MD14G1155700.v1.1

CBS domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
24992492 .. 24996738
4247 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1155700.v1.1.491

Sequence Viewer

Length: 1641 bp
ATGGCTAGTCAAGGCGGTTCTTCGAGGAGAAGTCTGTCATTGACGAACACATCGTTGCAGGACAAGAAGAAACCCTCTGATGCTAGTAACGGAGGCCCTGATTCTGCCCGAAAATCTTTCACAGCTTCTCGTTCAATGGGGCTAACTGGAGAGCGCACGGTGAAACGGTTGCGGCTATCAAAGGCTCTGACGGTACCTGAAAATACCAGTGTTCAAGAAGCTTGTCGTCGGATGGCTGCTCGTAGAGTCGATGCTTTGTTGTTAACGGACTCTAATGCATTGCTCTGTGGAATACTTACTGACAAGGATATAGCGACAAGGGTTATTTCTCGTGAGCTTGATCTTGAAGAAACCCTTGTTTCTAAAGTTATGACAAGGAACCCGATATTTGTTCTTTCAGACACTCTTGCTGTTGAGGCCCTTCAGAAAATGGTGCAAGGGAAATTCAGACATTTGCCTGTTGTGGAGAATGGAGAGGTCATTGCTTTACTTGATATAGCAAAGTGTTTATATGATGCCATTGCTCGAATGGAAAGAGCAGCTGAAAAGGGAAAGGCTATTGCTGCTGCTGTGGAAGGTGTTGAAAAACATTGGGGCACATCTGGTTCTGGTTCCAATACATTCGTTGAGACACTTCGAGAGCGGTTGTTTAGACCATCCTTGTCAACAATCATTCCGGAGAGTACAAAGGTTTTAATAGTTTCACCAACAGATACAGTTTTGATGACAACAAAGAAGATGCAGGAAATGCGAGTAAGCTCGGCAGTTGTGACGATTGACAACAAGCCACGAGGAATTCTTACCTCAAAAGATATCTTAATGCGCGTGATATCACAAAATCTTCCTCCGAAGACCACTCTTGTAGAGAAGGTCATGACTCCAAATCCAGAATGTGCTACAGTTGATACACCAATCGTTGATGCGTTGCATACCATGCATGATGGAAAGTTTTTACACATTCCTGTTCTCGACAGAGATGGAGCTGTAGTTGCCGTTGTTGATGTAATTCATATCACTCATGCTGCTGTGGCCACTGTTGGAAATACTGCTGGAGCGAGTAATGAGGCTGCAACCAATATGATGCAAAAGTTTTGGGACTCTGCCATGGCCTTGAGTCCCAATGATGATGACGATGAGTCTCGGAGTGAAGGTTCTTTGAAACTGGCTTCTGAGAGTGCAGTGACAGGGAGATCGCTTCCCTTTCCACCGTCCAATTTTCCAAATACGTTTGCTTTCAAACTTCAAGATAAAAGGGGCCGAATGCATAGATTCACTTGCAACATTCAGAATTTGACAGAACTTATAACCTCCATCATTCAGAGAATGGGAGATGACATTGACCGCAACAACCTTCCTCAAATTTTGTATGAAGATGAGGACCGTGATAAAGTTATATTGGCATCAGATAGTGATCTTGTAGCGGCTGTGGATCATGCAAAGCAAGTTGGTTGGAAGGGTTTGAGACTGCATTTGGATTATTCAGGAACACGCAGTCGCCGGCGAAGGGGTTCAGCTGCAGGAAATGTGGATTATGCATATGCAGATTCTGCATGGGCATCAGCATACAATGCTGCGGCAGCTGGGGCTGCTCTTGCTGTTGGCTTAGGCGTTTTAGCGTACCTGAAGAGATCCGGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

547

Amino Acids

59.23

Weight (kDa)

