTACACATCATGCACGAGGGAAAATTCTTACACCTTCCCGTTACTGACAAAGAAGGAGATGTAGTTGCTGTTGTCGATGTAATCCATGTCACTCACGCTGCTGTTGCCACAGCTGGAACTACTGCGGGAATAGGTAATGAGGCGACAAACACAATGATGCAAAAGTTTTGGGATTCAGCTATGGCATTGTCTCCTAATGAGGACGATGAGGACTCGAGAAGTGAGAGCTCCATGAAGGTTGCTTCCGAAGCTGAGACAGGAAAATCTTTCCCTTTTGCAAATACATTTTCTTTCAAAATTGAAGACAAAAAGCACAGGAAACACAGATTCATAAGCGACACTCGGAGTTTGACAGAGGTGATAACCGCGATCATTCAGAGGGTAGGGGATGATATCGATCCAGATAACTTCCCCCAAATTTTGTATGAAGATGAAGACCACGATAAAGTGTTGTTGGCTTCAGATAGTGACCTTCAAGCAGCCATAGAGCATGCAAAATCAATTGGCTGGAAGAGTCTGAGATTACATTTGGATGATTCAAGAGAAGGCAAAGGAAGAAGAAGGAGAAGAGCATCAGGATCAGCAGAATCAATGGAGTATGTAGAGACAGACGCTTGGGCTGCTGCTTATAGTGGAGTTGCGGCTGGTGCAGCATTAGTAGCTGGTCTTGGTTTTATGGCTTTTCTCAGAAAATTCGGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

543

Amino Acids

59.43

Weight (kDa)

6.07

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 61 - 108 2.3e-08 CBS domain
CBS PF00571 121 - 165 1e-07 CBS domain
CBS PF00571 230 - 277 6.7e-06 CBS domain
CBS PF00571 289 - 342 9.9e-06 CBS domain
PB1 PF00564 404 - 488 7.7e-19 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 433
AccBSI CCGCTC 1 cut(s) 157
AccII CGCG 1 cut(s) 1295
AciI CCGC 6 cut(s) 15, 157, 826, 1052, 1293, 1568
AclWI GGATC 2 cut(s) 1319, 1513
AcoI YGGCCR 2 cut(s) 81, 103
AcsI RAATTY 5 cut(s) 446, 749, 950, 1344, 1619
AcuI CTGAAG 2 cut(s) 594, 1371
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 433
Alw21I GWGCWC 1 cut(s) 1157
Alw26I GTCTC 7 cut(s) 98, 636, 709, 851, 1122, 1175, 1526
AlwI GGATC 2 cut(s) 1319, 1513
Ama87I CYCGRG 1 cut(s) 1141
AoxI GGCC 3 cut(s) 17, 81, 103
ApeKI GCWGC 8 cut(s) 542, 566, 569, 1025, 1406, 1547, 1550, 1577
ApoI RAATTY 5 cut(s) 446, 749, 950, 1344, 1619
Asp700I GAANNNNTTC 1 cut(s) 843
AspS9I GGNCC 2 cut(s) 17, 436
AsuHPI GGTGA 2 cut(s) 699, 1297
AsuNHI GCTAGC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 1141
AvaII GGWCC 1 cut(s) 436
BaeI ACNNNNGTAYC 4 cut(s) 345, 378, 678, 711
BanII GRGCYC 1 cut(s) 1157
BauI CACGAG 1 cut(s) 941
BbsI GAAGAC 2 cut(s) 1236, 1368
Bbv12I GWGCWC 1 cut(s) 1157
BbvI GCAGC 8 cut(s) 529, 553, 556, 1012, 1418, 1534, 1537, 1589
BccI CCATC 4 cut(s) 229, 427, 736, 859
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BcoDI GTCTC 7 cut(s) 98, 636, 709, 851, 1122, 1175, 1526
BfaI CTAG 2 cut(s) 6, 863
BfmI CTRYAG 1 cut(s) 729
BglII AGATCT 1 cut(s) 110
BisI GCNGC 9 cut(s) 543, 567, 570, 1026, 1407, 1548, 1551, 1569, 1578
BlsI GCNGC 9 cut(s) 544, 568, 571, 1027, 1408, 1549, 1552, 1570, 1579
Bme18I GGWCC 1 cut(s) 436
BmeT110I CYCGRG 1 cut(s) 1141
BmgT120I GGNCC 2 cut(s) 17, 436
BmsI GCATC 5 cut(s) 244, 508, 813, 1074, 1508
BmtI GCTAGC 1 cut(s) 9
BpiI GAAGAC 2 cut(s) 1236, 1368
Bsa29I ATCGAT 1 cut(s) 1323
BsaBI GATNNNNATC 1 cut(s) 1323
BsaI GGTCTC 2 cut(s) 98, 636
BsaJI CCNNGG 4 cut(s) 10, 72, 439, 810
BsaWI WCCGGW 1 cut(s) 645
