Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008035

Physical Location & Seq

Genomic Coordinates Forward (+)

13618712 .. 13624360

Gene Structure 5649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G149700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGGCTAGTCAAGGCGGTTCTTCTAGAAGAAGTCTGTCATTGACGAACACATCGTTGCAGGACAAGAAGAAATCCTCTGACGTTAGTAACGGAGGCCCTGAATCAGCCCGTAAATCTTTTTCGGCTTCTCGTTCCATCGGGCTAACTGGAGAGCGTACGGTAAAACGCCTGAGGCTATCAAAGGCTCTGACAGTACCTGAAAATACCAGTATTCAAGAAGCGTGTCGTCGAATGGCTGCTCGTAGAGTTGATGCTTTGTTGTTAACTGACTCTAATGCATTGCTCTGTGGAATACTTACGGACAAGGATATAGCAACAAGAGTAATTTCTCGTGAGCTTAATCTCGAGGATACGCTTGTTTCTAAAGTTATGACAAGGAACCCGATATTTGTTCTTTCTGACACTCTCGCTGTTGAAGCCCTTCAAAAAATGGTGCAAGGAAAATTCAGACATTTGCCTGTTGTTGAGAATGGAGAGGTCATTGCTTTACTTGATATAGCAAAGTGCTTATATGATGCTATTGCTCGAATGGAAAGGGCAGCTGAAAAGGGAAAGGCTATTGCTGCTGCTGTGGAAGGTGTTGAAAAACATTGGGGCACATCTACTTCTGGTTCCAATACATTCGTTGAGACACTTCGGGAGCGGTTGTTTAGGCCATCCTTGTCTACAATTATTCCGGAAAGTTCAAAGGTTTTAACAGTTTCACCAACAGATACTGTTTTGATGACAACAAAGAAGATGCAGGAGATGCGAGTGAGCTCTGCTGTTGTGACAGTTGATAACAAGCCACGAGGAATTCTTACTTCAAAAGATATCTTGATGCGGGTAATAGCACAAAATCTTTCTCCGAAGGCCACTCTTGTAGAGAAGGTCATGACTCAAAATCCAGAATGTGCCACAGTTGATACACCAATTGTTGATGCGCTGCATACAATGCATGACGGAAAATTTTTGCACCTTCCTGTAGTAGACAGAGATGGAACTGTTGTTGCTGTTGTTGATGTAATTCATATCACTCATGCTGCTGTAGCTACTGTTGGAAATACTGCTGGAGTCAGCAATGAGGCCGCAAACTCTTTGATGCAAAAGTTTTGGGATTCTGCCATGGCCTTAGGTCCACATGAGGAAGATGAGGATTCTCGAAGTGAAGGGTCATTGAAGTTGGCTTCTGACGGAGCAGAGACAGGGAGATCACTTCCCTTTCCATCGTCAAATTTTCCTAATACGTTTGCTTTCAAACTTCAAGATAAGAGGGGTCGAATGCATAGATTTACTTGCAATATTCAGAGTTTGACAGATCTTATAACCTCCATTGTTCAGAGAATGGGAGATGACATTGACCGCAACAACCTTCCTCAAATTTTGTATGAAGACGAAGACCGTGATAAAGTTATTTTGGCATCAGATAATGATCTTGTAGCAGCTGTGGAACATGCAAAACAAGTTGGTTGGAAGGGTTTGAGACTGCATTTGGATTATTCAGGAACACGCGGTCGCCGAAGGGGTTCAGCAGGAGGAAGTATGGATTATGCTTATGCAGATTCTGCATGGTCATCAGCATACAGTACCGTTGCAGCTGGGGCTGCTCTTGTTGCCGGATTAGGCGTTTTAGCGTACTTGAAGAGATCCGGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS PB1

Protein Analysis

546

Amino Acids

59.05

Weight (kDa)