8.78

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 60 - 107 6.1e-08 CBS domain
CBS PF00571 120 - 164 1e-08 CBS domain
CBS PF00571 228 - 276 3.1e-06 CBS domain
CBS PF00571 288 - 341 1.5e-07 CBS domain
PB1 PF00564 409 - 492 2.2e-15 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1304
Acc65I GGTACC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 193
AccBSI CCGCTC 1 cut(s) 643
AccII CGCG 1 cut(s) 825
AccIII TCCGGA 1 cut(s) 676
AciI CCGC 6 cut(s) 15, 172, 643, 1342, 1421, 1574
AclWI GGATC 2 cut(s) 1437, 1623
AcoI YGGCCR 1 cut(s) 1029
AcsI RAATTY 4 cut(s) 443, 795, 1288, 1359
AcuI CTGAAG 1 cut(s) 407
AfaI GTAC 3 cut(s) 195, 685, 1619
AfiI CCNNNNNNNGG 1 cut(s) 1504
AgsI TTSAA 7 cut(s) 135, 215, 347, 584, 1159, 1237, 1244
AhdI GACNNNNNGTC 1 cut(s) 1135
AloI GAACNNNNNNTCC 2 cut(s) 1135, 1167
AluBI AGCT 8 cut(s) 125, 221, 337, 542, 759, 983, 1514, 1580
AluI AGCT 8 cut(s) 125, 221, 337, 542, 759, 983, 1514, 1580
Alw26I GTCTC 3 cut(s) 623, 1143, 1456
AlwI GGATC 2 cut(s) 1437, 1623
AlwNI CAGNNNCTG 1 cut(s) 1547
Aor13HI TCCGGA 1 cut(s) 676
AoxI GGCC 5 cut(s) 94, 417, 1029, 1107, 1255
ApoI RAATTY 4 cut(s) 443, 795, 1288, 1359
Asp700I GAANNNNTTC 1 cut(s) 1507
Asp718I GGTACC 1 cut(s) 193
AspLEI GCGC 2 cut(s) 156, 825
AspS9I GGNCC 4 cut(s) 95, 418, 1255, 1378
AsuHPI GGTGA 2 cut(s) 172, 696
AvaII GGWCC 1 cut(s) 1378
BaeGI GKGCMC 1 cut(s) 599
BalI TGGCCA 1 cut(s) 1031
BanI GGYRCC 1 cut(s) 193
BauI CACGAG 2 cut(s) 330, 789
BbsI GAAGAC 1 cut(s) 857
BccI CCATC 5 cut(s) 226, 664, 935, 971, 1319
BceAI ACGGC 1 cut(s) 977
BcoDI GTCTC 3 cut(s) 623, 1143, 1456
BfaI CTAG 2 cut(s) 6, 84
BfmI CTRYAG 3 cut(s) 897, 984, 1515
Bme18I GGWCC 1 cut(s) 1378
BmeRI GACNNNNNGTC 1 cut(s) 1135
BmgT120I GGNCC 4 cut(s) 95, 418, 1255, 1378
BmiI GGNNCC 4 cut(s) 195, 380, 613, 1256
BmsI GCATC 8 cut(s) 70, 241, 505, 729, 910, 1071, 1409, 1565
BpiI GAAGAC 1 cut(s) 857
BpmI CTGGAG 2 cut(s) 168, 1071
Bpu10I CCTNAGC 1 cut(s) 1603
BpuEI CTTGAG 1 cut(s) 1132
BsaBI GATNNNNATC 1 cut(s) 1410
BsaJI CCNNGG 1 cut(s) 1104
BsaWI WCCGGW 2 cut(s) 676, 1631
BsaXI ACNNNNNCTCC 4 cut(s) 972, 1002, 1135, 1165
Bsc4I CCNNNNNNNGG 1 cut(s) 1504
Bse118I RCCGGY 1 cut(s) 1497
Bse1I ACTGG 3 cut(s) 151, 207, 1167
Bse3DI GCAATG 3 cut(s) 278, 480, 519
Bse8I GATNNNNATC 1 cut(s) 1410
BseAI TCCGGA 1 cut(s) 676
BseDI CCNNGG 1 cut(s) 1104
BseGI GGATG 2 cut(s) 237, 656
BseJI GATNNNNATC 1 cut(s) 1410
BseLI CCNNNNNNNGG 1 cut(s) 1504
BseMI GCAATG 3 cut(s) 278, 480, 519
BseMII CTCAG 1 cut(s) 1161
BseNI ACTGG 3 cut(s) 151, 207, 1167
BseRI GAGGAG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 599
