Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008035

Physical Location & Seq

Genomic Coordinates Forward (+)

9400544 .. 9405074

Gene Structure 4531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG109400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCTGCTCGTAGAGTTGATGCGTTGTTGTTAACCGACTCTAATGCATTGCTTTGTGGAATACTTACCGACAAGGATATAGCAACGAGAGTTATTGCACGCGAGCTTAATCTTGAGGAAACACTTGTTTCTAAAGTTATGACGAGGAACCCAATATTTGTACTTTCTGACACTCTTGCAGTCGAAGCCCTTCAGAAGATGGTTCAAGGAAAATTCAGACATTTGCCTGTGGTGGAGAATGGAGAGGTAATTGCTTTGCTAGATATAGCAAAGTGTTTGTATGATGCTATTGCTCGAATGGAAAGGGCAGCTGAAAAGGGAAAGGCTATTGCTGCTGCTGTGGAAGGTGTTGAAAAACATTGGGGCAGCTCTAATTCTGATGCAGGTTCCAATACATTTGTTGAAACACTTCGTGAAAAGTTGTTTAGGCCATCTTTGTCTACAATCATTCCGGAGAATACAAAGGTCTTGACAGTTTCGCCAACAGATACAGTTTTGGCAACAGCAAAGAAGATGCAGGAGATGCGAATTAGTTCTGCAGTTGTGACAGTTGATAACAAGCCACGAGGAATTCTTACTTCTAAGGATATTTTGATGCGGGTCGTATCACAAAATCTTCCTCCAAAGACCACCCTTGTAGAGAAGGTCATGACTCCAAATCCAGAATGTGCCTCGGTTGATACACCAATTGTTGATGCACTGCACACTATGCATGATGGAAAATTTTTGCACCTGCCTGTAGTAGACAGAGATGGAGGTATAGTTGCTGTTGTTGATGTAATTCATATCACTCATGCTGCTGTGGCCACTGTTGGAAATAGTGCTGGAGTGTTTAATGAGACCGCAAGTACTATGATGCAGAAGTTTTGGGATTCTGCCATGGCCTTAAGTCCAAATGATGAAGATGAGGAATGTCGAAGTGAAAATTCTTTAAGACTGGCTTCTGAGGGAGCAGAGACTAGGGGGTCACATCCCTTTCCATCACCAATTTTTCCAAATACTTTTGCTTTCAAGATTCAGGATAAGAAAGGCCGAATGCACAGATTTACTTGCAATATTCAGAGTTTGACTGATCTTATAACTTCCATTATTCATAGAATGGGAGATGACATTGACCGCCACAACCTTCCTCAGATATTGTATGAAGACGAAGATCGTGATAAAGTAATATTGGCATCTGATAGTGATCTCGCTGCAGCCGTGGACCATGCCAGGCAAGTTGGTTGGAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS PB1

Protein Analysis

411

Amino Acids

45.08

Weight (kDa)

