Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009866

Physical Location & Seq

Genomic Coordinates Forward (+)

25477541 .. 25481715

Gene Structure 4175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGCTGCGGAGCTTGTAAGTTCTGCAACAAGTGAGAAGCTTGCAGATGTGGACTGGGCCAAAAACATTGAGATCTGTGAATTAGCTGCTCGAGATGAAAGGCAAGCAAAAGATGTTATCAAGGCTATCAAAAAACGCTTGGGAAGCAAGAACCCAAATACTCAATTATATGCTGTCCAGTTGCTAGAGATGTTGATGAATAATATTGGAGAGAATATTCATAAGCAAGTTATAGATACAGGTGTACTCCCTACGCTTGTGAAGATAGTAAAGAAAAAATCGGATTTGCCTGTAAGAGAGAGGATTTTTCTTCTTCTTGATGCAACTCAAACCTCCCTTGGTGGCGCTTCAGGGAAATTCCCTCAGTATTATACAGCATACTATGAATTAGTGAACGCAGGAGTTAAATTTACTCAGAGGCCTAATGCTACACCAGTCGTGGTCACTGCTCAGGCTGTTCCGAGAAATACCCTTAATGAACAACTTGCATCTGCCAGAAATGAGGGGCCTGCTACTACTCAGCAGCGAGAATCTCAATCTGTCTCTCCTTCGAGTATTTTACAAAAGGCTAGTACTGCATTAGAAATTTTGAAGGAAGTGCTTGACGCAGTCGATTCTCAAAATCCTGAGGGGGCAAAAGATGAGTTTACTCTTGATCTTGTCGAGCAATGTTCGTTTCAGAAAGAGCGCGTAATGCACCTCGTCATGACATCGAGGGATGAAAAAGCAGTTTCTAAAGCAATCGAATTGAATGAGCAACTTCAGAGAATTCTCAATAGACACGAAGATTTGCTGTCTGGTAGAATCACTGTTCCTAGCAGGTCTACCACATCAAATGGATATCATTCCAATCTCGAACCTGTCCGTCCTATCTCAAATGGTGACCAGAAACGCGAGCTAAAGGCTTCTAATGCAAACACCGAATCAAGCAGCTTCATTTCTAACCGAGCCCATCTTAAGCTTGAGGAAGAAGATGAGGAAGAGGAGCCTGAGCAGTTATTCAGAAGATTGCGAAAAGGGAAAGCTAGAGCAAGGCCTGAGGATGAAGAAGAGCCATCACCTCCACAAGGATTGCCTGGATCAGCAATACATAACGAAAGACTTAACCGTCCACTTATCCGTCCTTTACCATCAGAGGAGGCATCACGCGGTGGTGATAGCCATTCGCAATCCCCACCTGTTGTGATTCCACCACCACCTGCGAAGCACGTTGAGAGGGAAAAATTCTTCAAGGAGAATAAAGGTGACGGTGCCTTGGGTTTACCAGGTCATATGCGAGGCCTTTCTTTGCATAGCCGTGATGGCAGCAGCTCACGCAGTGGAAGCGTAGACTTCAGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

447

Amino Acids

49.42

Weight (kDa)

6.27

Isoelectric Point (pI)

