Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008035

Physical Location & Seq

Genomic Coordinates Forward (+)

28440759 .. 28445907

Gene Structure 5149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1140500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

ATGGCTAGTCAAGGCGGTTCTTCGAGAAGAAGTCTGTCATTGACGAATGCATCGTCGCATGACAAGAAGAAATCCTCTGATGCTAGTAACGGAGGCCCTGATTCTGCTCGAAAATCTTTCACGGCTTCTCGTTCCACGGGGCTAACTGGAGAGCGGACTGTGAAACGATTGCGGTTATCAAAGGCTCTGACAGTACCTGAAAATACTAGTGTTCAAGAAGCTTGTCGTCGGATGGCTGCTCGTAGGGTTGATGCTTTGTTGTTAACTGATTCTAATGCGTTGCTCTGTGGAATTCTTACGGACAAGGATATAGCGACAAGGGTTATTTCTCGTGAGCTTAATCTTGAGGAAACCCTTGTTTCTAAAGTTATGACAAAGAACCCGATATTTGTTCTTTCAGACACTCTTGCTGTTGAGGCCCTTCAGAAAATGGTGCAAGGGAAATTCAGGCATTTGCCTGTTGTGGAGAATGGAGAGGTCATTGCTTTACTTGATATAGCAAAGTGTTTATATGATGCCATTGCTCGAATGGAAAGAGCAGCTGAAAAGGGAAAGGCTATTGCTGCTGCTGTGGAAGGTGTTGAAAAACATTGGGGAACATCTAGTTCTGATGCAGGTTCCAATACATTTGTTGAGACACTTCGAGAGCGTTTGTTTAGGCCATCTTTGTCGACAATCATTCCAGATAGTACAAAGGTCTTAACAGTTTCACCAACAGATACGGTTTTGATGACAACAAAGAAGATGCAGGAAATGCGAGTAAGCTCGGCAATTGTGACGGTTGATAACAAGCCACGAGGAATTCTTACCTCAAAAGATATCTTAATGCGTGTAATATCACAAAACCTTCCTCCGAAGACCACTCTTGTAGAGAAGGTCATGACTCCAAACCCAGAATGTGCTACAGTGGATACACCAATTGTTGATGCATTGCATACCATGCATGATGGAAAGTTTTTGCACCTTCCTGTTGTAGACAGAGATGGAGCTGTTGTTGCTGTTGTTGATGTAATTCATATCACTCATGCTGCTGTGGCCACTGTTGGAAATACTGCTGGAGTGAGCAATGAGGCTGCAACCACTATGATGCAAAAGTTTTGGGATTCTGCCATGGCCTTGGGTCCCAATGATGATGATGAGGAGTCTCGGAGTGAAAATTCGTTGAAACTGGCTTCTGAGAGCGCAGAGACAGGGAGATCGCTACCCTTTCCACCATCCAATTTTCCAAATACCTTTGCTTTCAAACTTCAAGATAAGAGGGGTCGAATGCATAGATTCACTTGCAATATTCAGAGTTTGACAGAACTTATAGCCTCCATCATTCAGAGAATGGGAGATGACATTGACCGCAACAACCTTCCTCAAATTTTGTATGAAGATGAAGACCGTGATAAAGTTATATTGGCATCAGATAGTGATCTTATAGCAGCTGTGGATCATGCAAAGCAAGTTGGTTGGAAGGGTTTGAGACTGCATTTGGATTATTCAGGAACACACACTCGCCGCCGAAGGGGTTCAGCTACAGGAAATGTGGATTATGCATATGCAGATTCTGCATGGGCATCAGCATACAATGCTGTTGCAGCTGGGGCTGCAGTTGCTGTCGGCTTAGGCGTGTTAGCGTACTTGAAGAGATCCGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS PB1

Protein Analysis

549

Amino Acids

59.37

Weight (kDa)

