Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008035

Physical Location & Seq

Genomic Coordinates Forward (+)

8600583 .. 8605070

Gene Structure 4488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG111000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCTGCTCGTAGAGTTGATGCATTGTTGTTAACTGACTCTAATGCATTGCTTTGTGGAATACTTACCGACAAGGATATAGCAACGAGAGTTATTGCACGCGAGCTTAATCTTGAGGAAACACTTGTTTCTAAAGTTATGACGAGGAACCCAATATTTGTACTTTCTGACACTCTTGCAGTCGAAGCCCTTCAGAAGATGGTTCAAGGAAAATTCAGACATTTGCCTGTGGTGGAGAATGGAGAGGTCATTGCTTTGCTAGATATAGCAAAGTGTTTGTATGATGCTATTGCTCGAATGGAAAGGGCAGCTGAAAAGGGAAAGGCTATTGCTGCTGCTGTGGAAGGTGTTGAAAAACATTGGGGCAGCTCTAATTCTGATGCAGGTTCCAATACATTTGTTGAAACACTTCGTGAAAAGTTGTTTAGGCCATCTTTGTCTACAATCATTCCGGAGAATACAAAGGTCTTGACAGTTTCGCCAACAGATACAGTTTTGGCAACAGCAAAGAAGATGCAGGAGATGCGAATTAGTTCTGCAGTTGTGACAGTTGATAACAAGCCACGAGGAATTCTTACTTCAAAGGATATTTTGATGCGGGTCGTATCACAAAATCTTCCTCCAAAGACCACCCTTGTAGAGAAGGTCATGACTCCAAATCCAGAATGTGCCTCGGTTGATACACCAATTGTTGATGCACTGCACACTATGCATGATGGAAAATTTTTGCACCTGCCTGTAGTAGACAGAGATGGAGGTATAGTTGCTGTTGTTGATGTAATTCATATCACTCATGCTGCTGTGGCCACTGTTGGAAATAGTGCTGGAGTGTTTAATGAGACCGCAAGTACTATGATGCAGAAGTTTTGGGATTCTGCCATGGCCTTAAGTCCAAATGATGAAGATGAGGAATGTCGAAGTGAAAATTCTTTAAGACTGGCTTCTGAGGGAGCAGAGACTAGGGGGTCACATCCCTTTCCATCACCAATTTTTCCAAATACTTTTGCTTTCAAGATTCAGGATAAGAAAGGCCGAATGCACAGATTTACTTGCAGTACGTTCCTTTGTTTCCAGCAGCCAATGAAAGGAGTATATATGTGTGTGCATATCCTAAATTGGCATGTAGTAATTTTGAAACATCTAAACCAGGTTTATATTACATGCTACAATCATAAATCGGCAACCATTAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS PB1

Protein Analysis

398

Amino Acids

43.84

Weight (kDa)