5.68

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	43 - 87	7.1e-09	CBS domain
CBS	PF00571	153 - 201	1.3e-08	CBS domain
CBS	PF00571	213 - 266	5.2e-09	CBS domain
PB1	PF00564	334 - 410	4.1e-12	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63490 AT5G63490
fragaria_vesca	FvH4_5g08490 FvH4_5g08490 FvH4_5g08490 FvH4_5g08490 FvH4_5g08490 FvH4_5g08490
malus_domestica	MD06G1140500.v1.1 MD14G1155700.v1.1
prunus_persica	Prupe.5G149700_v2.0.a1
pyrus_communis	pycom14g12940
rosa_chinensis	RchiOBHm_Chr7g0189921
rosa_laevigata	RLG00000004577
rosa_multiflora	Rmu_sc0014588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265050
rosa_rugosa	Rorug06G0500900 Rorug06G0501000 Rorug06G0501100
rosa_samantha	Rh7AG106200 Rh7BG108900 Rh7CG111000 Rh7DG109400
rosa_wichuraiana	Rw7G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1079
AarI	CACCTGC	1 cut(s)	741
AasI	GACNNNNNNGTC	1 cut(s)	964
Acc36I	ACCTGC	2 cut(s)	374, 741
AccI	GTMKAC	2 cut(s)	440, 744
AccII	CGCG	1 cut(s)	102
AccIII	TCCGGA	1 cut(s)	451
AciI	CCGC	3 cut(s)	598, 843, 1117
AcoI	YGGCCR	1 cut(s)	804
AcsI	RAATTY	4 cut(s)	212, 570, 722, 925
AcuI	CTGAAG	1 cut(s)	176
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	2 cut(s)	162, 850
AflII	CTTAAG	1 cut(s)	886
AgsI	TTSAA	4 cut(s)	206, 353, 404, 1012
AjnI	CCWGG	1 cut(s)	1211
AluBI	AGCT	3 cut(s)	106, 311, 369
AluI	AGCT	3 cut(s)	106, 311, 369
Alw26I	GTCTC	2 cut(s)	833, 950
Aor13HI	TCCGGA	1 cut(s)	451
AoxI	GGCC	4 cut(s)	428, 804, 882, 1030
ApeKI	GCWGC	8 cut(s)	5, 308, 332, 335, 366, 797, 1193, 1196
ApoI	RAATTY	4 cut(s)	212, 570, 722, 925
Asp700I	GAANNNNTTC	3 cut(s)	189, 408, 532
AspS9I	GGNCC	1 cut(s)	1204
AsuHPI	GGTGA	1 cut(s)	975
AvaII	GGWCC	1 cut(s)	1204
BalI	TGGCCA	1 cut(s)	806
BauI	CACGAG	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	1152
BbvI	GCAGC	7 cut(s)	319, 320, 322, 378, 784, 1180, 1208
BccI	CCATC	5 cut(s)	193, 439, 710, 746, 988
BceAI	ACGGC	1 cut(s)	1184
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	1213
BcoDI	GTCTC	2 cut(s)	833, 950
BfaI	CTAG	2 cut(s)	260, 960
BfmI	CTRYAG	3 cut(s)	537, 738, 1194
BfrI	CTTAAG	1 cut(s)	886
BfuAI	ACCTGC	2 cut(s)	374, 741
BisI	GCNGC	8 cut(s)	6, 309, 333, 336, 367, 798, 1194, 1197
BlsI	GCNGC	8 cut(s)	7, 310, 334, 337, 368, 799, 1195, 1198
BmcAI	AGTACT	1 cut(s)	850
Bme1390I	CCNGG	1 cut(s)	1213
Bme18I	GGWCC	1 cut(s)	1204
BmgT120I	GGNCC	1 cut(s)	1204
BmiI	GGNNCC	2 cut(s)	149, 388
BmrFI	CCNGG	1 cut(s)	1213
BmsI	GCATC	9 cut(s)	10, 274, 370, 504, 513, 585, 685, 846, 1184
BpiI	GAAGAC	1 cut(s)	1152
BpmI	CTGGAG	1 cut(s)	846
BpuEI	CTTGAG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	1185
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	3 cut(s)	672, 879, 1200
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bse1I	ACTGG	1 cut(s)	942
Bse3DI	GCAATG	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	1185
BseAI	TCCGGA	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	1213
BseDI	CCNNGG	3 cut(s)	672, 879, 1200
BseGI	GGATG	1 cut(s)	970
BseJI	GATNNNNATC	1 cut(s)	1185
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	936, 1145
BseNI	ACTGG	1 cut(s)	942
BseXI	GCAGC	7 cut(s)	319, 320, 322, 378, 784, 1180, 1208
BsgI	GTGCAG	1 cut(s)	686
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	4 cut(s)	430, 806, 884, 1032
BsiSI	CCGG	1 cut(s)	452
BsmAI	GTCTC	2 cut(s)	833, 950
BsmI	GAATGC	1 cut(s)	1041