8.43

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	60 - 107	6.2e-08	CBS domain
CBS	PF00571	120 - 164	1.1e-08	CBS domain
CBS	PF00571	230 - 278	1.1e-06	CBS domain
CBS	PF00571	290 - 343	2.1e-08	CBS domain
PB1	PF00564	411 - 494	3e-15	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63490 AT5G63490
fragaria_vesca	FvH4_5g08490 FvH4_5g08490 FvH4_5g08490 FvH4_5g08490 FvH4_5g08490 FvH4_5g08490
malus_domestica	MD06G1140500.v1.1 MD14G1155700.v1.1
prunus_persica	Prupe.5G149700_v2.0.a1
pyrus_communis	pycom14g12940
rosa_chinensis	RchiOBHm_Chr7g0189921
rosa_laevigata	RLG00000004577
rosa_multiflora	Rmu_sc0014588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265050
rosa_rugosa	Rorug06G0500900 Rorug06G0501000 Rorug06G0501100
rosa_samantha	Rh7AG106200 Rh7BG108900 Rh7CG111000 Rh7DG109400
rosa_wichuraiana	Rw7G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	605
AccBSI	CCGCTC	1 cut(s)	154
AccI	GTMKAC	2 cut(s)	671, 975
AciI	CCGC	5 cut(s)	15, 154, 172, 1348, 1504
AclWI	GGATC	2 cut(s)	1443, 1629
AcoI	YGGCCR	1 cut(s)	1035
AcsI	RAATTY	5 cut(s)	291, 443, 801, 1156, 1365
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	3 cut(s)	195, 691, 1625
AfiI	CCNNNNNNNGG	1 cut(s)	1510
AgsI	TTSAA	6 cut(s)	215, 584, 1165, 1243, 1250, 1630
AhlI	ACTAGT	1 cut(s)	206
AluBI	AGCT	8 cut(s)	221, 337, 542, 765, 989, 1430, 1520, 1586
AluI	AGCT	8 cut(s)	221, 337, 542, 765, 989, 1430, 1520, 1586
Alw26I	GTCTC	4 cut(s)	629, 1149, 1181, 1462
AlwI	GGATC	2 cut(s)	1443, 1629
AlwNI	CAGNNNCTG	3 cut(s)	197, 1553, 1601
AoxI	GGCC	5 cut(s)	94, 417, 659, 1035, 1113
ApeKI	GCWGC	9 cut(s)	236, 539, 563, 566, 1028, 1073, 1427, 1583, 1592
ApoI	RAATTY	5 cut(s)	291, 443, 801, 1156, 1365
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
Asp700I	GAANNNNTTC	1 cut(s)	1513
AspLEI	GCGC	1 cut(s)	1184
AspS9I	GGNCC	3 cut(s)	95, 418, 1121
AsuHPI	GGTGA	1 cut(s)	702
AvaII	GGWCC	1 cut(s)	1121
BalI	TGGCCA	1 cut(s)	1037
BauI	CACGAG	2 cut(s)	330, 795
BbsI	GAAGAC	2 cut(s)	863, 1389
BbvI	GCAGC	9 cut(s)	223, 550, 551, 553, 1015, 1060, 1439, 1579, 1595
BccI	CCATC	6 cut(s)	226, 670, 941, 977, 1222, 1325
BceAI	ACGGC	1 cut(s)	138
BciVI	GTATCC	1 cut(s)	904
BcoDI	GTCTC	4 cut(s)	629, 1149, 1181, 1462
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	4 cut(s)	6, 84, 207, 603
BfmI	CTRYAG	3 cut(s)	903, 1521, 1593
BfuAI	ACCTGC	1 cut(s)	605
BfuI	GTATCC	1 cut(s)	904
Bme18I	GGWCC	1 cut(s)	1121
BmgT120I	GGNCC	3 cut(s)	95, 418, 1121
BmiI	GGNNCC	3 cut(s)	619, 1122, 1123
BpiI	GAAGAC	2 cut(s)	863, 1389
BpmI	CTGGAG	2 cut(s)	168, 1077
Bpu10I	CCTNAGC	1 cut(s)	1609
BpuEI	CTTGAG	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	1416