6.89

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	43 - 87	6.7e-09	CBS domain
CBS	PF00571	153 - 201	1.2e-08	CBS domain
CBS	PF00571	213 - 266	4.9e-09	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63490 AT5G63490
fragaria_vesca	FvH4_5g08490 FvH4_5g08490 FvH4_5g08490 FvH4_5g08490 FvH4_5g08490 FvH4_5g08490
malus_domestica	MD06G1140500.v1.1 MD14G1155700.v1.1
prunus_persica	Prupe.5G149700_v2.0.a1
pyrus_communis	pycom14g12940
rosa_chinensis	RchiOBHm_Chr7g0189921
rosa_laevigata	RLG00000004577
rosa_multiflora	Rmu_sc0014588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265050
rosa_rugosa	Rorug06G0500900 Rorug06G0501000 Rorug06G0501100
rosa_samantha	Rh7AG106200 Rh7BG108900 Rh7CG111000 Rh7DG109400
rosa_wichuraiana	Rw7G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	741
AasI	GACNNNNNNGTC	1 cut(s)	964
Acc36I	ACCTGC	2 cut(s)	374, 741
AccI	GTMKAC	2 cut(s)	440, 744
AccII	CGCG	1 cut(s)	102
AccIII	TCCGGA	1 cut(s)	451
AciI	CCGC	2 cut(s)	598, 843
AcoI	YGGCCR	1 cut(s)	804
AcsI	RAATTY	4 cut(s)	212, 570, 722, 925
AcuI	CTGAAG	1 cut(s)	176
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	3 cut(s)	162, 850, 1057
AfiI	CCNNNNNNNGG	1 cut(s)	1085
AflII	CTTAAG	1 cut(s)	886
AgsI	TTSAA	6 cut(s)	206, 353, 404, 582, 1012, 1135
AjnI	CCWGG	1 cut(s)	1146
AluBI	AGCT	4 cut(s)	106, 311, 369, 1191
AluI	AGCT	4 cut(s)	106, 311, 369, 1191
Alw26I	GTCTC	2 cut(s)	833, 950
Aor13HI	TCCGGA	1 cut(s)	451
AoxI	GGCC	4 cut(s)	428, 804, 882, 1030
ApeKI	GCWGC	7 cut(s)	5, 308, 332, 335, 366, 797, 1075
ApoI	RAATTY	4 cut(s)	212, 570, 722, 925
Asp700I	GAANNNNTTC	3 cut(s)	189, 408, 532
AsuHPI	GGTGA	1 cut(s)	975
BalI	TGGCCA	1 cut(s)	806
BauI	CACGAG	1 cut(s)	564
BbvI	GCAGC	6 cut(s)	319, 320, 322, 378, 784, 1087
BccI	CCATC	5 cut(s)	193, 439, 710, 746, 988
BciT130I	CCWGG	1 cut(s)	1148
BcoDI	GTCTC	2 cut(s)	833, 950
BfaI	CTAG	2 cut(s)	260, 960
BfmI	CTRYAG	2 cut(s)	537, 738
BfrI	CTTAAG	1 cut(s)	886
BfuAI	ACCTGC	2 cut(s)	374, 741
BisI	GCNGC	7 cut(s)	6, 309, 333, 336, 367, 798, 1076
BlsI	GCNGC	7 cut(s)	7, 310, 334, 337, 368, 799, 1077
BmcAI	AGTACT	1 cut(s)	850
Bme1390I	CCNGG	1 cut(s)	1148
BmiI	GGNNCC	2 cut(s)	149, 388
BmrFI	CCNGG	1 cut(s)	1148
BmsI	GCATC	8 cut(s)	10, 274, 370, 504, 513, 585, 685, 846
BpmI	CTGGAG	1 cut(s)	846
BpuEI	CTTGAG	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	2 cut(s)	672, 879
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bsc4I	CCNNNNNNNGG	1 cut(s)	1085
Bse1I	ACTGG	1 cut(s)	942
Bse3DI	GCAATG	2 cut(s)	47, 249
BseAI	TCCGGA	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	1148
BseDI	CCNNGG	2 cut(s)	672, 879
BseGI	GGATG	1 cut(s)	970
BseLI	CCNNNNNNNGG	1 cut(s)	1085
BseMI	GCAATG	2 cut(s)	47, 249
BseMII	CTCAG	1 cut(s)	936
BseNI	ACTGG	1 cut(s)	942
BseXI	GCAGC	6 cut(s)	319, 320, 322, 378, 784, 1087
BsgI	GTGCAG	1 cut(s)	686
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	4 cut(s)	430, 806, 884, 1032
BsiSI	CCGG	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	1085
BsmAI	GTCTC	2 cut(s)	833, 950
BsmI	GAATGC	1 cut(s)	1041
BsnI	GGCC	4 cut(s)	430, 806, 884, 1032
Bso31I	GGTCTC	1 cut(s)	833