BsnI	GGCC	4 cut(s)	430, 806, 884, 1032
Bso31I	GGTCTC	1 cut(s)	833
Bsp13I	TCCGGA	1 cut(s)	451
Bsp143I	GATC	3 cut(s)	1072, 1153, 1186
Bsp19I	CCATGG	1 cut(s)	879
BspACI	CCGC	3 cut(s)	598, 843, 1117
BspANI	GGCC	4 cut(s)	430, 806, 884, 1032
BspCNI	CTCAG	2 cut(s)	937, 1144
BspEI	TCCGGA	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	2 cut(s)	149, 388
BspMAI	CTGCAG	2 cut(s)	541, 1198
BspMI	ACCTGC	2 cut(s)	374, 741
BspTI	CTTAAG	1 cut(s)	886
BspTNI	GGTCTC	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	942
BssECI	CCNNGG	3 cut(s)	672, 879, 1200
BssMI	GATC	3 cut(s)	1072, 1153, 1186
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	879
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	1213
Bst4CI	ACNGT	4 cut(s)	475, 493, 550, 811
BstAFI	CTTAAG	1 cut(s)	886
BstAPI	GCANNNNNTGC	2 cut(s)	523, 709
BstC8I	GCNNGC	2 cut(s)	100, 104
BstDEI	CTNAG	3 cut(s)	582, 945, 1131
BstDSI	CCRYGG	2 cut(s)	879, 1200
BstF5I	GGATG	1 cut(s)	970
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	3 cut(s)	1075, 1156, 1189
BstMAI	GTCTC	2 cut(s)	833, 950
BstMBI	GATC	3 cut(s)	1072, 1153, 1186
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 332, 523, 709, 803
BstNI	CCWGG	1 cut(s)	1213
BstSCI	CCNGG	1 cut(s)	1211
BstSFI	CTRYAG	3 cut(s)	537, 738, 1194
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	7 cut(s)	319, 320, 322, 378, 784, 1180, 1208
BstV2I	GAAGAC	1 cut(s)	1152
BsuRI	GGCC	4 cut(s)	430, 806, 884, 1032
BtgI	CCRYGG	2 cut(s)	879, 1200
BtsCI	GGATG	1 cut(s)	970
BtsI	GCAGTG	1 cut(s)	698
BtsIMutI	CAGTG	2 cut(s)	698, 807
BveI	ACCTGC	2 cut(s)	374, 741
Cac8I	GCNNGC	2 cut(s)	100, 104
CciI	TCATGA	1 cut(s)	648
Cfr13I	GGNCC	1 cut(s)	1204
Csp6I	GTAC	2 cut(s)	161, 849
CviAII	CATG	5 cut(s)	649, 713, 794, 880, 1208
CviQI	GTAC	2 cut(s)	161, 849
DdeI	CTNAG	3 cut(s)	582, 945, 1131
DpnI	GATC	3 cut(s)	1074, 1155, 1188
DpnII	GATC	3 cut(s)	1072, 1153, 1186
DraIII	CACNNNGTG	1 cut(s)	413
DrdI	GACNNNNNNGTC	1 cut(s)	964
DseDI	GACNNNNNNGTC	1 cut(s)	964
EaeI	YGGCCR	1 cut(s)	804
Eco130I	CCWWGG	1 cut(s)	879
Eco31I	GGTCTC	1 cut(s)	833
Eco47I	GGWCC	1 cut(s)	1204
Eco57I	CTGAAG	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	570
EcoRII	CCWGG	1 cut(s)	1211
EcoT14I	CCWWGG	1 cut(s)	879
EcoT22I	ATGCAT	2 cut(s)	49, 714
ErhI	CCWWGG	1 cut(s)	879
FaeI	CATG	5 cut(s)	652, 716, 797, 883, 1211
FalI	AAGNNNNNCTT	2 cut(s)	925, 957
FatI	CATG	5 cut(s)	648, 712, 793, 879, 1207
FauI	CCCGC	1 cut(s)	591
FblI	GTMKAC	2 cut(s)	440, 744
Fnu4HI	GCNGC	8 cut(s)	6, 309, 333, 336, 367, 798, 1194, 1197
FokI	GGATG	1 cut(s)	957
Fsp4HI	GCNGC	8 cut(s)	6, 309, 333, 336, 367, 798, 1194, 1197
FspBI	CTAG	2 cut(s)	260, 960
GluI	GCNGC	8 cut(s)	6, 309, 333, 336, 367, 798, 1194, 1197
GsuI	CTGGAG	1 cut(s)	846
HaeIII	GGCC	4 cut(s)	430, 806, 884, 1032
HapII	CCGG	1 cut(s)	452
Hin1II	CATG	5 cut(s)	652, 716, 797, 883, 1211
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	4 cut(s)	38, 652, 872, 1015
HpaI	GTTAAC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	1 cut(s)	975
Hpy166II	GTNNAC	4 cut(s)	33, 441, 745, 1204
Hpy188I	TCNGA	8 cut(s)	169, 195, 218, 379, 946, 1062, 1134, 1180
Hpy188III	TCNNGA	9 cut(s)	113, 413, 452, 469, 649, 662, 1012, 1019, 1157
Hpy8I	GTNNAC	4 cut(s)	33, 441, 745, 1204
HpyAV	CCTTC	5 cut(s)	200, 338, 637, 1136, 1222
HpyCH4III	ACNGT	4 cut(s)	475, 493, 550, 811
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 332, 523, 709, 803
