Rh2BG313400
MYB Family

Target of Myb protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009866
Physical Location & Seq
Reverse (-)
36874597 .. 36884289
9693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG313400.1

Sequence Viewer

Length: 1284 bp
ATGTATATGAGCTTGTATATGATCGGTACGTCTCTTTTTAAGTTCATATTCTTACTTTTTGATCAATTGTTGAAGTTCAGAGTTAACCAAAAGATGGCTGCTGAGCTTGTCAATTCTGCAACGAGTGAGAAACTGAGTGAAATGGATTGGACCAAGAATATTCAAATCTGTGAATTAGTTGCTCATGATAATAGACAAGCTAGAGATGTCATTAAAGCTATCAAGAAACGTCTGGGGAGTAAAAATGCAAATTCTCAACTTTATGCAGTTATGTTGCTGGAGATGTTGATGAACAACATTGGAGAACATATTCATAAGCAAGTGATCGAAGTTGGGATTCTTCCTAGTCTAGTGAAGATAGTCAAGAAAAAGTCAGACTTACCAGTGAGGGAGCGCATCTTTCTACTGCTAGATGCGACACAGACATCCCTTGGCGGTGCTTCTGGAAAGTTCCCTCAGTATTATACTGCTTATTACGACTTGGTGAGTGCTGGAATACAGTTCCCTCAAAGGCCTCCTCCGGTCCCTTCAAATAGCCAAGTACCAGAACCAGCTAAGAATAATTTACCTAACAGGGATAACGGGATTGCTCCACGAGTGGAGCCACATGTTGTTCCTGAATCTAGTATTATTCAGAAGGCTGGTAATGCACTGGAGGTTTTGAAAGAGGTCCTTGATGCAGTTGATAGTCAGCATCCAGAGGGGGCAAAAGACGAATTCACACTTGATCTTGTGGAGCAATGTTCTTTCCAAAAGCAAAAAGTTATGCATCTTGTAATGACTTCTCGGGATGAGAAGGTAGTTTCTCAAGCTATTGAATTAAATGAGAAGCTCCAGAAGGTTCTTACAAGACATGATGCCCTGCTTTCTTGCAATTCTACATTGACTGTGAACCGTCTTATTGAAGAACAGGGAGAGGAGGAAGAAGAAGAGCCAGAACAGCTTGTTCGAAGGCTGCGGAAAGGAAAAGCTTGTGTGAGGCCTGAGGATGAAGAGCAGTCAGCTGAGCATTCCCACTTGGGTTTGCTTGGATCATCCAGGCCTGGGGAAAGGCTCAACCGTCCACTTATACGACCACTTTGCTTGGAGCCATCGCCTGAATCAAATGGACATCTTCCACCTGTTGCTATTCCACCCCCACCTGCAAAGCACATTGAGAGGGAAAGATACTTCCAGGAAACCAAAGTGGATAGCTCTACTTTGGCTGGCCACATCAGAGGTCTCTCATTACATAGTCGCAATGCAAGTAGCTCTCTCAGTGGAAGCATGGATTTTAGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAT VHS

Protein Analysis

427

Amino Acids

47.89

Weight (kDa)

6.38

Isoelectric Point (pI)