8.63

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63490 AT5G63490
fragaria_vesca	FvH4_5g08490 FvH4_5g08490 FvH4_5g08490 FvH4_5g08490 FvH4_5g08490 FvH4_5g08490
malus_domestica	MD06G1140500.v1.1 MD14G1155700.v1.1
prunus_persica	Prupe.5G149700_v2.0.a1
pyrus_communis	pycom14g12940
rosa_chinensis	RchiOBHm_Chr7g0189921
rosa_laevigata	RLG00000004577
rosa_multiflora	Rmu_sc0014588.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265050
rosa_rugosa	Rorug06G0500900 Rorug06G0501000 Rorug06G0501100
rosa_samantha	Rh7AG106200 Rh7BG108900 Rh7CG111000 Rh7DG109400
rosa_wichuraiana	Rw7G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1304
AccBSI	CCGCTC	1 cut(s)	643
AccI	GTMKAC	2 cut(s)	665, 969
AccII	CGCG	1 cut(s)	1491
AccIII	TCCGGA	1 cut(s)	676
AciI	CCGC	6 cut(s)	15, 643, 823, 1068, 1342, 1491
AclWI	GGATC	1 cut(s)	1620
AcsI	RAATTY	5 cut(s)	443, 795, 947, 1213, 1359
AfaI	GTAC	4 cut(s)	157, 195, 1567, 1616
AluBI	AGCT	6 cut(s)	337, 542, 759, 1031, 1424, 1577
AluI	AGCT	6 cut(s)	337, 542, 759, 1031, 1424, 1577
Alw21I	GWGCWC	1 cut(s)	761
Alw26I	GTCTC	3 cut(s)	623, 1175, 1456
AlwI	GGATC	1 cut(s)	1620
AlwNI	CAGNNNCTG	3 cut(s)	197, 716, 1544
Ama87I	CYCGRG	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	676
AoxI	GGCC	5 cut(s)	94, 653, 852, 1065, 1107
ApeKI	GCWGC	9 cut(s)	236, 539, 563, 566, 925, 1022, 1421, 1574, 1583
ApoI	RAATTY	5 cut(s)	443, 795, 947, 1213, 1359
Asp700I	GAANNNNTTC	2 cut(s)	420, 1504
AspLEI	GCGC	1 cut(s)	925
AspS9I	GGNCC	2 cut(s)	95, 1115
AsuHPI	GGTGA	1 cut(s)	696
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	1115
AxyI	CCTNAGG	2 cut(s)	170, 1111
BaeGI	GKGCMC	1 cut(s)	599
BaeI	ACNNNNGTAYC	2 cut(s)	342, 375
BanII	GRGCYC	1 cut(s)	761
BauI	CACGAG	2 cut(s)	330, 789
BbsI	GAAGAC	2 cut(s)	1377, 1383
Bbv12I	GWGCWC	1 cut(s)	761
BbvI	GCAGC	9 cut(s)	223, 550, 551, 553, 912, 1009, 1433, 1570, 1586
BccI	CCATC	4 cut(s)	143, 664, 971, 1213
BciVI	GTATCC	1 cut(s)	343
BcoDI	GTCTC	3 cut(s)	623, 1175, 1456
BfaI	CTAG	2 cut(s)	6, 24
BfmI	CTRYAG	2 cut(s)	963, 1026
BfuI	GTATCC	1 cut(s)	343
BglII	AGATCT	1 cut(s)	1297
Bme18I	GGWCC	1 cut(s)	1115
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	2 cut(s)	95, 1115
BmiI	GGNNCC	2 cut(s)	380, 613
BmsI	GCATC	8 cut(s)	241, 505, 729, 738, 810, 910, 1071, 1409
BpiI	GAAGAC	2 cut(s)	1377, 1383
BpmI	CTGGAG	2 cut(s)	168, 1071
BsaBI	GATNNNNATC	1 cut(s)	1410
BsaJI	CCNNGG	1 cut(s)	1104
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	2 cut(s)	632, 662
Bse1I	ACTGG	2 cut(s)	151, 207
Bse21I	CCTNAGG	2 cut(s)	170, 1111
Bse3DI	GCAATG	3 cut(s)	278, 480, 1066
Bse8I	GATNNNNATC	1 cut(s)	1410
BseAI	TCCGGA	1 cut(s)	676
BseDI	CCNNGG	1 cut(s)	1104
BseGI	GGATG	1 cut(s)	656