BseYI CCCAGC 1 cut(s) 1580
BsgI GTGCAG 1 cut(s) 1197
Bsh1236I CGCG 1 cut(s) 825
BshFI GGCC 5 cut(s) 96, 419, 1031, 1109, 1257
BshNI GGYRCC 1 cut(s) 193
BsiSI CCGG 3 cut(s) 677, 1498, 1632
BslFI GGGAC 2 cut(s) 1101, 1109
BslI CCNNNNNNNGG 1 cut(s) 1504
BsmAI GTCTC 3 cut(s) 623, 1143, 1456
BsmFI GGGAC 2 cut(s) 1101, 1109
BsmI GAATGC 1 cut(s) 1266
BsnI GGCC 5 cut(s) 96, 419, 1031, 1109, 1257
Bsp1286I GDGCHC 1 cut(s) 599
Bsp13I TCCGGA 1 cut(s) 676
Bsp143I GATC 5 cut(s) 340, 1190, 1411, 1429, 1628
Bsp19I CCATGG 1 cut(s) 1104
BspACI CCGC 6 cut(s) 15, 172, 643, 1342, 1421, 1574
BspANI GGCC 5 cut(s) 96, 419, 1031, 1109, 1257
BspCNI CTCAG 1 cut(s) 1162
BspEI TCCGGA 1 cut(s) 676
BspFNI CGCG 1 cut(s) 825
BspHI TCATGA 1 cut(s) 873
BspLI GGNNCC 4 cut(s) 195, 380, 613, 1256
BspMAI CTGCAG 1 cut(s) 1519
BspPI GGATC 2 cut(s) 1437, 1623
BspT107I GGYRCC 1 cut(s) 193
BsrBI CCGCTC 1 cut(s) 643
BsrDI GCAATG 3 cut(s) 278, 480, 519
BsrFI RCCGGY 1 cut(s) 1497
BsrI ACTGG 3 cut(s) 151, 207, 1167
BssAI RCCGGY 1 cut(s) 1497
BssECI CCNNGG 1 cut(s) 1104
BssMI GATC 5 cut(s) 340, 1190, 1411, 1429, 1628
BssSI CACGAG 2 cut(s) 330, 789
BssT1I CCWWGG 1 cut(s) 1104
Bst2BI CACGAG 2 cut(s) 330, 789
Bst4CI ACNGT 8 cut(s) 160, 168, 193, 718, 901, 1036, 1209, 1382
Bst6I CTCTTC 1 cut(s) 1619
BstAPI GCANNNNNTGC 4 cut(s) 748, 934, 1547, 1568
BstC8I GCNNGC 1 cut(s) 1499
BstDEI CTNAG 2 cut(s) 1170, 1603
BstDSI CCRYGG 1 cut(s) 1104
BstF5I GGATG 2 cut(s) 237, 656
BstFNI CGCG 1 cut(s) 825
BstHHI GCGC 2 cut(s) 156, 825
BstKTI GATC 5 cut(s) 343, 1193, 1414, 1432, 1631
BstMAI GTCTC 3 cut(s) 623, 1143, 1456
BstMBI GATC 5 cut(s) 340, 1190, 1411, 1429, 1628
BstSFI CTRYAG 3 cut(s) 897, 984, 1515
BstSLI GKGCMC 1 cut(s) 599
BstUI CGCG 1 cut(s) 825
BstV2I GAAGAC 1 cut(s) 857
BstX2I RGATCY 1 cut(s) 1628
BstYI RGATCY 1 cut(s) 1628
BsuRI GGCC 5 cut(s) 96, 419, 1031, 1109, 1257
BtgI CCRYGG 1 cut(s) 1104
BtsCI GGATG 2 cut(s) 237, 656
BtsI GCAGTG 1 cut(s) 1185
BtsIMutI CAGTG 3 cut(s) 214, 1032, 1185
Cac8I GCNNGC 1 cut(s) 1499
CaiI CAGNNNCTG 1 cut(s) 1547
CciI TCATGA 1 cut(s) 873
CfoI GCGC 2 cut(s) 156, 825
Cfr10I RCCGGY 1 cut(s) 1497
Cfr13I GGNCC 4 cut(s) 95, 418, 1255, 1378
Csp6I GTAC 3 cut(s) 194, 684, 1618
CviAII CATG 7 cut(s) 874, 934, 938, 1019, 1105, 1433, 1551
CviQI GTAC 3 cut(s) 194, 684, 1618
DdeI CTNAG 2 cut(s) 1170, 1603
DpnI GATC 5 cut(s) 342, 1192, 1413, 1431, 1630
DpnII GATC 5 cut(s) 340, 1190, 1411, 1429, 1628
DriI GACNNNNNGTC 1 cut(s) 1135
EaeI YGGCCR 1 cut(s) 1029
Eam1104I CTCTTC 1 cut(s) 1619
Eam1105I GACNNNNNGTC 1 cut(s) 1135