62.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VHS PF00790 34 - 141 1.5e-21 VHS domain
GAT PF03127 218 - 289 3.9e-11 GAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1150
Acc36I ACCTGC 1 cut(s) 1150
AccB7I CCANNNNNTGG 1 cut(s) 94
AciI CCGC 2 cut(s) 435, 958
AclWI GGATC 1 cut(s) 1039
AcoI YGGCCR 1 cut(s) 1207
AcsI RAATTY 2 cut(s) 250, 716
AfaI GTAC 2 cut(s) 28, 543
AfiI CCNNNNNNNGG 2 cut(s) 94, 1044
AflIII ACRYGT 1 cut(s) 607
AgsI TTSAA 6 cut(s) 73, 164, 531, 664, 818, 905
AjnI CCWGG 3 cut(s) 1037, 1042, 1173
Alw26I GTCTC 2 cut(s) 36, 1226
AlwI GGATC 1 cut(s) 1039
Ama87I CYCGRG 1 cut(s) 786
AoxI GGCC 4 cut(s) 512, 980, 1040, 1207
ApeKI GCWGC 2 cut(s) 98, 955
ApoI RAATTY 2 cut(s) 250, 716
Asp700I GAANNNNTTC 1 cut(s) 309
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 150, 523, 670
AsuHPI GGTGA 1 cut(s) 496
AsuII TTCGAA 1 cut(s) 949
AvaI CYCGRG 1 cut(s) 786
AvaII GGWCC 3 cut(s) 150, 523, 670
AxyI CCTNAGG 1 cut(s) 984
BalI TGGCCA 1 cut(s) 1209
BauI CACGAG 1 cut(s) 594
BbvI GCAGC 2 cut(s) 85, 942
BccI CCATC 2 cut(s) 88, 1099
BcgI CGANNNNNNTGC 2 cut(s) 1062, 1096
BciT130I CCWGG 3 cut(s) 1039, 1044, 1175
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 36, 1226
BfaI CTAG 5 cut(s) 201, 345, 350, 410, 624
BfuAI ACCTGC 1 cut(s) 1150
BisI GCNGC 2 cut(s) 99, 956
BlpI GCTNAGC 2 cut(s) 102, 1005
BlsI GCNGC 2 cut(s) 100, 957
Bme1390I CCNGG 3 cut(s) 1039, 1044, 1175
Bme18I GGWCC 3 cut(s) 150, 523, 670
BmeT110I CYCGRG 1 cut(s) 786
BmgT120I GGNCC 3 cut(s) 150, 523, 670
BmiI GGNNCC 3 cut(s) 525, 603, 1089
BmrFI CCNGG 3 cut(s) 1039, 1044, 1175
BmsI GCATC 6 cut(s) 403, 405, 667, 703, 778, 847
BpmI CTGGAG 3 cut(s) 299, 674, 818
Bpu1102I GCTNAGC 2 cut(s) 102, 1005
Bpu14I TTCGAA 1 cut(s) 949
BpuEI CTTGAG 1 cut(s) 792
BsaI GGTCTC 1 cut(s) 1226
BsaJI CCNNGG 2 cut(s) 430, 1043
BsaWI WCCGGW 1 cut(s) 520
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 1044
Bse1I ACTGG 2 cut(s) 383, 657
Bse21I CCTNAGG 1 cut(s) 984
Bse3DI GCAATG 2 cut(s) 746, 1246
BseBI CCWGG 3 cut(s) 1039, 1044, 1175
BseDI CCNNGG 2 cut(s) 430, 1043
BseGI GGATG 5 cut(s) 425, 694, 796, 994, 1034
BseLI CCNNNNNNNGG 2 cut(s) 94, 1044
BseMI GCAATG 2 cut(s) 746, 1246
BseMII CTCAG 6 cut(s) 93, 125, 470, 975, 996, 1270
BseNI ACTGG 2 cut(s) 383, 657
BseRI GAGGAG 2 cut(s) 507, 932
BseXI GCAGC 2 cut(s) 85, 942
BshFI GGCC 4 cut(s) 514, 982, 1042, 1209
BsiHKCI CYCGRG 1 cut(s) 786
BsiSI CCGG 1 cut(s) 521
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 2 cut(s) 94, 1044
BsmAI GTCTC 2 cut(s) 36, 1226
BsmBI CGTCTC 1 cut(s) 36
BsmFI GGGAC 1 cut(s) 509
BsmI GAATGC 1 cut(s) 1009
BsnI GGCC 4 cut(s) 514, 982, 1042, 1209
Bso31I GGTCTC 1 cut(s) 1226
BsoBI CYCGRG 1 cut(s) 786
Bsp119I TTCGAA 1 cut(s) 949
Bsp143I GATC 5 cut(s) 21, 61, 324, 727, 1031
Bsp1720I GCTNAGC 2 cut(s) 102, 1005
BspACI CCGC 2 cut(s) 435, 958
BspANI GGCC 4 cut(s) 514, 982, 1042, 1209
BspCNI CTCAG 6 cut(s) 94, 126, 469, 976, 997, 1269
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 525, 603, 1089