BseJI	GATNNNNATC	1 cut(s)	1410
BseMI	GCAATG	3 cut(s)	278, 480, 1066
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	151, 207
BseSI	GKGCMC	1 cut(s)	599
BseXI	GCAGC	9 cut(s)	223, 550, 551, 553, 912, 1009, 1433, 1570, 1586
BseYI	CCCAGC	1 cut(s)	1577
Bsh1236I	CGCG	1 cut(s)	1491
Bsh1285I	CGRYCG	1 cut(s)	1495
BshFI	GGCC	5 cut(s)	96, 655, 854, 1067, 1109
BsiEI	CGRYCG	1 cut(s)	1495
BsiHKAI	GWGCWC	1 cut(s)	761
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	3 cut(s)	677, 1596, 1629
BsiWI	CGTACG	1 cut(s)	155
BsmAI	GTCTC	3 cut(s)	623, 1175, 1456
BsmI	GAATGC	1 cut(s)	1266
BsnI	GGCC	5 cut(s)	96, 655, 854, 1067, 1109
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	599, 761
Bsp13I	TCCGGA	1 cut(s)	676
Bsp143I	GATC	4 cut(s)	1190, 1297, 1411, 1625
Bsp19I	CCATGG	1 cut(s)	1104
BspACI	CCGC	6 cut(s)	15, 643, 823, 1068, 1342, 1491
BspANI	GGCC	5 cut(s)	96, 655, 854, 1067, 1109
BspCNI	CTCAG	1 cut(s)	162
BspEI	TCCGGA	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	1491
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	2 cut(s)	380, 613
BspPI	GGATC	1 cut(s)	1620
BsrBI	CCGCTC	1 cut(s)	643
BsrDI	GCAATG	3 cut(s)	278, 480, 1066
BsrI	ACTGG	2 cut(s)	151, 207
BssECI	CCNNGG	1 cut(s)	1104
BssMI	GATC	4 cut(s)	1190, 1297, 1411, 1625
BssSI	CACGAG	2 cut(s)	330, 789
BssT1I	CCWWGG	1 cut(s)	1104
Bst2BI	CACGAG	2 cut(s)	330, 789
Bst6I	CTCTTC	1 cut(s)	1616
BstAPI	GCANNNNNTGC	3 cut(s)	748, 934, 1544
BstDEI	CTNAG	2 cut(s)	170, 1111
BstDSI	CCRYGG	1 cut(s)	1104
BstF5I	GGATG	1 cut(s)	656
BstFNI	CGCG	1 cut(s)	1491
BstHHI	GCGC	1 cut(s)	925
BstKTI	GATC	4 cut(s)	1193, 1300, 1414, 1628
BstMAI	GTCTC	3 cut(s)	623, 1175, 1456
BstMBI	GATC	4 cut(s)	1190, 1297, 1411, 1625
BstMCI	CGRYCG	1 cut(s)	1495
BstMWI	GCNNNNNNNGC	9 cut(s)	416, 563, 748, 934, 1028, 1544, 1580, 1583, 1592
BstNSI	RCATGY	1 cut(s)	1436
BstSFI	CTRYAG	2 cut(s)	963, 1026
BstSLI	GKGCMC	1 cut(s)	599
BstUI	CGCG	1 cut(s)	1491
BstV1I	GCAGC	9 cut(s)	223, 550, 551, 553, 912, 1009, 1433, 1570, 1586
BstV2I	GAAGAC	2 cut(s)	1377, 1383
BstX2I	RGATCY	2 cut(s)	1297, 1625
BstYI	RGATCY	2 cut(s)	1297, 1625
Bsu36I	CCTNAGG	2 cut(s)	170, 1111
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	5 cut(s)	96, 655, 854, 1067, 1109
BtgI	CCRYGG	1 cut(s)	1104
BtsCI	GGATG	1 cut(s)	656
CaiI	CAGNNNCTG	3 cut(s)	197, 716, 1544
CciI	TCATGA	1 cut(s)	873
CfoI	GCGC	1 cut(s)	925
Cfr13I	GGNCC	2 cut(s)	95, 1115
Csp6I	GTAC	4 cut(s)	156, 194, 1566, 1615
CviAII	CATG	7 cut(s)	874, 938, 1019, 1105, 1121, 1433, 1548
CviQI	GTAC	4 cut(s)	156, 194, 1566, 1615
DdeI	CTNAG	2 cut(s)	170, 1111
DpnI	GATC	4 cut(s)	1192, 1299, 1413, 1627
DpnII	GATC	4 cut(s)	1190, 1297, 1411, 1625
Eam1104I	CTCTTC	1 cut(s)	1616