Bsp13I	TCCGGA	1 cut(s)	451
Bsp19I	CCATGG	1 cut(s)	879
BspACI	CCGC	2 cut(s)	598, 843
BspANI	GGCC	4 cut(s)	430, 806, 884, 1032
BspCNI	CTCAG	1 cut(s)	937
BspEI	TCCGGA	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	2 cut(s)	149, 388
BspMAI	CTGCAG	1 cut(s)	541
BspMI	ACCTGC	2 cut(s)	374, 741
BspTI	CTTAAG	1 cut(s)	886
BspTNI	GGTCTC	1 cut(s)	833
BsrDI	GCAATG	2 cut(s)	47, 249
BsrI	ACTGG	1 cut(s)	942
BssECI	CCNNGG	2 cut(s)	672, 879
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	879
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	1148
Bst4CI	ACNGT	4 cut(s)	475, 493, 550, 811
BstAFI	CTTAAG	1 cut(s)	886
BstAPI	GCANNNNNTGC	2 cut(s)	523, 709
BstC8I	GCNNGC	2 cut(s)	100, 104
BstDEI	CTNAG	1 cut(s)	945
BstDSI	CCRYGG	1 cut(s)	879
BstF5I	GGATG	1 cut(s)	970
BstFNI	CGCG	1 cut(s)	102
BstMAI	GTCTC	2 cut(s)	833, 950
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 332, 523, 709, 803
BstNI	CCWGG	1 cut(s)	1148
BstNSI	RCATGY	2 cut(s)	1124, 1164
BstSCI	CCNGG	1 cut(s)	1146
BstSFI	CTRYAG	2 cut(s)	537, 738
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	6 cut(s)	319, 320, 322, 378, 784, 1087
BsuRI	GGCC	4 cut(s)	430, 806, 884, 1032
BtgI	CCRYGG	1 cut(s)	879
BtsCI	GGATG	1 cut(s)	970
BtsI	GCAGTG	1 cut(s)	698
BtsIMutI	CAGTG	2 cut(s)	698, 807
BveI	ACCTGC	2 cut(s)	374, 741
Cac8I	GCNNGC	2 cut(s)	100, 104
CciI	TCATGA	1 cut(s)	648
CsiI	ACCWGGT	1 cut(s)	1146
Csp6I	GTAC	3 cut(s)	161, 849, 1056
CviAII	CATG	6 cut(s)	649, 713, 794, 880, 1121, 1161
CviQI	GTAC	3 cut(s)	161, 849, 1056
DdeI	CTNAG	1 cut(s)	945
DraIII	CACNNNGTG	1 cut(s)	413
DrdI	GACNNNNNNGTC	1 cut(s)	964
DseDI	GACNNNNNNGTC	1 cut(s)	964
EaeI	YGGCCR	1 cut(s)	804
Eco130I	CCWWGG	1 cut(s)	879
Eco31I	GGTCTC	1 cut(s)	833
Eco57I	CTGAAG	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	570
EcoRII	CCWGG	1 cut(s)	1146
EcoT14I	CCWWGG	1 cut(s)	879
EcoT22I	ATGCAT	3 cut(s)	25, 49, 714
ErhI	CCWWGG	1 cut(s)	879
FaeI	CATG	6 cut(s)	652, 716, 797, 883, 1124, 1164
FalI	AAGNNNNNCTT	2 cut(s)	925, 957
FatI	CATG	6 cut(s)	648, 712, 793, 879, 1120, 1160
FauI	CCCGC	1 cut(s)	591
FblI	GTMKAC	2 cut(s)	440, 744
Fnu4HI	GCNGC	7 cut(s)	6, 309, 333, 336, 367, 798, 1076
FokI	GGATG	1 cut(s)	957
Fsp4HI	GCNGC	7 cut(s)	6, 309, 333, 336, 367, 798, 1076
FspBI	CTAG	2 cut(s)	260, 960
GluI	GCNGC	7 cut(s)	6, 309, 333, 336, 367, 798, 1076
GsuI	CTGGAG	1 cut(s)	846
HaeIII	GGCC	4 cut(s)	430, 806, 884, 1032
HapII	CCGG	1 cut(s)	452
Hin1II	CATG	6 cut(s)	652, 716, 797, 883, 1124, 1164
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	4 cut(s)	38, 652, 872, 1015
HpaI	GTTAAC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	1 cut(s)	975
Hpy166II	GTNNAC	3 cut(s)	33, 441, 745
Hpy188I	TCNGA	6 cut(s)	169, 195, 218, 379, 946, 1196
Hpy188III	TCNNGA	8 cut(s)	113, 413, 452, 469, 649, 662, 1012, 1019
Hpy8I	GTNNAC	3 cut(s)	33, 441, 745
HpyAV	CCTTC	3 cut(s)	200, 338, 637
HpyCH4III	ACNGT	4 cut(s)	475, 493, 550, 811
HpyCH4IV	ACGT	1 cut(s)	1058
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 332, 523, 709, 803
HpyF3I	CTNAG	1 cut(s)	945
HpySE526I	ACGT	1 cut(s)	1058