HpyF3I	CTNAG	3 cut(s)	582, 945, 1131
Hsp92II	CATG	5 cut(s)	652, 716, 797, 883, 1211
Kpn2I	TCCGGA	1 cut(s)	451
KspAI	GTTAAC	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	1072, 1153, 1186
LmnI	GCTCC	1 cut(s)	950
Lsp1109I	GCAGC	7 cut(s)	319, 320, 322, 378, 784, 1180, 1208
LweI	GCATC	9 cut(s)	10, 274, 370, 504, 513, 585, 685, 846, 1184
MaeI	CTAG	2 cut(s)	260, 960
MaeIII	GTNAC	2 cut(s)	544, 966
MalI	GATC	3 cut(s)	1074, 1155, 1188
MboI	GATC	3 cut(s)	1072, 1153, 1186
MboII	GAAGA	6 cut(s)	208, 523, 608, 914, 1157, 1163
MfeI	CAATTG	1 cut(s)	687
MlsI	TGGCCA	1 cut(s)	806
MluNI	TGGCCA	1 cut(s)	806
MlyI	GAGTC	2 cut(s)	32, 646
MmeI	TCCRAC	2 cut(s)	793, 1205
Mox20I	TGGCCA	1 cut(s)	806
Mph1103I	ATGCAT	2 cut(s)	49, 714
MroI	TCCGGA	1 cut(s)	451
MroXI	GAANNNNTTC	3 cut(s)	189, 408, 532
MscI	TGGCCA	1 cut(s)	806
MseI	TTAA	5 cut(s)	32, 108, 834, 887, 932
Msp20I	TGGCCA	1 cut(s)	806
MspA1I	CMGCKG	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	886
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	1213
MunI	CAATTG	1 cut(s)	687
Mva1269I	GAATGC	1 cut(s)	1041
MvaI	CCWGG	1 cut(s)	1213
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	5 cut(s)	185, 332, 523, 709, 803
NcoI	CCATGG	1 cut(s)	879
NdeII	GATC	3 cut(s)	1072, 1153, 1186
NlaIII	CATG	5 cut(s)	652, 716, 797, 883, 1211
NlaIV	GGNNCC	2 cut(s)	149, 388
NmuCI	GTSAC	2 cut(s)	544, 966
NsiI	ATGCAT	2 cut(s)	49, 714
PagI	TCATGA	1 cut(s)	648
PaqCI	CACCTGC	1 cut(s)	741
PcsI	WCGNNNNNNNCGW	1 cut(s)	1197
PctI	GAATGC	1 cut(s)	1041
PdmI	GAANNNNTTC	3 cut(s)	189, 408, 532
PfeI	GAWTC	2 cut(s)	872, 1015
PkrI	GCNGC	8 cut(s)	7, 310, 334, 337, 368, 799, 1195, 1198
PleI	GAGTC	2 cut(s)	32, 646
PpsI	GAGTC	2 cut(s)	32, 646
PsiI	TTATAA	1 cut(s)	1079
Psp6I	CCWGG	1 cut(s)	1211
PspGI	CCWGG	1 cut(s)	1211
PspN4I	GGNNCC	2 cut(s)	149, 388
PspPI	GGNCC	1 cut(s)	1204
PstI	CTGCAG	2 cut(s)	541, 1198
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	2 cut(s)	162, 850
RsaNI	GTAC	2 cut(s)	161, 849
SaqAI	TTAA	5 cut(s)	32, 108, 834, 887, 932
SatI	GCNGC	8 cut(s)	6, 309, 333, 336, 367, 798, 1194, 1197
Sau3AI	GATC	3 cut(s)	1072, 1153, 1186
Sau96I	GGNCC	1 cut(s)	1204
ScaI	AGTACT	1 cut(s)	850
SchI	GAGTC	2 cut(s)	32, 646
ScrFI	CCNGG	1 cut(s)	1213
SfaNI	GCATC	9 cut(s)	10, 274, 370, 504, 513, 585, 685, 846, 1184
SfcI	CTRYAG	3 cut(s)	537, 738, 1194
SinI	GGWCC	1 cut(s)	1204
SmlI	CTYRAG	2 cut(s)	113, 886
SmoI	CTYRAG	2 cut(s)	113, 886
SsiI	CCGC	3 cut(s)	598, 843, 1117
SspI	AATATT	3 cut(s)	156, 1057, 1170
SspMI	CTAG	2 cut(s)	260, 960
StyD4I	CCNGG	1 cut(s)	1211
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	4 cut(s)	475, 493, 550, 811
TaqI	TCGA	3 cut(s)	183, 295, 916
TatI	WGTACW	2 cut(s)	160, 848
TfiI	GAWTC	2 cut(s)	872, 1015
Tru1I	TTAA	5 cut(s)	32, 108, 834, 887, 932
Tru9I	TTAA	5 cut(s)	32, 108, 834, 887, 932
TscAI	CASTG	2 cut(s)	705, 814
TseFI	GTSAC	2 cut(s)	544, 966
TseI	GCWGC	8 cut(s)	5, 308, 332, 335, 366, 797, 1193, 1196
Tsp45I	GTSAC	2 cut(s)	544, 966
TspDTI	ATGAA	4 cut(s)	773, 915, 1082, 1158
TspRI	CASTG	2 cut(s)	705, 814
Vha464I	CTTAAG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	1204
XapI	RAATTY	4 cut(s)	212, 570, 722, 925
XmiI	GTMKAC	2 cut(s)	440, 744
XmnI	GAANNNNTTC	3 cut(s)	189, 408, 532
XspI	CTAG	2 cut(s)	260, 960
ZrmI	AGTACT	1 cut(s)	850
Zsp2I	ATGCAT	2 cut(s)	49, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.