EarI CTCTTC 1 cut(s) 1619
Eco130I CCWWGG 1 cut(s) 1104
Eco32I GATATC 2 cut(s) 814, 831
Eco47I GGWCC 1 cut(s) 1378
Eco57I CTGAAG 1 cut(s) 407
EcoO109I RGGNCCY 2 cut(s) 95, 418
EcoRI GAATTC 1 cut(s) 795
EcoRV GATATC 2 cut(s) 814, 831
EcoT14I CCWWGG 1 cut(s) 1104
EcoT22I ATGCAT 4 cut(s) 280, 939, 1266, 1537
ErhI CCWWGG 1 cut(s) 1104
FaeI CATG 7 cut(s) 877, 937, 941, 1022, 1108, 1436, 1554
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 2 cut(s) 1101, 1109
FatI CATG 7 cut(s) 873, 933, 937, 1018, 1104, 1432, 1550
FauNDI CATATG 1 cut(s) 1537
FokI GGATG 2 cut(s) 244, 643
FspBI CTAG 2 cut(s) 6, 84
GlaI GCGC 2 cut(s) 155, 824
GsaI CCCAGC 1 cut(s) 1584
GsuI CTGGAG 2 cut(s) 168, 1071
HaeIII GGCC 5 cut(s) 96, 419, 1031, 1109, 1257
HapII CCGG 3 cut(s) 677, 1498, 1632
HhaI GCGC 2 cut(s) 156, 825
Hin1II CATG 7 cut(s) 877, 937, 941, 1022, 1108, 1436, 1554
Hin6I GCGC 2 cut(s) 154, 823
HinP1I GCGC 2 cut(s) 154, 823
HincII GTYRAC 2 cut(s) 264, 666
HindII GTYRAC 2 cut(s) 264, 666
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 9 cut(s) 101, 246, 269, 877, 1097, 1114, 1136, 1269, 1544
HpaI GTTAAC 1 cut(s) 264
HpaII CCGG 3 cut(s) 677, 1498, 1632
HphI GGTGA 2 cut(s) 172, 696
Hpy166II GTNNAC 2 cut(s) 264, 666
Hpy8I GTNNAC 2 cut(s) 264, 666
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 7 cut(s) 431, 569, 862, 1142, 1361, 1447, 1497
HpyCH4III ACNGT 8 cut(s) 160, 168, 193, 718, 901, 1036, 1209, 1382
HpyCH4IV ACGT 1 cut(s) 1226
HpyF3I CTNAG 2 cut(s) 1170, 1603
HpySE526I ACGT 1 cut(s) 1226
Hsp92II CATG 7 cut(s) 877, 937, 941, 1022, 1108, 1436, 1554
HspAI GCGC 2 cut(s) 154, 823
Kpn2I TCCGGA 1 cut(s) 676
KpnI GGTACC 1 cut(s) 197
KroI GCCGGC 1 cut(s) 1497
KroNI GCCGGC 1 cut(s) 1499
KspAI GTTAAC 1 cut(s) 264
Kzo9I GATC 5 cut(s) 340, 1190, 1411, 1429, 1628
LmnI GCTCC 2 cut(s) 980, 1052
LweI GCATC 8 cut(s) 70, 241, 505, 729, 910, 1071, 1409, 1565
MaeI CTAG 2 cut(s) 6, 84
MaeII ACGT 1 cut(s) 1226
MaeIII GTNAC 4 cut(s) 86, 769, 1180, 1634
MalI GATC 5 cut(s) 342, 1192, 1413, 1431, 1630
MbiI CCGCTC 1 cut(s) 643
MboI GATC 5 cut(s) 340, 1190, 1411, 1429, 1628
MboII GAAGA 8 cut(s) 12, 79, 359, 748, 833, 862, 1382, 1636
MflI RGATCY 1 cut(s) 1628
MhlI GDGCHC 1 cut(s) 599
MlsI TGGCCA 1 cut(s) 1031
MluCI AATT 6 cut(s) 443, 795, 1005, 1213, 1288, 1359
MluNI TGGCCA 1 cut(s) 1031
MlyI GAGTC 6 cut(s) 255, 263, 871, 1091, 1123, 1145
MmeI TCCRAC 3 cut(s) 209, 1018, 1430
Mox20I TGGCCA 1 cut(s) 1031
Mph1103I ATGCAT 4 cut(s) 280, 939, 1266, 1537
MreI CGCCGGCG 1 cut(s) 1497
MroI TCCGGA 1 cut(s) 676
MroNI GCCGGC 1 cut(s) 1497
MroXI GAANNNNTTC 1 cut(s) 1507