BspMI ACCTGC 1 cut(s) 1150
BspPI GGATC 1 cut(s) 1039
BspQI GCTCTTC 2 cut(s) 924, 987
BspT104I TTCGAA 1 cut(s) 949
BspTNI GGTCTC 1 cut(s) 1226
BsrDI GCAATG 2 cut(s) 746, 1246
BsrI ACTGG 2 cut(s) 383, 657
BssECI CCNNGG 2 cut(s) 430, 1043
BssMI GATC 5 cut(s) 21, 61, 324, 727, 1031
BssSI CACGAG 1 cut(s) 594
BssT1I CCWWGG 1 cut(s) 430
Bst2BI CACGAG 1 cut(s) 594
Bst2UI CCWGG 3 cut(s) 1039, 1044, 1175
Bst4CI ACNGT 4 cut(s) 501, 889, 896, 1061
Bst6I CTCTTC 2 cut(s) 924, 987
BstBI TTCGAA 1 cut(s) 949
BstC8I GCNNGC 1 cut(s) 1207
BstDEI CTNAG 7 cut(s) 102, 134, 456, 555, 984, 1005, 1256
BstF5I GGATG 5 cut(s) 425, 694, 796, 994, 1034
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 5 cut(s) 24, 64, 327, 730, 1034
BstMAI GTCTC 2 cut(s) 36, 1226
BstMBI GATC 5 cut(s) 21, 61, 324, 727, 1031
BstMWI GCNNNNNNNGC 2 cut(s) 647, 940
BstNI CCWGG 3 cut(s) 1039, 1044, 1175
BstNSI RCATGY 1 cut(s) 611
BstSCI CCNGG 3 cut(s) 1037, 1042, 1173
BstV1I GCAGC 2 cut(s) 85, 942
Bsu36I CCTNAGG 1 cut(s) 984
BsuRI GGCC 4 cut(s) 514, 982, 1042, 1209
BtgZI GCGATG 1 cut(s) 1077
BtsCI GGATG 5 cut(s) 425, 694, 796, 994, 1034
BtsIMutI CAGTG 3 cut(s) 390, 650, 1264
BveI ACCTGC 1 cut(s) 1150
Cac8I GCNNGC 1 cut(s) 1207
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 3 cut(s) 150, 523, 670
Csp6I GTAC 2 cut(s) 27, 542
CspCI CAANNNNNGTGG 2 cut(s) 1065, 1100
CviAII CATG 4 cut(s) 185, 608, 854, 1267
CviQI GTAC 2 cut(s) 27, 542
DdeI CTNAG 7 cut(s) 102, 134, 456, 555, 984, 1005, 1256
DpnI GATC 5 cut(s) 23, 63, 326, 729, 1033
DpnII GATC 5 cut(s) 21, 61, 324, 727, 1031
EaeI YGGCCR 1 cut(s) 1207
Eam1104I CTCTTC 2 cut(s) 924, 987
EarI CTCTTC 2 cut(s) 924, 987
Eco130I CCWWGG 1 cut(s) 430
Eco147I AGGCCT 3 cut(s) 514, 982, 1042
Eco31I GGTCTC 1 cut(s) 1226
Eco47I GGWCC 3 cut(s) 150, 523, 670
Eco81I CCTNAGG 1 cut(s) 984
Eco88I CYCGRG 1 cut(s) 786
EcoO109I RGGNCCY 1 cut(s) 670
EcoRI GAATTC 1 cut(s) 716
EcoRII CCWGG 3 cut(s) 1037, 1042, 1173
EcoT14I CCWWGG 1 cut(s) 430
EcoT22I ATGCAT 1 cut(s) 771
ErhI CCWWGG 1 cut(s) 430
Esp3I CGTCTC 1 cut(s) 36
FaeI CATG 4 cut(s) 188, 611, 857, 1270
FalI AAGNNNNNCTT 4 cut(s) 362, 394, 657, 689
FaqI GGGAC 1 cut(s) 509
FatI CATG 4 cut(s) 184, 607, 853, 1266
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 99, 956
FokI GGATG 5 cut(s) 412, 681, 803, 1001, 1021
Fsp4HI GCNGC 2 cut(s) 99, 956
FspBI CTAG 5 cut(s) 201, 345, 350, 410, 624
GlaI GCGC 1 cut(s) 395
GluI GCNGC 2 cut(s) 99, 956
GsuI CTGGAG 3 cut(s) 299, 674, 818
HaeIII GGCC 4 cut(s) 514, 982, 1042, 1209
HapII CCGG 1 cut(s) 521
HhaI GCGC 1 cut(s) 396
Hin1II CATG 4 cut(s) 188, 611, 857, 1270
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 969
HinfI GANTC 3 cut(s) 337, 620, 1100
HpaI GTTAAC 1 cut(s) 85
HpaII CCGG 1 cut(s) 521
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 3 cut(s) 85, 892, 1064
Hpy188I TCNGA 4 cut(s) 80, 376, 636, 1217
Hpy188III TCNNGA 8 cut(s) 185, 223, 364, 444, 617, 698, 788, 835
Hpy8I GTNNAC 3 cut(s) 85, 892, 1064