BsaXI ACNNNNNCTCC 2 cut(s) 975, 1005
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse118I RCCGGY 1 cut(s) 460
Bse1I ACTGG 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 50
Bse8I GATNNNNATC 1 cut(s) 1323
BseCI ATCGAT 1 cut(s) 1323
BseDI CCNNGG 4 cut(s) 10, 72, 439, 810
BseGI GGATG 4 cut(s) 240, 654, 1321, 1465
BseJI GATNNNNATC 1 cut(s) 1323
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMI GCAATG 1 cut(s) 50
BseMII CTCAG 7 cut(s) 414, 537, 846, 896, 1170, 1436, 1627
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 8 cut(s) 529, 553, 556, 1012, 1418, 1534, 1537, 1589
BsgI GTGCAG 2 cut(s) 786, 1596
Bsh1236I CGCG 1 cut(s) 1295
BshFI GGCC 3 cut(s) 19, 83, 105
BshVI ATCGAT 1 cut(s) 1323
BsiHKAI GWGCWC 1 cut(s) 1157
BsiHKCI CYCGRG 1 cut(s) 1141
BsiSI CCGG 3 cut(s) 106, 461, 646
BslFI GGGAC 1 cut(s) 613
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 7 cut(s) 98, 636, 709, 851, 1122, 1175, 1526
BsmFI GGGAC 1 cut(s) 613
BsnI GGCC 3 cut(s) 19, 83, 105
Bso31I GGTCTC 2 cut(s) 98, 636
BsoBI CYCGRG 1 cut(s) 1141
Bsp1286I GDGCHC 1 cut(s) 1157
Bsp143I GATC 4 cut(s) 110, 1296, 1324, 1505
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 6 cut(s) 15, 157, 826, 1052, 1293, 1568
BspANI GGCC 3 cut(s) 19, 83, 105
BspCNI CTCAG 7 cut(s) 413, 538, 847, 895, 1171, 1437, 1626
BspDI ATCGAT 1 cut(s) 1323
BspFNI CGCG 1 cut(s) 1295
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 2 cut(s) 1319, 1513
BspQI GCTCTTC 1 cut(s) 1489
BspTNI GGTCTC 2 cut(s) 98, 636
BsrBI CCGCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 460
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 460
BssECI CCNNGG 4 cut(s) 10, 72, 439, 810
BssMI GATC 4 cut(s) 110, 1296, 1324, 1505
BssSI CACGAG 1 cut(s) 941
BssT1I CCWWGG 4 cut(s) 10, 72, 439, 810
Bst2BI CACGAG 1 cut(s) 941
Bst4CI ACNGT 7 cut(s) 121, 163, 171, 196, 721, 730, 874
Bst6I CTCTTC 2 cut(s) 1433, 1489
BstAPI GCANNNNNTGC 1 cut(s) 566
BstC8I GCNNGC 4 cut(s) 7, 17, 155, 1419
BstDEI CTNAG 8 cut(s) 366, 400, 546, 855, 882, 1179, 1445, 1613
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 4 cut(s) 240, 654, 1321, 1465
BstFNI CGCG 1 cut(s) 1295
BstKTI GATC 4 cut(s) 113, 1299, 1327, 1508
BstMAI GTCTC 7 cut(s) 98, 636, 709, 851, 1122, 1175, 1526
BstMBI GATC 4 cut(s) 110, 1296, 1324, 1505
BstMWI GCNNNNNNNGC 8 cut(s) 419, 566, 1031, 1175, 1547, 1574, 1577, 1586
BstNSI RCATGY 1 cut(s) 1421
BstSFI CTRYAG 1 cut(s) 729
BstUI CGCG 1 cut(s) 1295
BstV1I GCAGC 8 cut(s) 529, 553, 556, 1012, 1418, 1534, 1537, 1589
BstV2I GAAGAC 2 cut(s) 1236, 1368
BstX2I RGATCY 1 cut(s) 110
BstXI CCANNNNNNTGG 1 cut(s) 79
BstYI RGATCY 1 cut(s) 110
Bsu15I ATCGAT 1 cut(s) 1323
BsuRI GGCC 3 cut(s) 19, 83, 105
BsuTUI ATCGAT 1 cut(s) 1323
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 4 cut(s) 240, 654, 1321, 1465
BtsIMutI CAGTG 1 cut(s) 726
Cac8I GCNNGC 4 cut(s) 7, 17, 155, 1419