MscI TGGCCA 1 cut(s) 1031
MseI TTAA 3 cut(s) 263, 695, 818
Msp20I TGGCCA 1 cut(s) 1031
MspA1I CMGCKG 3 cut(s) 542, 1514, 1580
MspI CCGG 3 cut(s) 677, 1498, 1632
Mva1269I GAATGC 1 cut(s) 1266
MvnI CGCG 1 cut(s) 825
NaeI GCCGGC 1 cut(s) 1499
NcoI CCATGG 1 cut(s) 1104
NdeI CATATG 1 cut(s) 1537
NdeII GATC 5 cut(s) 340, 1190, 1411, 1429, 1628
NgoMIV GCCGGC 1 cut(s) 1497
NlaIII CATG 7 cut(s) 877, 937, 941, 1022, 1108, 1436, 1554
NlaIV GGNNCC 4 cut(s) 195, 380, 613, 1256
NmeAIII GCCGAG 1 cut(s) 740
NmuCI GTSAC 2 cut(s) 769, 1180
NsiI ATGCAT 4 cut(s) 280, 939, 1266, 1537
PagI TCATGA 1 cut(s) 873
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PctI GAATGC 1 cut(s) 1266
PdiI GCCGGC 1 cut(s) 1499
PdmI GAANNNNTTC 1 cut(s) 1507
PfeI GAWTC 3 cut(s) 101, 1269, 1544
PleI GAGTC 6 cut(s) 254, 263, 871, 1091, 1122, 1144
PpsI GAGTC 6 cut(s) 254, 263, 871, 1091, 1122, 1144
PsiI TTATAA 1 cut(s) 1304
PspFI CCCAGC 1 cut(s) 1580
PspN4I GGNNCC 4 cut(s) 195, 380, 613, 1256
PspPI GGNCC 4 cut(s) 95, 418, 1255, 1378
PstI CTGCAG 1 cut(s) 1519
PstNI CAGNNNCTG 1 cut(s) 1547
PsuI RGATCY 1 cut(s) 1628
PvuII CAGCTG 3 cut(s) 542, 1514, 1580
RsaI GTAC 3 cut(s) 195, 685, 1619
RsaNI GTAC 3 cut(s) 194, 684, 1618
SaqAI TTAA 3 cut(s) 263, 695, 818
Sau3AI GATC 5 cut(s) 340, 1190, 1411, 1429, 1628
Sau96I GGNCC 4 cut(s) 95, 418, 1255, 1378
SchI GAGTC 6 cut(s) 255, 263, 871, 1091, 1123, 1145
SduI GDGCHC 1 cut(s) 599
SfaNI GCATC 8 cut(s) 70, 241, 505, 729, 910, 1071, 1409, 1565
SfcI CTRYAG 3 cut(s) 897, 984, 1515
SgrAI CRCCGGYG 1 cut(s) 1497
SinI GGWCC 1 cut(s) 1378
SmlI CTYRAG 1 cut(s) 1111
SmoI CTYRAG 1 cut(s) 1111
Sse9I AATT 6 cut(s) 443, 795, 1005, 1213, 1288, 1359
SsiI CCGC 6 cut(s) 15, 172, 643, 1342, 1421, 1574
SspMI CTAG 2 cut(s) 6, 84
StyI CCWWGG 1 cut(s) 1104
TaaI ACNGT 8 cut(s) 160, 168, 193, 718, 901, 1036, 1209, 1382
TaiI ACGT 1 cut(s) 1229
TaqI TCGA 5 cut(s) 23, 249, 526, 637, 969
TasI AATT 6 cut(s) 443, 795, 1005, 1213, 1288, 1359
TatI WGTACW 1 cut(s) 683
TauI GCSGC 3 cut(s) 175, 1424, 1577
TfiI GAWTC 3 cut(s) 101, 1269, 1544
Tru1I TTAA 3 cut(s) 263, 695, 818
Tru9I TTAA 3 cut(s) 263, 695, 818
TscAI CASTG 3 cut(s) 214, 1039, 1185
TseFI GTSAC 2 cut(s) 769, 1180
Tsp45I GTSAC 2 cut(s) 769, 1180
TspDTI ATGAA 2 cut(s) 998, 1383
TspGWI ACGGA 2 cut(s) 105, 281
TspRI CASTG 3 cut(s) 214, 1039, 1185
VpaK11BI GGWCC 1 cut(s) 1378
XapI RAATTY 4 cut(s) 443, 795, 1288, 1359
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 1507
XspI CTAG 2 cut(s) 6, 84
Zsp2I ATGCAT 4 cut(s) 280, 939, 1266, 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.