59.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	5 - 110	4.5e-21	VHS domain
GAT	PF03127	194 - 267	8.4e-11	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63640 AT5G63640
fragaria_vesca	FvH4_1g25460 FvH4_1g25460 FvH4_1g25460 FvH4_1g25460 FvH4_1g25460 FvH4_1g25460
malus_domestica	MD15G1138500.v1.1
prunus_persica	Prupe.4G281700_v2.0.a1 Prupe.4G281700_v2.0.a1
pyrus_communis	pycom15g12530
rosa_chinensis	RchiOBHm_Chr2g0123581
rosa_multiflora	Rmu_ssc0000091.1_g000012
rosa_roxburghii	Rroxscaffold_2G00120570
rosa_rugosa	Rorug02G0246300
rosa_samantha	Rh2AG305500 Rh2BG313400 Rh2CG291600 Rh2DG329300
rosa_wichuraiana	Rw2G024470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1207
AasI	GACNNNNNNGTC	1 cut(s)	1107
Acc36I	ACCTGC	2 cut(s)	810, 1207
AccB1I	GGYRCC	1 cut(s)	1250
AccI	GTMKAC	2 cut(s)	824, 1329
AccII	CGCG	3 cut(s)	690, 894, 1149
AciI	CCGC	2 cut(s)	8, 1149
AclWI	GGATC	1 cut(s)	1087
AcsI	RAATTY	5 cut(s)	356, 407, 585, 768, 1223
AcuI	CTGAAG	3 cut(s)	333, 746, 1318
AdeI	CACNNNGTG	2 cut(s)	1151, 1319
AfaI	GTAC	2 cut(s)	246, 574
AfiI	CCNNNNNNNGG	1 cut(s)	1067
AflII	CTTAAG	1 cut(s)	956
AgsI	TTSAA	3 cut(s)	592, 751, 1231
AjnI	CCWGG	2 cut(s)	1075, 1264
AluBI	AGCT	8 cut(s)	13, 40, 86, 898, 933, 961, 1025, 1311
AluI	AGCT	8 cut(s)	13, 40, 86, 898, 933, 961, 1025, 1311
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	1 cut(s)	1087
AlwNI	CAGNNNCTG	1 cut(s)	1341
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	5 cut(s)	57, 419, 506, 1034, 1279
ApeKI	GCWGC	6 cut(s)	5, 86, 523, 930, 1305, 1308
ApoI	RAATTY	5 cut(s)	356, 407, 585, 768, 1223
AspLEI	GCGC	2 cut(s)	347, 690
AspS9I	GGNCC	2 cut(s)	57, 506
AsuHPI	GGTGA	4 cut(s)	893, 1050, 1166, 1256
AvaI	CYCGRG	1 cut(s)	90
AxyI	CCTNAGG	2 cut(s)	627, 1038
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BanI	GGYRCC	1 cut(s)	1250
BanII	GRGCYC	1 cut(s)	952
BbvI	GCAGC	5 cut(s)	73, 535, 942, 1317, 1320
BccI	CCATC	4 cut(s)	960, 1063, 1138, 1295
BceAI	ACGGC	1 cut(s)	1281
BciT130I	CCWGG	2 cut(s)	1077, 1266
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	4 cut(s)	185, 570, 816, 1026
BfoI	RGCGCY	1 cut(s)	348
BfrI	CTTAAG	1 cut(s)	956
BfuAI	ACCTGC	2 cut(s)	810, 1207
BglI	GCCNNNNNGGC	1 cut(s)	1302
BglII	AGATCT	1 cut(s)	72
BisI	GCNGC	6 cut(s)	6, 87, 524, 931, 1306, 1309
BlsI	GCNGC	6 cut(s)	7, 88, 525, 932, 1307, 1310
BmcAI	AGTACT	1 cut(s)	574
Bme1390I	CCNGG	2 cut(s)	1077, 1266
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	57, 506
BmiI	GGNNCC	3 cut(s)	507, 987, 1252
BmrFI	CCNGG	2 cut(s)	1077, 1266
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	3 cut(s)	310, 497, 1151
BmuI	ACTGGG	1 cut(s)	64
Bpu10I	CCTNAGC	2 cut(s)	450, 990
BpuEI	CTTGAG	1 cut(s)	983
BsaJI	CCNNGG	2 cut(s)	337, 1254