EarI	CTCTTC	1 cut(s)	1616
Ecl136II	GAGCTC	1 cut(s)	759
Eco130I	CCWWGG	1 cut(s)	1104
Eco24I	GRGCYC	1 cut(s)	761
Eco32I	GATATC	1 cut(s)	814
Eco47I	GGWCC	1 cut(s)	1115
Eco53kI	GAGCTC	1 cut(s)	759
Eco81I	CCTNAGG	2 cut(s)	170, 1111
Eco88I	CYCGRG	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	759
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	795
EcoRV	GATATC	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	1104
EcoT22I	ATGCAT	3 cut(s)	280, 939, 1266
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	1 cut(s)	1104
FaeI	CATG	7 cut(s)	877, 941, 1022, 1108, 1124, 1436, 1551
FatI	CATG	7 cut(s)	873, 937, 1018, 1104, 1120, 1432, 1547
FauI	CCCGC	1 cut(s)	816
FblI	GTMKAC	2 cut(s)	665, 969
FokI	GGATG	1 cut(s)	643
FriOI	GRGCYC	1 cut(s)	761
FspBI	CTAG	2 cut(s)	6, 24
GlaI	GCGC	1 cut(s)	924
GsaI	CCCAGC	1 cut(s)	1581
GsuI	CTGGAG	2 cut(s)	168, 1071
HaeIII	GGCC	5 cut(s)	96, 655, 854, 1067, 1109
HapII	CCGG	3 cut(s)	677, 1596, 1629
HhaI	GCGC	1 cut(s)	925
Hin1II	CATG	7 cut(s)	877, 941, 1022, 1108, 1124, 1436, 1551
Hin6I	GCGC	1 cut(s)	923
HinP1I	GCGC	1 cut(s)	923
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HinfI	GANTC	7 cut(s)	101, 269, 877, 1053, 1097, 1136, 1541
HpaI	GTTAAC	1 cut(s)	264
HpaII	CCGG	3 cut(s)	677, 1596, 1629
HphI	GGTGA	1 cut(s)	696
Hpy166II	GTNNAC	4 cut(s)	264, 666, 970, 1118
Hpy188I	TCNGA	9 cut(s)	79, 189, 400, 449, 849, 1171, 1287, 1320, 1405
Hpy8I	GTNNAC	4 cut(s)	264, 666, 970, 1118
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	9 cut(s)	431, 569, 844, 862, 968, 1142, 1361, 1447, 1494
HpyCH4IV	ACGT	2 cut(s)	81, 1226
HpyF10VI	GCNNNNNNNGC	9 cut(s)	416, 563, 748, 934, 1028, 1544, 1580, 1583, 1592
HpyF3I	CTNAG	2 cut(s)	170, 1111
HpySE526I	ACGT	2 cut(s)	81, 1226
Hsp92II	CATG	7 cut(s)	877, 941, 1022, 1108, 1124, 1436, 1551
HspAI	GCGC	1 cut(s)	923
Kpn2I	TCCGGA	1 cut(s)	676
KspAI	GTTAAC	1 cut(s)	264
Kzo9I	GATC	4 cut(s)	1190, 1297, 1411, 1625
LmnI	GCTCC	2 cut(s)	640, 1175
Lsp1109I	GCAGC	9 cut(s)	223, 550, 551, 553, 912, 1009, 1433, 1570, 1586
LweI	GCATC	8 cut(s)	241, 505, 729, 738, 810, 910, 1071, 1409
MaeI	CTAG	2 cut(s)	6, 24
MaeII	ACGT	2 cut(s)	81, 1226
MaeIII	GTNAC	2 cut(s)	86, 769
MalI	GATC	4 cut(s)	1192, 1299, 1413, 1627
MbiI	CCGCTC	1 cut(s)	643
MboI	GATC	4 cut(s)	1190, 1297, 1411, 1625
MboII	GAAGA	8 cut(s)	12, 39, 79, 748, 1139, 1382, 1388, 1633
MfeI	CAATTG	1 cut(s)	912
MflI	RGATCY	2 cut(s)	1297, 1625
MhlI	GDGCHC	2 cut(s)	599, 761
MluCI	AATT	9 cut(s)	324, 443, 669, 795, 912, 947, 1005, 1213, 1359
MlyI	GAGTC	3 cut(s)	263, 871, 1062
MmeI	TCCRAC	2 cut(s)	1018, 1430
Mph1103I	ATGCAT	3 cut(s)	280, 939, 1266
MroI	TCCGGA	1 cut(s)	676
MroXI	GAANNNNTTC	2 cut(s)	420, 1504
