FvH4_5g08490

CBS domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
4903868 .. 4908135
4268 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08490.t7

Sequence Viewer

Length: 1665 bp
ATGGCTAGTCAAGGCGGTTCTTCGAGGAGAAGCCTGTCGTTGACGAACGCATCGTTGCAGGAGAAGAAGAAATCCTCTGACCATCTCCATCATCATGGAGCTGGAGGAGGCCATGAGCCATCCAGAAAATCGACTTCGTCGGCTCGTCCTCCAGTGGGGTTAGCAGGAGAGCGAACAGTAAAGCGGCTGCGGCTATCAAAGGCTCTAACAGTACCTGAAAGTACTAGTGTTCAAGAGGCATGTCGCCGGATGGCTGCTCGGAGAGTTGATGCGTTGTTGTTAACTGACTCTAATGCATTGCTTTGTGGAATACTTACCGACAAGGACATAGCAACAAGAGTTATTGCACGAGAGCTTAGTCTTGAGGAAACACTTGTTTCTAAAGTTATGACGAGGAACCCAATATTTGTACTCTCTGACACTCTTGCAGTCGAAGCCCTTCAGAAGATGGTTCAAGGAAAATTCAGACATTTGCCTGTGGTGGAGAATGGAGAGGTCATTGCTTTACTTGATATAGCAAAGTGTTTGTATGATGCCATTGCGCGAATGGAAAGGGCAGCTGAAAAGGGAAAGGCTATAGCTGCTGCTGTGGAAGGTGTTGAAAAACATTGGGGCACCTCTAGTTCTGGTTCCAATACATTTGTTGAAACACTTCGTGAAAAGTTATTTAGGCCATCGTTGTCTACAATCATTCCGGAGAATACAAAGGTCTTGACAGTTTCACCCACAGATACAGTTTTGGCAGCAGCAAAGAAGATGCAAGAGATGCGAATTAGTTCTGCAGTTGTGACAGTTGATAACAAGCCACGAGGAATCCTTACTTCTAAGGATATTTTGATGCGGGTCATATCACAAAATCTTTCTCCGAAGACCACCCTTGTAGAGAAGGTCATGACTCCAAATCCAGAATGTGCCTCAGTTGATACACCAATTGTTGATGCACTGCACACTATGCATGATGGAAAATTTCTGCACCTGCCTGTAGTAGACAGAGATGGAGCTGTAGTTGCTGTGGTTGATGTAATTCATATCACTCATGCTGCTGTGGCCACTGTTGGAAATAGTGCTGGAGTGAGTAATGAAAACGCAAATACTATGATGCAGAAGTTTTGGGATTCTGCCATGGCCTTAACTCCAACTGATGAGGATGAGGATTGTCGGAGTGAAAATTCTTTAAGACTGGCTTCAGAGGGAGCAGAGACTAGGGTGTCACATCCCTTTCCATCAACAGTTTTTCCAAATACTTTTGCCTTCAAGCTTCAGGATAAGAAAGGCCGAATGCACAGATTTACTTGCAATATTCAGAGTTTGACTGATCTTATAACTTCCATTATTCATAGAATGGGAGATGACATTGACCGGCACAACCTTCCTCAAATTTTGTATGAAGACGAAGACCATGATAAAGTACTATTGGCATCCGATAGTGATCTCGCTGCAGCCGTGGACCATGCAAGGCAAGTTGGTTGGAAGGGCTTGAGATTGCATTTAGATTTCTCGGGAACAGCTGGTCGTCGTCGAAAAACTACAACTGCTGGAGGAAGCGTGGATTATGCTTATGCAGATTCTGCTTGGGCATCAGCATACAGTGCCGCGGCAGCTGGGGCTGCACTTGTAGCAGGCTTTGGCGTTTTGGCATACTTGAAAAGATCCGGCAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

555

Amino Acids

59.88

Weight (kDa)