Bsc4I	CCNNNNNNNGG	1 cut(s)	1067
Bse1I	ACTGG	3 cut(s)	59, 178, 434
Bse21I	CCTNAGG	2 cut(s)	627, 1038
Bse3DI	GCAATG	1 cut(s)	674
BseBI	CCWGG	2 cut(s)	1077, 1266
BseDI	CCNNGG	2 cut(s)	337, 1254
BseGI	GGATG	2 cut(s)	724, 1048
BseLI	CCNNNNNNNGG	1 cut(s)	1067
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	7 cut(s)	377, 428, 464, 533, 618, 981, 1029
BseNI	ACTGG	3 cut(s)	59, 178, 434
BseRI	GAGGAG	2 cut(s)	998, 1151
BseXI	GCAGC	5 cut(s)	73, 535, 942, 1317, 1320
Bsh1236I	CGCG	3 cut(s)	690, 894, 1149
BshFI	GGCC	5 cut(s)	59, 421, 508, 1036, 1281
BshNI	GGYRCC	1 cut(s)	1250
BsiHKCI	CYCGRG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	1067
BsmAI	GTCTC	1 cut(s)	547
BsnI	GGCC	5 cut(s)	59, 421, 508, 1036, 1281
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	952
Bsp143I	GATC	3 cut(s)	72, 655, 1079
BspACI	CCGC	2 cut(s)	8, 1149
BspANI	GGCC	5 cut(s)	59, 421, 508, 1036, 1281
BspCNI	CTCAG	7 cut(s)	376, 427, 463, 532, 619, 982, 1030
BspFNI	CGCG	3 cut(s)	690, 894, 1149
BspHI	TCATGA	1 cut(s)	705
BspLI	GGNNCC	3 cut(s)	507, 987, 1252
BspMI	ACCTGC	2 cut(s)	810, 1207
BspPI	GGATC	1 cut(s)	1087
BspQI	GCTCTTC	1 cut(s)	1044
BspT107I	GGYRCC	1 cut(s)	1250
BspTI	CTTAAG	1 cut(s)	956
BsrDI	GCAATG	1 cut(s)	674
BsrI	ACTGG	3 cut(s)	59, 178, 434
BssECI	CCNNGG	2 cut(s)	337, 1254
BssMI	GATC	3 cut(s)	72, 655, 1079
BssT1I	CCWWGG	2 cut(s)	337, 1254
Bst2UI	CCWGG	2 cut(s)	1077, 1266
Bst4CI	ACNGT	3 cut(s)	811, 1109, 1250
Bst6I	CTCTTC	2 cut(s)	975, 1044
BstAFI	CTTAAG	1 cut(s)	956
BstC8I	GCNNGC	4 cut(s)	42, 105, 510, 896
BstDEI	CTNAG	7 cut(s)	363, 414, 450, 519, 627, 990, 1038
BstEII	GGTNACC	1 cut(s)	881
BstENI	CCTNNNNNAGG	1 cut(s)	1065
BstF5I	GGATG	2 cut(s)	724, 1048
BstFNI	CGCG	3 cut(s)	690, 894, 1149
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	2 cut(s)	347, 690
BstKTI	GATC	3 cut(s)	75, 658, 1082
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	3 cut(s)	72, 655, 1079
BstMWI	GCNNNNNNNGC	7 cut(s)	144, 575, 694, 911, 1302, 1314, 1323
BstNI	CCWGG	2 cut(s)	1077, 1266
BstPI	GGTNACC	1 cut(s)	881
BstSCI	CCNGG	2 cut(s)	1075, 1264
BstUI	CGCG	3 cut(s)	690, 894, 1149
BstV1I	GCAGC	5 cut(s)	73, 535, 942, 1317, 1320
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
Bsu36I	CCTNAGG	2 cut(s)	627, 1038
BsuRI	GGCC	5 cut(s)	59, 421, 508, 1036, 1281
BtsCI	GGATG	2 cut(s)	724, 1048
BtsI	GCAGTG	2 cut(s)	444, 1324
BtsIMutI	CAGTG	4 cut(s)	444, 807, 1324, 1342
BveI	ACCTGC	2 cut(s)	810, 1207
Cac8I	GCNNGC	4 cut(s)	42, 105, 510, 896
CaiI	CAGNNNCTG	1 cut(s)	1341
CciI	TCATGA	1 cut(s)	705
CfoI	GCGC	2 cut(s)	347, 690
Cfr13I	GGNCC	2 cut(s)	57, 506
CseI	GACGC	1 cut(s)	614
CsiI	ACCWGGT	1 cut(s)	1264
Csp6I	GTAC	2 cut(s)	245, 573
CspCI	CAANNNNNGTGG	2 cut(s)	1053, 1088
CviAII	CATG	1 cut(s)	706
CviQI	GTAC	2 cut(s)	245, 573