BsaJI	CCNNGG	3 cut(s)	135, 1110, 1116
BsaWI	WCCGGW	1 cut(s)	1637
BsaXI	ACNNNNNCTCC	2 cut(s)	978, 1008
Bsc4I	CCNNNNNNNGG	1 cut(s)	1510
Bse1I	ACTGG	2 cut(s)	151, 1173
Bse3DI	GCAATG	4 cut(s)	480, 519, 929, 1072
Bse8I	GATNNNNATC	1 cut(s)	1416
BseDI	CCNNGG	3 cut(s)	135, 1110, 1116
BseGI	GGATG	2 cut(s)	237, 1214
BseJI	GATNNNNATC	1 cut(s)	1416
BseLI	CCNNNNNNNGG	1 cut(s)	1510
BseMI	GCAATG	4 cut(s)	480, 519, 929, 1072
BseMII	CTCAG	1 cut(s)	1167
BseNI	ACTGG	2 cut(s)	151, 1173
BseRI	GAGGAG	1 cut(s)	1154
BseXI	GCAGC	9 cut(s)	223, 550, 551, 553, 1015, 1060, 1439, 1579, 1595
BseYI	CCCAGC	1 cut(s)	1586
BshFI	GGCC	5 cut(s)	96, 419, 661, 1037, 1115
BsiSI	CCGG	1 cut(s)	1638
BslFI	GGGAC	1 cut(s)	1107
BslI	CCNNNNNNNGG	1 cut(s)	1510
BsmAI	GTCTC	4 cut(s)	629, 1149, 1181, 1462
BsmFI	GGGAC	1 cut(s)	1107
BsmI	GAATGC	2 cut(s)	52, 1272
BsnI	GGCC	5 cut(s)	96, 419, 661, 1037, 1115
Bsp143I	GATC	4 cut(s)	1196, 1417, 1435, 1634
Bsp19I	CCATGG	1 cut(s)	1110
BspACI	CCGC	5 cut(s)	15, 154, 172, 1348, 1504
BspANI	GGCC	5 cut(s)	96, 419, 661, 1037, 1115
BspCNI	CTCAG	1 cut(s)	1168
BspHI	TCATGA	1 cut(s)	879
BspLI	GGNNCC	3 cut(s)	619, 1122, 1123
BspMAI	CTGCAG	1 cut(s)	1597
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	2 cut(s)	1443, 1629
BsrBI	CCGCTC	1 cut(s)	154
BsrDI	GCAATG	4 cut(s)	480, 519, 929, 1072
BsrI	ACTGG	2 cut(s)	151, 1173
BssECI	CCNNGG	3 cut(s)	135, 1110, 1116
BssMI	GATC	4 cut(s)	1196, 1417, 1435, 1634
BssSI	CACGAG	2 cut(s)	330, 795
BssT1I	CCWWGG	2 cut(s)	1110, 1116
Bst2BI	CACGAG	2 cut(s)	330, 795
Bst4CI	ACNGT	8 cut(s)	160, 193, 706, 724, 781, 907, 1042, 1388
Bst6I	CTCTTC	1 cut(s)	1625
BstAPI	GCANNNNNTGC	4 cut(s)	754, 940, 1553, 1574
BstDEI	CTNAG	2 cut(s)	1176, 1609
BstDSI	CCRYGG	2 cut(s)	135, 1110
BstF5I	GGATG	2 cut(s)	237, 1214
BstHHI	GCGC	1 cut(s)	1184
BstKTI	GATC	4 cut(s)	1199, 1420, 1438, 1637
BstMAI	GTCTC	4 cut(s)	629, 1149, 1181, 1462
BstMBI	GATC	4 cut(s)	1196, 1417, 1435, 1634
BstSFI	CTRYAG	3 cut(s)	903, 1521, 1593
BstV1I	GCAGC	9 cut(s)	223, 550, 551, 553, 1015, 1060, 1439, 1579, 1595
BstV2I	GAAGAC	2 cut(s)	863, 1389
BstX2I	RGATCY	1 cut(s)	1634
BstXI	CCANNNNNNTGG	1 cut(s)	1117
BstYI	RGATCY	1 cut(s)	1634
BsuI	GTATCC	1 cut(s)	904
BsuRI	GGCC	5 cut(s)	96, 419, 661, 1037, 1115
BtgI	CCRYGG	2 cut(s)	135, 1110
BtsCI	GGATG	2 cut(s)	237, 1214
BtsIMutI	CAGTG	2 cut(s)	912, 1038
BveI	ACCTGC	1 cut(s)	605
CaiI	CAGNNNCTG	3 cut(s)	197, 1553, 1601
CciI	TCATGA	1 cut(s)	879
CfoI	GCGC	1 cut(s)	1184
Cfr13I	GGNCC	3 cut(s)	95, 418, 1121
Csp6I	GTAC	3 cut(s)	194, 690, 1624
CviAII	CATG	8 cut(s)	59, 880, 940, 944, 1025, 1111, 1439, 1557
CviQI	GTAC	3 cut(s)	194, 690, 1624
DdeI	CTNAG	2 cut(s)	1176, 1609