8.4

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 43 - 87 8.6e-09 CBS domain
CBS PF00571 153 - 201 1.1e-09 CBS domain
CBS PF00571 213 - 266 1.4e-08 CBS domain
PB1 PF00564 334 - 417 1.9e-16 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1322
AarI CACCTGC 1 cut(s) 984
AasI GACNNNNNNGTC 1 cut(s) 1207
Acc36I ACCTGC 1 cut(s) 984
AccB1I GGYRCC 1 cut(s) 614
AccI GTMKAC 2 cut(s) 683, 987
AccII CGCG 2 cut(s) 544, 1595
AccIII TCCGGA 1 cut(s) 694
AciI CCGC 6 cut(s) 15, 184, 190, 841, 1593, 1595
AclWI GGATC 1 cut(s) 1644
AcoI YGGCCR 1 cut(s) 1047
AcsI RAATTY 4 cut(s) 461, 965, 1168, 1377
AcuI CTGAAG 3 cut(s) 425, 1170, 1244
AdeI CACNNNGTG 1 cut(s) 656
AfaI GTAC 4 cut(s) 213, 223, 411, 1410
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 6 cut(s) 233, 455, 602, 647, 1255, 1645
AhlI ACTAGT 1 cut(s) 224
AluBI AGCT 8 cut(s) 101, 355, 560, 581, 1001, 1258, 1508, 1601
AluI AGCT 8 cut(s) 101, 355, 560, 581, 1001, 1258, 1508, 1601
Alw26I GTCTC 1 cut(s) 1193
AlwI GGATC 1 cut(s) 1644
AlwNI CAGNNNCTG 2 cut(s) 215, 1568
Ama87I CYCGRG 1 cut(s) 1498
Aor13HI TCCGGA 1 cut(s) 694
AoxI GGCC 5 cut(s) 109, 671, 1047, 1125, 1273
ApoI RAATTY 4 cut(s) 461, 965, 1168, 1377
Asp700I GAANNNNTTC 3 cut(s) 438, 651, 775
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 1 cut(s) 1447
AsuHPI GGTGA 1 cut(s) 714
AvaI CYCGRG 1 cut(s) 1498
AvaII GGWCC 1 cut(s) 1447
BaeGI GKGCMC 1 cut(s) 617
BalI TGGCCA 1 cut(s) 1049
BanI GGYRCC 1 cut(s) 614
BauI CACGAG 2 cut(s) 348, 807
BbsI GAAGAC 3 cut(s) 875, 1395, 1401
BccI CCATC 9 cut(s) 90, 96, 127, 244, 442, 682, 953, 989, 1231
BceAI ACGGC 1 cut(s) 1427
BcoDI GTCTC 1 cut(s) 1193
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 4 cut(s) 6, 225, 621, 1203
BfmI CTRYAG 5 cut(s) 576, 780, 981, 1002, 1437
BfuAI ACCTGC 1 cut(s) 984
BmcAI AGTACT 2 cut(s) 223, 1410
Bme18I GGWCC 1 cut(s) 1447
BmeT110I CYCGRG 1 cut(s) 1498
BmgT120I GGNCC 1 cut(s) 1447
BmiI GGNNCC 3 cut(s) 398, 616, 631
BpiI GAAGAC 3 cut(s) 875, 1395, 1401
BpmI CTGGAG 4 cut(s) 123, 135, 1089, 1557
BpuEI CTTGAG 2 cut(s) 383, 1498
BsaBI GATNNNNATC 1 cut(s) 1428
BsaJI CCNNGG 3 cut(s) 1122, 1443, 1593
BsaWI WCCGGW 1 cut(s) 694
BsaXI ACNNNNNCTCC 4 cut(s) 990, 1020, 1530, 1560
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 1359
Bse1I ACTGG 2 cut(s) 152, 1185
Bse3DI GCAATG 3 cut(s) 296, 498, 537
Bse8I GATNNNNATC 1 cut(s) 1428
BseAI TCCGGA 1 cut(s) 694
BseDI CCNNGG 3 cut(s) 1122, 1443, 1593
BseGI GGATG 5 cut(s) 119, 255, 1153, 1213, 1418
BseJI GATNNNNATC 1 cut(s) 1428
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMI GCAATG 3 cut(s) 296, 498, 537
BseMII CTCAG 1 cut(s) 930