DdeI	CTNAG	7 cut(s)	363, 414, 450, 519, 627, 990, 1038
DpnI	GATC	3 cut(s)	74, 657, 1081
DpnII	GATC	3 cut(s)	72, 655, 1079
DraIII	CACNNNGTG	2 cut(s)	1151, 1319
DrdI	GACNNNNNNGTC	1 cut(s)	1107
DseDI	GACNNNNNNGTC	1 cut(s)	1107
Eam1104I	CTCTTC	2 cut(s)	975, 1044
EarI	CTCTTC	2 cut(s)	975, 1044
Eco130I	CCWWGG	2 cut(s)	337, 1254
Eco147I	AGGCCT	3 cut(s)	421, 1036, 1281
Eco24I	GRGCYC	1 cut(s)	952
Eco32I	GATATC	1 cut(s)	842
Eco57I	CTGAAG	3 cut(s)	333, 746, 1318
Eco81I	CCTNAGG	2 cut(s)	627, 1038
Eco88I	CYCGRG	1 cut(s)	90
Eco91I	GGTNACC	1 cut(s)	881
EcoNI	CCTNNNNNAGG	1 cut(s)	1065
EcoO109I	RGGNCCY	1 cut(s)	506
EcoO65I	GGTNACC	1 cut(s)	881
EcoRI	GAATTC	1 cut(s)	768
EcoRII	CCWGG	2 cut(s)	1075, 1264
EcoRV	GATATC	1 cut(s)	842
EcoT14I	CCWWGG	2 cut(s)	337, 1254
EcoT38I	GRGCYC	1 cut(s)	952
ErhI	CCWWGG	2 cut(s)	337, 1254
FaeI	CATG	1 cut(s)	709
FatI	CATG	1 cut(s)	705
FauNDI	CATATG	1 cut(s)	1272
FblI	GTMKAC	2 cut(s)	824, 1329
Fnu4HI	GCNGC	6 cut(s)	6, 87, 524, 931, 1306, 1309
FokI	GGATG	2 cut(s)	731, 1055
FriOI	GRGCYC	1 cut(s)	952
Fsp4HI	GCNGC	6 cut(s)	6, 87, 524, 931, 1306, 1309
FspBI	CTAG	4 cut(s)	185, 570, 816, 1026
GlaI	GCGC	2 cut(s)	346, 689
GluI	GCNGC	6 cut(s)	6, 87, 524, 931, 1306, 1309
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	5 cut(s)	59, 421, 508, 1036, 1281
HgaI	GACGC	1 cut(s)	614
HhaI	GCGC	2 cut(s)	347, 690
Hin1II	CATG	1 cut(s)	709
Hin6I	GCGC	2 cut(s)	345, 688
HinP1I	GCGC	2 cut(s)	345, 688
HindIII	AAGCTT	2 cut(s)	38, 959
HinfI	GANTC	5 cut(s)	530, 614, 804, 923, 1186
HphI	GGTGA	4 cut(s)	893, 1050, 1166, 1256
Hpy166II	GTNNAC	8 cut(s)	52, 245, 394, 648, 825, 1112, 1262, 1330
Hpy188I	TCNGA	7 cut(s)	283, 417, 462, 681, 765, 1004, 1135
Hpy188III	TCNNGA	6 cut(s)	92, 317, 626, 653, 706, 854
Hpy8I	GTNNAC	8 cut(s)	52, 245, 394, 648, 825, 1112, 1262, 1330
HpyAV	CCTTC	2 cut(s)	558, 586
HpyCH4III	ACNGT	3 cut(s)	811, 1109, 1250
HpyCH4IV	ACGT	1 cut(s)	1209
HpyCH4V	TGCA	8 cut(s)	26, 44, 323, 488, 578, 697, 914, 1291
HpyF10VI	GCNNNNNNNGC	7 cut(s)	144, 575, 694, 911, 1302, 1314, 1323
HpyF3I	CTNAG	7 cut(s)	363, 414, 450, 519, 627, 990, 1038
HpySE526I	ACGT	1 cut(s)	1209
Hsp92II	CATG	1 cut(s)	709
HspAI	GCGC	2 cut(s)	345, 688
Kzo9I	GATC	3 cut(s)	72, 655, 1079
LguI	GCTCTTC	1 cut(s)	1044
LmnI	GCTCC	2 cut(s)	10, 985
Lsp1109I	GCAGC	5 cut(s)	73, 535, 942, 1317, 1320
LweI	GCATC	3 cut(s)	310, 497, 1151
MabI	ACCWGGT	1 cut(s)	1264
MaeI	CTAG	4 cut(s)	185, 570, 816, 1026
MaeII	ACGT	1 cut(s)	1209
MaeIII	GTNAC	4 cut(s)	442, 881, 1244, 1337
MalI	GATC	3 cut(s)	74, 657, 1081
MboI	GATC	3 cut(s)	72, 655, 1079
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	952
MluCI	AATT	9 cut(s)	80, 164, 356, 386, 407, 585, 746, 768, 1223
MseI	TTAA	4 cut(s)	405, 474, 957, 1104
MslI	CAYNNNNRTG	1 cut(s)	1296