Cfr10I RCCGGY 1 cut(s) 460
Cfr13I GGNCC 2 cut(s) 17, 436
ClaI ATCGAT 1 cut(s) 1323
CseI GACGC 2 cut(s) 36, 1547
Csp6I GTAC 1 cut(s) 197
CviAII CATG 5 cut(s) 73, 937, 1013, 1159, 1418
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 8 cut(s) 366, 400, 546, 855, 882, 1179, 1445, 1613
DpnI GATC 4 cut(s) 112, 1298, 1326, 1507
DpnII GATC 4 cut(s) 110, 1296, 1324, 1505
EaeI YGGCCR 2 cut(s) 81, 103
Eam1104I CTCTTC 2 cut(s) 1433, 1489
EarI CTCTTC 2 cut(s) 1433, 1489
Ecl136II GAGCTC 1 cut(s) 1155
Eco130I CCWWGG 4 cut(s) 10, 72, 439, 810
Eco24I GRGCYC 1 cut(s) 1157
Eco31I GGTCTC 2 cut(s) 98, 636
Eco32I GATATC 1 cut(s) 1321
Eco47I GGWCC 1 cut(s) 436
Eco53kI GAGCTC 1 cut(s) 1155
Eco57I CTGAAG 2 cut(s) 594, 1371
Eco88I CYCGRG 1 cut(s) 1141
EcoICRI GAGCTC 1 cut(s) 1155
EcoRI GAATTC 1 cut(s) 749
EcoRV GATATC 1 cut(s) 1321
EcoT14I CCWWGG 4 cut(s) 10, 72, 439, 810
EcoT38I GRGCYC 1 cut(s) 1157
ErhI CCWWGG 4 cut(s) 10, 72, 439, 810
FaeI CATG 5 cut(s) 76, 940, 1016, 1162, 1421
FalI AAGNNNNNCTT 2 cut(s) 223, 255
FaqI GGGAC 1 cut(s) 613
FatI CATG 5 cut(s) 72, 936, 1012, 1158, 1417
FauI CCCGC 3 cut(s) 8, 819, 1045
Fnu4HI GCNGC 9 cut(s) 543, 567, 570, 1026, 1407, 1548, 1551, 1569, 1578
FokI GGATG 4 cut(s) 247, 661, 1328, 1472
FriOI GRGCYC 1 cut(s) 1157
Fsp4HI GCNGC 9 cut(s) 543, 567, 570, 1026, 1407, 1548, 1551, 1569, 1578
FspBI CTAG 2 cut(s) 6, 863
GluI GCNGC 9 cut(s) 543, 567, 570, 1026, 1407, 1548, 1551, 1569, 1578
HaeIII GGCC 3 cut(s) 19, 83, 105
HapII CCGG 3 cut(s) 106, 461, 646
HgaI GACGC 2 cut(s) 36, 1547
Hin1II CATG 5 cut(s) 76, 940, 1016, 1162, 1421
HincII GTYRAC 3 cut(s) 267, 726, 907
HindII GTYRAC 3 cut(s) 267, 726, 907
HindIII AAGCTT 2 cut(s) 222, 788
HpaII CCGG 3 cut(s) 106, 461, 646
HphI GGTGA 2 cut(s) 699, 1297
Hpy166II GTNNAC 3 cut(s) 267, 726, 907
Hpy188III TCNNGA 8 cut(s) 95, 243, 772, 890, 1143, 1328, 1467, 1503
Hpy8I GTNNAC 3 cut(s) 267, 726, 907
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 8 cut(s) 572, 669, 971, 974, 1156, 1409, 1466, 1482
HpyCH4III ACNGT 7 cut(s) 121, 163, 171, 196, 721, 730, 874
HpyCH4V TGCA 8 cut(s) 55, 521, 767, 940, 1087, 1205, 1421, 1577
HpyF10VI GCNNNNNNNGC 8 cut(s) 419, 566, 1031, 1175, 1547, 1574, 1577, 1586
HpyF3I CTNAG 8 cut(s) 366, 400, 546, 855, 882, 1179, 1445, 1613
Hsp92II CATG 5 cut(s) 76, 940, 1016, 1162, 1421
Kzo9I GATC 4 cut(s) 110, 1296, 1324, 1505
LguI GCTCTTC 1 cut(s) 1489
LmnI GCTCC 2 cut(s) 27, 1160
Lsp1109I GCAGC 8 cut(s) 529, 553, 556, 1012, 1418, 1534, 1537, 1589
LweI GCATC 5 cut(s) 244, 508, 813, 1074, 1508
MaeI CTAG 2 cut(s) 6, 863
MaeIII GTNAC 4 cut(s) 37, 967, 1015, 1394
MalI GATC 4 cut(s) 112, 1298, 1326, 1507
MbiI CCGCTC 1 cut(s) 157
MboI GATC 4 cut(s) 110, 1296, 1324, 1505
MfeI CAATTG 3 cut(s) 522, 915, 1428
MflI RGATCY 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 1157