BseNI ACTGG 2 cut(s) 152, 1185
BseRI GAGGAG 2 cut(s) 40, 120
BseSI GKGCMC 1 cut(s) 617
BseYI CCCAGC 1 cut(s) 1601
BsgI GTGCAG 3 cut(s) 929, 956, 1593
Bsh1236I CGCG 2 cut(s) 544, 1595
BshFI GGCC 5 cut(s) 111, 673, 1049, 1127, 1275
BshNI GGYRCC 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 1498
BsiSI CCGG 4 cut(s) 247, 695, 1360, 1653
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 1193
BsmI GAATGC 1 cut(s) 1284
BsnI GGCC 5 cut(s) 111, 673, 1049, 1127, 1275
BsoBI CYCGRG 1 cut(s) 1498
Bsp1286I GDGCHC 1 cut(s) 617
Bsp13I TCCGGA 1 cut(s) 694
Bsp143I GATC 3 cut(s) 1315, 1429, 1649
Bsp19I CCATGG 1 cut(s) 1122
BspACI CCGC 6 cut(s) 15, 184, 190, 841, 1593, 1595
BspANI GGCC 5 cut(s) 111, 673, 1049, 1127, 1275
BspCNI CTCAG 1 cut(s) 929
BspEI TCCGGA 1 cut(s) 694
BspFNI CGCG 2 cut(s) 544, 1595
BspHI TCATGA 1 cut(s) 891
BspLI GGNNCC 3 cut(s) 398, 616, 631
BspMAI CTGCAG 2 cut(s) 784, 1441
BspMI ACCTGC 1 cut(s) 984
BspPI GGATC 1 cut(s) 1644
BspT107I GGYRCC 1 cut(s) 614
BsrDI GCAATG 3 cut(s) 296, 498, 537
BsrFI RCCGGY 1 cut(s) 1359
BsrI ACTGG 2 cut(s) 152, 1185
BssAI RCCGGY 1 cut(s) 1359
BssECI CCNNGG 3 cut(s) 1122, 1443, 1593
BssMI GATC 3 cut(s) 1315, 1429, 1649
BssSI CACGAG 2 cut(s) 348, 807
BssT1I CCWWGG 1 cut(s) 1122
Bst2BI CACGAG 2 cut(s) 348, 807
Bst4CI ACNGT 8 cut(s) 178, 211, 718, 736, 793, 1054, 1231, 1589
BstAPI GCANNNNNTGC 4 cut(s) 766, 952, 1568, 1589
BstC8I GCNNGC 1 cut(s) 1621
BstDEI CTNAG 3 cut(s) 356, 825, 916
BstDSI CCRYGG 3 cut(s) 1122, 1443, 1593
BstF5I GGATG 5 cut(s) 119, 255, 1153, 1213, 1418
BstFNI CGCG 2 cut(s) 544, 1595
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 3 cut(s) 1318, 1432, 1652
BstMAI GTCTC 1 cut(s) 1193
BstMBI GATC 3 cut(s) 1315, 1429, 1649
BstNSI RCATGY 1 cut(s) 243
BstSFI CTRYAG 5 cut(s) 576, 780, 981, 1002, 1437
BstSLI GKGCMC 1 cut(s) 617
BstUI CGCG 2 cut(s) 544, 1595
BstV2I GAAGAC 3 cut(s) 875, 1395, 1401
BstX2I RGATCY 1 cut(s) 1649
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 1649
BsuRI GGCC 5 cut(s) 111, 673, 1049, 1127, 1275
BtgI CCRYGG 3 cut(s) 1122, 1443, 1593
BtsCI GGATG 5 cut(s) 119, 255, 1153, 1213, 1418
BtsI GCAGTG 1 cut(s) 941
BtsIMutI CAGTG 4 cut(s) 159, 941, 1050, 1594
BveI ACCTGC 1 cut(s) 984
Cac8I GCNNGC 1 cut(s) 1621
CaiI CAGNNNCTG 2 cut(s) 215, 1568
CciI TCATGA 1 cut(s) 891
CfoI GCGC 1 cut(s) 544
Cfr10I RCCGGY 1 cut(s) 1359
Cfr13I GGNCC 1 cut(s) 1447
Cfr42I CCGCGG 1 cut(s) 1596
Csp6I GTAC 4 cut(s) 212, 222, 410, 1409
CviAII CATG 9 cut(s) 95, 113, 240, 892, 956, 1037, 1123, 1400, 1451
CviQI GTAC 4 cut(s) 212, 222, 410, 1409
DdeI CTNAG 3 cut(s) 356, 825, 916
DpnI GATC 3 cut(s) 1317, 1431, 1651