MspCI	CTTAAG	1 cut(s)	956
MspR9I	CCNGG	2 cut(s)	1077, 1266
MvaI	CCWGG	2 cut(s)	1077, 1266
MvnI	CGCG	3 cut(s)	690, 894, 1149
MwoI	GCNNNNNNNGC	7 cut(s)	144, 575, 694, 911, 1302, 1314, 1323
NdeI	CATATG	1 cut(s)	1272
NdeII	GATC	3 cut(s)	72, 655, 1079
NlaIII	CATG	1 cut(s)	709
NlaIV	GGNNCC	3 cut(s)	507, 987, 1252
NmuCI	GTSAC	4 cut(s)	442, 881, 1244, 1337
PaeR7I	CTCGAG	1 cut(s)	90
PagI	TCATGA	1 cut(s)	705
PaqCI	CACCTGC	1 cut(s)	1207
PceI	AGGCCT	3 cut(s)	421, 1036, 1281
PciSI	GCTCTTC	1 cut(s)	1044
PfeI	GAWTC	5 cut(s)	530, 614, 804, 923, 1186
PflFI	GACNNNGTC	1 cut(s)	608
PkrI	GCNGC	6 cut(s)	7, 88, 525, 932, 1307, 1310
Psp6I	CCWGG	2 cut(s)	1075, 1264
PspEI	GGTNACC	1 cut(s)	881
PspGI	CCWGG	2 cut(s)	1075, 1264
PspN4I	GGNNCC	3 cut(s)	507, 987, 1252
PspPI	GGNCC	2 cut(s)	57, 506
PstNI	CAGNNNCTG	1 cut(s)	1341
PsuI	RGATCY	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	608
RsaI	GTAC	2 cut(s)	246, 574
RsaNI	GTAC	2 cut(s)	245, 573
RseI	CAYNNNNRTG	1 cut(s)	1296
SapI	GCTCTTC	1 cut(s)	1044
SaqAI	TTAA	4 cut(s)	405, 474, 957, 1104
SatI	GCNGC	6 cut(s)	6, 87, 524, 931, 1306, 1309
Sau3AI	GATC	3 cut(s)	72, 655, 1079
Sau96I	GGNCC	2 cut(s)	57, 506
ScaI	AGTACT	1 cut(s)	574
ScrFI	CCNGG	2 cut(s)	1077, 1266
SduI	GDGCHC	1 cut(s)	952
SexAI	ACCWGGT	1 cut(s)	1264
SfaNI	GCATC	3 cut(s)	310, 497, 1151
Sfr274I	CTCGAG	1 cut(s)	90
SlaI	CTCGAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	1296
SmlI	CTYRAG	3 cut(s)	90, 956, 962
SmoI	CTYRAG	3 cut(s)	90, 956, 962
Sse9I	AATT	9 cut(s)	80, 164, 356, 386, 407, 585, 746, 768, 1223
SseBI	AGGCCT	3 cut(s)	421, 1036, 1281
SsiI	CCGC	2 cut(s)	8, 1149
SspI	AATATT	2 cut(s)	205, 217
SspMI	CTAG	4 cut(s)	185, 570, 816, 1026
StuI	AGGCCT	3 cut(s)	421, 1036, 1281
StyD4I	CCNGG	2 cut(s)	1075, 1264
StyI	CCWWGG	2 cut(s)	337, 1254
TaaI	ACNGT	3 cut(s)	811, 1109, 1250
TaiI	ACGT	1 cut(s)	1212
TaqI	TCGA	7 cut(s)	91, 551, 612, 663, 713, 744, 855
TasI	AATT	9 cut(s)	80, 164, 356, 386, 407, 585, 746, 768, 1223
TatI	WGTACW	2 cut(s)	244, 572
TfiI	GAWTC	5 cut(s)	530, 614, 804, 923, 1186
Tru1I	TTAA	4 cut(s)	405, 474, 957, 1104
Tru9I	TTAA	4 cut(s)	405, 474, 957, 1104
TscAI	CASTG	4 cut(s)	451, 814, 1324, 1342
TseFI	GTSAC	4 cut(s)	442, 881, 1244, 1337
TseI	GCWGC	6 cut(s)	5, 86, 523, 930, 1305, 1308
Tsp45I	GTSAC	4 cut(s)	442, 881, 1244, 1337
TspDTI	ATGAA	8 cut(s)	111, 209, 212, 399, 492, 735, 925, 1059
TspGWI	ACGGA	2 cut(s)	854, 1109
TspRI	CASTG	4 cut(s)	451, 814, 1324, 1342
Tth111I	GACNNNGTC	1 cut(s)	608
Vha464I	CTTAAG	1 cut(s)	956
XagI	CCTNNNNNAGG	1 cut(s)	1065
XapI	RAATTY	5 cut(s)	356, 407, 585, 768, 1223
XhoI	CTCGAG	1 cut(s)	90
XmiI	GTMKAC	2 cut(s)	824, 1329
XspI	CTAG	4 cut(s)	185, 570, 816, 1026
ZrmI	AGTACT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.