MlyI GAGTC 5 cut(s) 266, 853, 874, 1133, 1450
MroXI GAANNNNTTC 1 cut(s) 843
MseI TTAA 3 cut(s) 143, 173, 342
MslI CAYNNNNRTG 3 cut(s) 77, 1082, 1458
MspA1I CMGCKG 1 cut(s) 1040
MspI CCGG 3 cut(s) 106, 461, 646
MunI CAATTG 3 cut(s) 522, 915, 1428
MvnI CGCG 1 cut(s) 1295
MwoI GCNNNNNNNGC 8 cut(s) 419, 566, 1031, 1175, 1547, 1574, 1577, 1586
NcoI CCATGG 1 cut(s) 72
NdeII GATC 4 cut(s) 110, 1296, 1324, 1505
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 5 cut(s) 76, 940, 1016, 1162, 1421
NmuCI GTSAC 2 cut(s) 1015, 1394
NspI RCATGY 1 cut(s) 1421
PaeI GCATGC 1 cut(s) 1421
PaeR7I CTCGAG 1 cut(s) 1141
PciSI GCTCTTC 1 cut(s) 1489
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PdmI GAANNNNTTC 1 cut(s) 843
PfeI GAWTC 6 cut(s) 886, 893, 1100, 1254, 1463, 1514
PflFI GACNNNGTC 1 cut(s) 46
PflMI CCANNNNNTGG 1 cut(s) 433
PkrI GCNGC 9 cut(s) 544, 568, 571, 1027, 1408, 1549, 1552, 1570, 1579
PleI GAGTC 5 cut(s) 266, 853, 874, 1133, 1449
PpsI GAGTC 5 cut(s) 266, 853, 874, 1133, 1449
Psp124BI GAGCTC 1 cut(s) 1157
PspPI GGNCC 2 cut(s) 17, 436
PsuI RGATCY 1 cut(s) 110
PsyI GACNNNGTC 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 1040
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
RseI CAYNNNNRTG 3 cut(s) 77, 1082, 1458
SacI GAGCTC 1 cut(s) 1157
SapI GCTCTTC 1 cut(s) 1489
SaqAI TTAA 3 cut(s) 143, 173, 342
SatI GCNGC 9 cut(s) 543, 567, 570, 1026, 1407, 1548, 1551, 1569, 1578
Sau3AI GATC 4 cut(s) 110, 1296, 1324, 1505
Sau96I GGNCC 2 cut(s) 17, 436
SchI GAGTC 5 cut(s) 266, 853, 874, 1133, 1450
SduI GDGCHC 1 cut(s) 1157
SfaNI GCATC 5 cut(s) 244, 508, 813, 1074, 1508
SfcI CTRYAG 1 cut(s) 729
Sfr274I CTCGAG 1 cut(s) 1141
SinI GGWCC 1 cut(s) 436
SlaI CTCGAG 1 cut(s) 1141
SmiMI CAYNNNNRTG 3 cut(s) 77, 1082, 1458
SmlI CTYRAG 1 cut(s) 1141
SmoI CTYRAG 1 cut(s) 1141
SphI GCATGC 1 cut(s) 1421
SsiI CCGC 6 cut(s) 15, 157, 826, 1052, 1293, 1568
SspMI CTAG 2 cut(s) 6, 863
SstI GAGCTC 1 cut(s) 1157
StyI CCWWGG 4 cut(s) 10, 72, 439, 810
TaaI ACNGT 7 cut(s) 121, 163, 171, 196, 721, 730, 874
TaqI TCGA 8 cut(s) 96, 182, 348, 780, 793, 1002, 1142, 1323
TaqII GACCGA 1 cut(s) 1613
TauI GCSGC 1 cut(s) 1571
TfiI GAWTC 6 cut(s) 886, 893, 1100, 1254, 1463, 1514
Tru1I TTAA 3 cut(s) 143, 173, 342
Tru9I TTAA 3 cut(s) 143, 173, 342
TscAI CASTG 1 cut(s) 726
TseFI GTSAC 2 cut(s) 1015, 1394
TseI GCWGC 8 cut(s) 542, 566, 569, 1025, 1406, 1547, 1550, 1577
Tsp45I GTSAC 2 cut(s) 1015, 1394
TspDTI ATGAA 6 cut(s) 234, 294, 1175, 1246, 1368, 1374
TspGWI ACGGA 3 cut(s) 25, 40, 72
TspRI CASTG 1 cut(s) 726
Tth111I GACNNNGTC 1 cut(s) 46
Van91I CCANNNNNTGG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 436
XapI RAATTY 5 cut(s) 446, 749, 950, 1344, 1619
XceI RCATGY 1 cut(s) 1421
XhoI CTCGAG 1 cut(s) 1141
XmnI GAANNNNTTC 1 cut(s) 843
XspI CTAG 2 cut(s) 6, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.