DpnII GATC 3 cut(s) 1315, 1429, 1649
DraIII CACNNNGTG 1 cut(s) 656
DrdI GACNNNNNNGTC 1 cut(s) 1207
DseDI GACNNNNNNGTC 1 cut(s) 1207
EaeI YGGCCR 1 cut(s) 1047
Eco130I CCWWGG 1 cut(s) 1122
Eco47I GGWCC 1 cut(s) 1447
Eco57I CTGAAG 3 cut(s) 425, 1170, 1244
Eco88I CYCGRG 1 cut(s) 1498
EcoT14I CCWWGG 1 cut(s) 1122
EcoT22I ATGCAT 2 cut(s) 298, 957
ErhI CCWWGG 1 cut(s) 1122
FaeI CATG 9 cut(s) 98, 116, 243, 895, 959, 1040, 1126, 1403, 1454
FalI AAGNNNNNCTT 2 cut(s) 1168, 1200
FatI CATG 9 cut(s) 94, 112, 239, 891, 955, 1036, 1122, 1399, 1450
FauI CCCGC 1 cut(s) 834
FblI GTMKAC 2 cut(s) 683, 987
FokI GGATG 5 cut(s) 106, 262, 1160, 1200, 1405
FspBI CTAG 4 cut(s) 6, 225, 621, 1203
GlaI GCGC 1 cut(s) 543
GsaI CCCAGC 1 cut(s) 1605
GsuI CTGGAG 4 cut(s) 123, 135, 1089, 1557
HaeIII GGCC 5 cut(s) 111, 673, 1049, 1127, 1275
HapII CCGG 4 cut(s) 247, 695, 1360, 1653
HhaI GCGC 1 cut(s) 544
Hin1II CATG 9 cut(s) 98, 116, 243, 895, 959, 1040, 1126, 1403, 1454
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HincII GTYRAC 2 cut(s) 42, 282
HindII GTYRAC 2 cut(s) 42, 282
HindIII AAGCTT 1 cut(s) 1256
HinfI GANTC 5 cut(s) 287, 813, 895, 1115, 1565
HpaI GTTAAC 1 cut(s) 282
HpaII CCGG 4 cut(s) 247, 695, 1360, 1653
HphI GGTGA 1 cut(s) 714
Hpy166II GTNNAC 5 cut(s) 42, 282, 684, 988, 1447
Hpy8I GTNNAC 5 cut(s) 42, 282, 684, 988, 1447
Hpy99I CGWCG 3 cut(s) 142, 1518, 1521
HpyAV CCTTC 6 cut(s) 449, 587, 880, 1261, 1379, 1465
HpyCH4III ACNGT 8 cut(s) 178, 211, 718, 736, 793, 1054, 1231, 1589
HpyF3I CTNAG 3 cut(s) 356, 825, 916
Hsp92II CATG 9 cut(s) 98, 116, 243, 895, 959, 1040, 1126, 1403, 1454
HspAI GCGC 1 cut(s) 542
Kpn2I TCCGGA 1 cut(s) 694
KspAI GTTAAC 1 cut(s) 282
KspI CCGCGG 1 cut(s) 1596
Kzo9I GATC 3 cut(s) 1315, 1429, 1649
LmnI GCTCC 3 cut(s) 98, 998, 1193
MaeI CTAG 4 cut(s) 6, 225, 621, 1203
MaeIII GTNAC 2 cut(s) 787, 1209
MalI GATC 3 cut(s) 1317, 1431, 1651
MboI GATC 3 cut(s) 1315, 1429, 1649
MboII GAAGA 8 cut(s) 12, 76, 79, 457, 766, 880, 1400, 1406
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 1 cut(s) 1649
MhlI GDGCHC 1 cut(s) 617
MlsI TGGCCA 1 cut(s) 1049
MluCI AATT 8 cut(s) 461, 771, 930, 965, 1023, 1168, 1377, 1660
MluNI TGGCCA 1 cut(s) 1049
MlyI GAGTC 2 cut(s) 281, 889
MmeI TCCRAC 4 cut(s) 1036, 1139, 1160, 1448
Mox20I TGGCCA 1 cut(s) 1049
Mph1103I ATGCAT 2 cut(s) 298, 957
MroI TCCGGA 1 cut(s) 694
MroXI GAANNNNTTC 3 cut(s) 438, 651, 775
MscI TGGCCA 1 cut(s) 1049
MseI TTAA 3 cut(s) 281, 1130, 1175
MslI CAYNNNNRTG 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 1049
MspA1I CMGCKG 4 cut(s) 560, 1508, 1595, 1601
MspI CCGG 4 cut(s) 247, 695, 1360, 1653
MunI CAATTG 1 cut(s) 930