DpnI	GATC	4 cut(s)	1198, 1419, 1437, 1636
DpnII	GATC	4 cut(s)	1196, 1417, 1435, 1634
EaeI	YGGCCR	1 cut(s)	1035
Eam1104I	CTCTTC	1 cut(s)	1625
EarI	CTCTTC	1 cut(s)	1625
Eco130I	CCWWGG	2 cut(s)	1110, 1116
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	1 cut(s)	1121
Eco57I	CTGAAG	1 cut(s)	407
EcoO109I	RGGNCCY	3 cut(s)	95, 418, 1121
EcoRI	GAATTC	2 cut(s)	291, 801
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	2 cut(s)	1110, 1116
EcoT22I	ATGCAT	5 cut(s)	52, 931, 945, 1272, 1543
ErhI	CCWWGG	2 cut(s)	1110, 1116
FaeI	CATG	8 cut(s)	62, 883, 943, 947, 1028, 1114, 1442, 1560
FaqI	GGGAC	1 cut(s)	1107
FatI	CATG	8 cut(s)	58, 879, 939, 943, 1024, 1110, 1438, 1556
FauNDI	CATATG	1 cut(s)	1543
FblI	GTMKAC	2 cut(s)	671, 975
FokI	GGATG	2 cut(s)	244, 1201
FspBI	CTAG	4 cut(s)	6, 84, 207, 603
GlaI	GCGC	1 cut(s)	1183
GsaI	CCCAGC	1 cut(s)	1590
GsuI	CTGGAG	2 cut(s)	168, 1077
HaeIII	GGCC	5 cut(s)	96, 419, 661, 1037, 1115
HapII	CCGG	1 cut(s)	1638
HhaI	GCGC	1 cut(s)	1184
Hin1II	CATG	8 cut(s)	62, 883, 943, 947, 1028, 1114, 1442, 1560
Hin6I	GCGC	1 cut(s)	1182
HinP1I	GCGC	1 cut(s)	1182
HincII	GTYRAC	2 cut(s)	264, 672
HindII	GTYRAC	2 cut(s)	264, 672
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	7 cut(s)	101, 269, 883, 1103, 1142, 1275, 1550
HpaI	GTTAAC	1 cut(s)	264
HpaII	CCGG	1 cut(s)	1638
HphI	GGTGA	1 cut(s)	702
Hpy166II	GTNNAC	3 cut(s)	264, 672, 976
Hpy188III	TCNNGA	9 cut(s)	24, 215, 332, 344, 644, 683, 880, 1250, 1488
Hpy8I	GTNNAC	3 cut(s)	264, 672, 976
Hpy99I	CGWCG	2 cut(s)	58, 231
HpyAV	CCTTC	8 cut(s)	431, 569, 857, 868, 974, 1367, 1453, 1503
HpyCH4III	ACNGT	8 cut(s)	160, 193, 706, 724, 781, 907, 1042, 1388
HpyF3I	CTNAG	2 cut(s)	1176, 1609
Hsp92II	CATG	8 cut(s)	62, 883, 943, 947, 1028, 1114, 1442, 1560
HspAI	GCGC	1 cut(s)	1182
KflI	GGGWCCC	1 cut(s)	1121
KspAI	GTTAAC	1 cut(s)	264
Kzo9I	GATC	4 cut(s)	1196, 1417, 1435, 1634
LmnI	GCTCC	1 cut(s)	986
Lsp1109I	GCAGC	9 cut(s)	223, 550, 551, 553, 1015, 1060, 1439, 1579, 1595
MaeI	CTAG	4 cut(s)	6, 84, 207, 603
MaeIII	GTNAC	3 cut(s)	86, 775, 1640
MalI	GATC	4 cut(s)	1198, 1419, 1437, 1636
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	4 cut(s)	1196, 1417, 1435, 1634
MboII	GAAGA	8 cut(s)	12, 39, 79, 754, 868, 1388, 1394, 1642
MfeI	CAATTG	2 cut(s)	771, 918
MflI	RGATCY	1 cut(s)	1634
MlsI	TGGCCA	1 cut(s)	1037
MluCI	AATT	9 cut(s)	291, 443, 771, 801, 918, 1011, 1156, 1219, 1365
MluNI	TGGCCA	1 cut(s)	1037
MlyI	GAGTC	2 cut(s)	877, 1151
MmeI	TCCRAC	3 cut(s)	209, 1024, 1436
Mox20I	TGGCCA	1 cut(s)	1037
Mph1103I	ATGCAT	5 cut(s)	52, 931, 945, 1272, 1543
MroXI	GAANNNNTTC	1 cut(s)	1513
MscI	TGGCCA	1 cut(s)	1037
MseI	TTAA	4 cut(s)	263, 339, 701, 824