MseI	TTAA	3 cut(s)	263, 339, 695
MspA1I	CMGCKG	3 cut(s)	542, 1424, 1577
MspI	CCGG	3 cut(s)	677, 1596, 1629
MunI	CAATTG	1 cut(s)	912
Mva1269I	GAATGC	1 cut(s)	1266
MvnI	CGCG	1 cut(s)	1491
MwoI	GCNNNNNNNGC	9 cut(s)	416, 563, 748, 934, 1028, 1544, 1580, 1583, 1592
NcoI	CCATGG	1 cut(s)	1104
NdeII	GATC	4 cut(s)	1190, 1297, 1411, 1625
NlaIII	CATG	7 cut(s)	877, 941, 1022, 1108, 1124, 1436, 1551
NlaIV	GGNNCC	2 cut(s)	380, 613
NmuCI	GTSAC	1 cut(s)	769
NsiI	ATGCAT	3 cut(s)	280, 939, 1266
NspI	RCATGY	1 cut(s)	1436
PaeR7I	CTCGAG	1 cut(s)	344
PagI	TCATGA	1 cut(s)	873
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 1495
PctI	GAATGC	1 cut(s)	1266
PdmI	GAANNNNTTC	2 cut(s)	420, 1504
PfeI	GAWTC	4 cut(s)	101, 1097, 1136, 1541
Pfl23II	CGTACG	1 cut(s)	155
PleI	GAGTC	3 cut(s)	263, 871, 1061
PpsI	GAGTC	3 cut(s)	263, 871, 1061
PsiI	TTATAA	1 cut(s)	1304
Psp124BI	GAGCTC	1 cut(s)	761
PspFI	CCCAGC	1 cut(s)	1577
PspLI	CGTACG	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	380, 613
PspPI	GGNCC	2 cut(s)	95, 1115
PstNI	CAGNNNCTG	3 cut(s)	197, 716, 1544
PsuI	RGATCY	2 cut(s)	1297, 1625
PvuII	CAGCTG	3 cut(s)	542, 1424, 1577
RsaI	GTAC	4 cut(s)	157, 195, 1567, 1616
RsaNI	GTAC	4 cut(s)	156, 194, 1566, 1615
SacI	GAGCTC	1 cut(s)	761
SaqAI	TTAA	3 cut(s)	263, 339, 695
Sau3AI	GATC	4 cut(s)	1190, 1297, 1411, 1625
Sau96I	GGNCC	2 cut(s)	95, 1115
SchI	GAGTC	3 cut(s)	263, 871, 1062
SduI	GDGCHC	2 cut(s)	599, 761
SfaNI	GCATC	8 cut(s)	241, 505, 729, 738, 810, 910, 1071, 1409
SfcI	CTRYAG	2 cut(s)	963, 1026
Sfr274I	CTCGAG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	1115
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	9 cut(s)	324, 443, 669, 795, 912, 947, 1005, 1213, 1359
SsiI	CCGC	6 cut(s)	15, 643, 823, 1068, 1342, 1491
SspI	AATATT	1 cut(s)	1282
SspMI	CTAG	2 cut(s)	6, 24
SstI	GAGCTC	1 cut(s)	761
StyI	CCWWGG	1 cut(s)	1104
TaiI	ACGT	2 cut(s)	84, 1229
TaqI	TCGA	5 cut(s)	229, 345, 526, 1141, 1258
TasI	AATT	9 cut(s)	324, 443, 669, 795, 912, 947, 1005, 1213, 1359
TauI	GCSGC	1 cut(s)	1070
TfiI	GAWTC	4 cut(s)	101, 1097, 1136, 1541
Tru1I	TTAA	3 cut(s)	263, 339, 695
Tru9I	TTAA	3 cut(s)	263, 339, 695
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	9 cut(s)	236, 539, 563, 566, 925, 1022, 1421, 1574, 1583
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	2 cut(s)	998, 1383
TspGWI	ACGGA	4 cut(s)	105, 314, 957, 1188
VpaK11BI	GGWCC	1 cut(s)	1115
XapI	RAATTY	5 cut(s)	443, 795, 947, 1213, 1359
XbaI	TCTAGA	1 cut(s)	23
XceI	RCATGY	1 cut(s)	1436
XhoI	CTCGAG	1 cut(s)	344
XmiI	GTMKAC	2 cut(s)	665, 969
XmnI	GAANNNNTTC	2 cut(s)	420, 1504
XspI	CTAG	2 cut(s)	6, 24
Zsp2I	ATGCAT	3 cut(s)	280, 939, 1266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.