Hsp92II	CATG	6 cut(s)	652, 716, 797, 883, 1124, 1164
Kpn2I	TCCGGA	1 cut(s)	451
KspAI	GTTAAC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	950
Lsp1109I	GCAGC	6 cut(s)	319, 320, 322, 378, 784, 1087
LweI	GCATC	8 cut(s)	10, 274, 370, 504, 513, 585, 685, 846
MabI	ACCWGGT	1 cut(s)	1146
MaeI	CTAG	2 cut(s)	260, 960
MaeII	ACGT	1 cut(s)	1058
MaeIII	GTNAC	2 cut(s)	544, 966
MboII	GAAGA	4 cut(s)	208, 523, 608, 914
MfeI	CAATTG	1 cut(s)	687
MlsI	TGGCCA	1 cut(s)	806
MluNI	TGGCCA	1 cut(s)	806
MlyI	GAGTC	2 cut(s)	32, 646
MmeI	TCCRAC	1 cut(s)	793
MnlI	CCTC	9 cut(s)	109, 138, 238, 560, 630, 682, 749, 901, 940
Mox20I	TGGCCA	1 cut(s)	806
Mph1103I	ATGCAT	3 cut(s)	25, 49, 714
MroI	TCCGGA	1 cut(s)	451
MroXI	GAANNNNTTC	3 cut(s)	189, 408, 532
MscI	TGGCCA	1 cut(s)	806
MseI	TTAA	5 cut(s)	32, 108, 834, 887, 932
Msp20I	TGGCCA	1 cut(s)	806
MspA1I	CMGCKG	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	886
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	1148
MunI	CAATTG	1 cut(s)	687
Mva1269I	GAATGC	1 cut(s)	1041
MvaI	CCWGG	1 cut(s)	1148
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	5 cut(s)	185, 332, 523, 709, 803
NcoI	CCATGG	1 cut(s)	879
NlaIII	CATG	6 cut(s)	652, 716, 797, 883, 1124, 1164
NlaIV	GGNNCC	2 cut(s)	149, 388
NmuCI	GTSAC	2 cut(s)	544, 966
NsiI	ATGCAT	3 cut(s)	25, 49, 714
NspI	RCATGY	2 cut(s)	1124, 1164
PagI	TCATGA	1 cut(s)	648
PaqCI	CACCTGC	1 cut(s)	741
PctI	GAATGC	1 cut(s)	1041
PdmI	GAANNNNTTC	3 cut(s)	189, 408, 532
PfeI	GAWTC	2 cut(s)	872, 1015
PkrI	GCNGC	7 cut(s)	7, 310, 334, 337, 368, 799, 1077
PleI	GAGTC	2 cut(s)	32, 646
PpsI	GAGTC	2 cut(s)	32, 646
Psp6I	CCWGG	1 cut(s)	1146
PspGI	CCWGG	1 cut(s)	1146
PspN4I	GGNNCC	2 cut(s)	149, 388
PstI	CTGCAG	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	3 cut(s)	162, 850, 1057
RsaNI	GTAC	3 cut(s)	161, 849, 1056
SaqAI	TTAA	5 cut(s)	32, 108, 834, 887, 932
SatI	GCNGC	7 cut(s)	6, 309, 333, 336, 367, 798, 1076
ScaI	AGTACT	1 cut(s)	850
SchI	GAGTC	2 cut(s)	32, 646
ScrFI	CCNGG	1 cut(s)	1148
SexAI	ACCWGGT	1 cut(s)	1146
SfaNI	GCATC	8 cut(s)	10, 274, 370, 504, 513, 585, 685, 846
SfcI	CTRYAG	2 cut(s)	537, 738
SmlI	CTYRAG	2 cut(s)	113, 886
SmoI	CTYRAG	2 cut(s)	113, 886
SsiI	CCGC	2 cut(s)	598, 843
SspI	AATATT	1 cut(s)	156
SspMI	CTAG	2 cut(s)	260, 960
StyD4I	CCNGG	1 cut(s)	1146
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	4 cut(s)	475, 493, 550, 811
TaiI	ACGT	1 cut(s)	1061
TaqI	TCGA	3 cut(s)	183, 295, 916
TatI	WGTACW	2 cut(s)	160, 848
TfiI	GAWTC	2 cut(s)	872, 1015
Tru1I	TTAA	5 cut(s)	32, 108, 834, 887, 932
Tru9I	TTAA	5 cut(s)	32, 108, 834, 887, 932
TscAI	CASTG	2 cut(s)	705, 814
TseFI	GTSAC	2 cut(s)	544, 966
TseI	GCWGC	7 cut(s)	5, 308, 332, 335, 366, 797, 1075
Tsp45I	GTSAC	2 cut(s)	544, 966
TspDTI	ATGAA	3 cut(s)	773, 915, 1097
TspRI	CASTG	2 cut(s)	705, 814
Vha464I	CTTAAG	1 cut(s)	886
XapI	RAATTY	4 cut(s)	212, 570, 722, 925
XceI	RCATGY	2 cut(s)	1124, 1164
XmiI	GTMKAC	2 cut(s)	440, 744
XmnI	GAANNNNTTC	3 cut(s)	189, 408, 532
XspI	CTAG	2 cut(s)	260, 960
ZrmI	AGTACT	1 cut(s)	850
Zsp2I	ATGCAT	3 cut(s)	25, 49, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.