Mva1269I GAATGC 1 cut(s) 1284
MvnI CGCG 2 cut(s) 544, 1595
NcoI CCATGG 1 cut(s) 1122
NdeII GATC 3 cut(s) 1315, 1429, 1649
NlaIII CATG 9 cut(s) 98, 116, 243, 895, 959, 1040, 1126, 1403, 1454
NlaIV GGNNCC 3 cut(s) 398, 616, 631
NmuCI GTSAC 2 cut(s) 787, 1209
NsiI ATGCAT 2 cut(s) 298, 957
NspI RCATGY 1 cut(s) 243
PagI TCATGA 1 cut(s) 891
PaqCI CACCTGC 1 cut(s) 984
PcsI WCGNNNNNNNCGW 2 cut(s) 50, 1440
PctI GAATGC 1 cut(s) 1284
PdmI GAANNNNTTC 3 cut(s) 438, 651, 775
PfeI GAWTC 3 cut(s) 813, 1115, 1565
PflFI GACNNNGTC 1 cut(s) 136
PleI GAGTC 2 cut(s) 281, 889
PpsI GAGTC 2 cut(s) 281, 889
PsiI TTATAA 1 cut(s) 1322
PspFI CCCAGC 1 cut(s) 1601
PspN4I GGNNCC 3 cut(s) 398, 616, 631
PspPI GGNCC 1 cut(s) 1447
PstI CTGCAG 2 cut(s) 784, 1441
PstNI CAGNNNCTG 2 cut(s) 215, 1568
PsuI RGATCY 1 cut(s) 1649
PsyI GACNNNGTC 1 cut(s) 136
PvuII CAGCTG 3 cut(s) 560, 1508, 1601
RsaI GTAC 4 cut(s) 213, 223, 411, 1410
RsaNI GTAC 4 cut(s) 212, 222, 410, 1409
RseI CAYNNNNRTG 1 cut(s) 93
SacII CCGCGG 1 cut(s) 1596
SaqAI TTAA 3 cut(s) 281, 1130, 1175
Sau3AI GATC 3 cut(s) 1315, 1429, 1649
Sau96I GGNCC 1 cut(s) 1447
ScaI AGTACT 2 cut(s) 223, 1410
SchI GAGTC 2 cut(s) 281, 889
SduI GDGCHC 1 cut(s) 617
SfcI CTRYAG 5 cut(s) 576, 780, 981, 1002, 1437
Sfr303I CCGCGG 1 cut(s) 1596
SgrBI CCGCGG 1 cut(s) 1596
SinI GGWCC 1 cut(s) 1447
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 2 cut(s) 362, 1477
SmoI CTYRAG 2 cut(s) 362, 1477
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 8 cut(s) 461, 771, 930, 965, 1023, 1168, 1377, 1660
SsiI CCGC 6 cut(s) 15, 184, 190, 841, 1593, 1595
SspI AATATT 2 cut(s) 405, 1300
SspMI CTAG 4 cut(s) 6, 225, 621, 1203
StyI CCWWGG 1 cut(s) 1122
TaaI ACNGT 8 cut(s) 178, 211, 718, 736, 793, 1054, 1231, 1589
TaqI TCGA 4 cut(s) 23, 131, 432, 1519
TasI AATT 8 cut(s) 461, 771, 930, 965, 1023, 1168, 1377, 1660
TatI WGTACW 3 cut(s) 221, 409, 1408
TauI GCSGC 4 cut(s) 187, 193, 1595, 1598
TfiI GAWTC 3 cut(s) 813, 1115, 1565
Tru1I TTAA 3 cut(s) 281, 1130, 1175
Tru9I TTAA 3 cut(s) 281, 1130, 1175
TscAI CASTG 4 cut(s) 159, 948, 1057, 1594
TseFI GTSAC 2 cut(s) 787, 1209
Tsp45I GTSAC 2 cut(s) 787, 1209
TspDTI ATGAA 4 cut(s) 1016, 1095, 1325, 1401
TspRI CASTG 4 cut(s) 159, 948, 1057, 1594
Tth111I GACNNNGTC 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 1447
XapI RAATTY 4 cut(s) 461, 965, 1168, 1377
XceI RCATGY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XmiI GTMKAC 2 cut(s) 683, 987
XmnI GAANNNNTTC 3 cut(s) 438, 651, 775
XspI CTAG 4 cut(s) 6, 225, 621, 1203
ZrmI AGTACT 2 cut(s) 223, 1410
Zsp2I ATGCAT 2 cut(s) 298, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.