MslI	CAYNNNNRTG	1 cut(s)	1085
Msp20I	TGGCCA	1 cut(s)	1037
MspA1I	CMGCKG	3 cut(s)	542, 1430, 1586
MspI	CCGG	1 cut(s)	1638
MunI	CAATTG	2 cut(s)	771, 918
Mva1269I	GAATGC	2 cut(s)	52, 1272
NcoI	CCATGG	1 cut(s)	1110
NdeI	CATATG	1 cut(s)	1543
NdeII	GATC	4 cut(s)	1196, 1417, 1435, 1634
NlaIII	CATG	8 cut(s)	62, 883, 943, 947, 1028, 1114, 1442, 1560
NlaIV	GGNNCC	3 cut(s)	619, 1122, 1123
NmeAIII	GCCGAG	1 cut(s)	746
NmuCI	GTSAC	1 cut(s)	775
NsiI	ATGCAT	5 cut(s)	52, 931, 945, 1272, 1543
PagI	TCATGA	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 1611
PctI	GAATGC	2 cut(s)	52, 1272
PdmI	GAANNNNTTC	1 cut(s)	1513
PfeI	GAWTC	5 cut(s)	101, 269, 1103, 1275, 1550
PleI	GAGTC	2 cut(s)	877, 1150
PpsI	GAGTC	2 cut(s)	877, 1150
PpuMI	RGGWCCY	1 cut(s)	1121
Psp5II	RGGWCCY	1 cut(s)	1121
PspFI	CCCAGC	1 cut(s)	1586
PspN4I	GGNNCC	3 cut(s)	619, 1122, 1123
PspPI	GGNCC	3 cut(s)	95, 418, 1121
PspPPI	RGGWCCY	1 cut(s)	1121
PstI	CTGCAG	1 cut(s)	1597
PstNI	CAGNNNCTG	3 cut(s)	197, 1553, 1601
PsuI	RGATCY	1 cut(s)	1634
PvuII	CAGCTG	3 cut(s)	542, 1430, 1586
RsaI	GTAC	3 cut(s)	195, 691, 1625
RsaNI	GTAC	3 cut(s)	194, 690, 1624
RseI	CAYNNNNRTG	1 cut(s)	1085
SalI	GTCGAC	1 cut(s)	670
SaqAI	TTAA	4 cut(s)	263, 339, 701, 824
Sau3AI	GATC	4 cut(s)	1196, 1417, 1435, 1634
Sau96I	GGNCC	3 cut(s)	95, 418, 1121
SchI	GAGTC	2 cut(s)	877, 1151
SfcI	CTRYAG	3 cut(s)	903, 1521, 1593
SinI	GGWCC	1 cut(s)	1121
SmiMI	CAYNNNNRTG	1 cut(s)	1085
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	9 cut(s)	291, 443, 771, 801, 918, 1011, 1156, 1219, 1365
SsiI	CCGC	5 cut(s)	15, 154, 172, 1348, 1504
SspI	AATATT	1 cut(s)	1288
SspMI	CTAG	4 cut(s)	6, 84, 207, 603
StyI	CCWWGG	2 cut(s)	1110, 1116
TaaI	ACNGT	8 cut(s)	160, 193, 706, 724, 781, 907, 1042, 1388
TaqI	TCGA	6 cut(s)	23, 109, 526, 643, 671, 1264
TasI	AATT	9 cut(s)	291, 443, 771, 801, 918, 1011, 1156, 1219, 1365
TatI	WGTACW	1 cut(s)	689
TauI	GCSGC	1 cut(s)	1506
TfiI	GAWTC	5 cut(s)	101, 269, 1103, 1275, 1550
Tru1I	TTAA	4 cut(s)	263, 339, 701, 824
Tru9I	TTAA	4 cut(s)	263, 339, 701, 824
TscAI	CASTG	2 cut(s)	912, 1045
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	9 cut(s)	236, 539, 563, 566, 1028, 1073, 1427, 1583, 1592
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	3 cut(s)	1004, 1389, 1395
TspGWI	ACGGA	2 cut(s)	105, 314
TspRI	CASTG	2 cut(s)	912, 1045
VpaK11BI	GGWCC	1 cut(s)	1121
XapI	RAATTY	5 cut(s)	291, 443, 801, 1156, 1365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XmiI	GTMKAC	2 cut(s)	671, 975
XmnI	GAANNNNTTC	1 cut(s)	1513
XspI	CTAG	4 cut(s)	6, 84, 207, 603
Zsp2I	ATGCAT	5 cut(s)	52, 931, 945, 1272, 1543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.