HpyAV CCTTC 5 cut(s) 537, 631, 790, 832, 945
HpyCH4III ACNGT 4 cut(s) 501, 889, 896, 1061
HpyCH4IV ACGT 2 cut(s) 29, 229
HpyCH4V TGCA 9 cut(s) 119, 248, 266, 650, 680, 769, 873, 1145, 1244
HpyF10VI GCNNNNNNNGC 2 cut(s) 647, 940
HpyF3I CTNAG 7 cut(s) 102, 134, 456, 555, 984, 1005, 1256
HpySE526I ACGT 2 cut(s) 29, 229
Hsp92II CATG 4 cut(s) 188, 611, 857, 1270
HspAI GCGC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 61
KspAI GTTAAC 1 cut(s) 85
Kzo9I GATC 5 cut(s) 21, 61, 324, 727, 1031
LguI GCTCTTC 2 cut(s) 924, 987
LmnI GCTCC 6 cut(s) 391, 595, 601, 736, 837, 1087
Lsp1109I GCAGC 2 cut(s) 85, 942
LweI GCATC 6 cut(s) 403, 405, 667, 703, 778, 847
MaeI CTAG 5 cut(s) 201, 345, 350, 410, 624
MaeII ACGT 2 cut(s) 29, 229
MaeIII GTNAC 1 cut(s) 1277
MalI GATC 5 cut(s) 23, 63, 326, 729, 1033
MboI GATC 5 cut(s) 21, 61, 324, 727, 1031
MboII GAAGA 8 cut(s) 332, 367, 917, 935, 938, 941, 1004, 1106
MfeI CAATTG 1 cut(s) 65
MlsI TGGCCA 1 cut(s) 1209
MluCI AATT 8 cut(s) 65, 112, 173, 250, 562, 716, 818, 874
MluNI TGGCCA 1 cut(s) 1209
Mox20I TGGCCA 1 cut(s) 1209
Mph1103I ATGCAT 1 cut(s) 771
MroXI GAANNNNTTC 1 cut(s) 309
MscI TGGCCA 1 cut(s) 1209
MseI TTAA 4 cut(s) 39, 84, 213, 821
Msp20I TGGCCA 1 cut(s) 1209
MspA1I CMGCKG 1 cut(s) 1004
MspI CCGG 1 cut(s) 521
MspR9I CCNGG 3 cut(s) 1039, 1044, 1175
MunI CAATTG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 1009
MvaI CCWGG 3 cut(s) 1039, 1044, 1175
MwoI GCNNNNNNNGC 2 cut(s) 647, 940
NdeII GATC 5 cut(s) 21, 61, 324, 727, 1031
NlaIII CATG 4 cut(s) 188, 611, 857, 1270
NlaIV GGNNCC 3 cut(s) 525, 603, 1089
NmuCI GTSAC 1 cut(s) 1277
NsiI ATGCAT 1 cut(s) 771
NspI RCATGY 1 cut(s) 611
NspV TTCGAA 1 cut(s) 949
PagI TCATGA 1 cut(s) 184
PaqCI CACCTGC 1 cut(s) 1150
PceI AGGCCT 3 cut(s) 514, 982, 1042
PciI ACATGT 1 cut(s) 607
PciSI GCTCTTC 2 cut(s) 924, 987
PctI GAATGC 1 cut(s) 1009
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 3 cut(s) 337, 620, 1100
PflMI CCANNNNNTGG 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 1173
PkrI GCNGC 2 cut(s) 100, 957
PpuMI RGGWCCY 1 cut(s) 670
PscI ACATGT 1 cut(s) 607
Psp5II RGGWCCY 1 cut(s) 670
Psp6I CCWGG 3 cut(s) 1037, 1042, 1173
PspGI CCWGG 3 cut(s) 1037, 1042, 1173
PspN4I GGNNCC 3 cut(s) 525, 603, 1089
PspPI GGNCC 3 cut(s) 150, 523, 670
PspPPI RGGWCCY 1 cut(s) 670
PvuII CAGCTG 1 cut(s) 1004
RsaI GTAC 2 cut(s) 28, 543
RsaNI GTAC 2 cut(s) 27, 542
SapI GCTCTTC 2 cut(s) 924, 987
SaqAI TTAA 4 cut(s) 39, 84, 213, 821
SatI GCNGC 2 cut(s) 99, 956
Sau3AI GATC 5 cut(s) 21, 61, 324, 727, 1031
Sau96I GGNCC 3 cut(s) 150, 523, 670
ScrFI CCNGG 3 cut(s) 1039, 1044, 1175
SfaNI GCATC 6 cut(s) 403, 405, 667, 703, 778, 847
SfuI TTCGAA 1 cut(s) 949
SinI GGWCC 3 cut(s) 150, 523, 670
SmlI CTYRAG 1 cut(s) 807
SmoI CTYRAG 1 cut(s) 807
Sse9I AATT 8 cut(s) 65, 112, 173, 250, 562, 716, 818, 874
SseBI AGGCCT 3 cut(s) 514, 982, 1042
SsiI CCGC 2 cut(s) 435, 958
SspI AATATT 1 cut(s) 160
SspMI CTAG 5 cut(s) 201, 345, 350, 410, 624
StuI AGGCCT 3 cut(s) 514, 982, 1042
StyD4I CCNGG 3 cut(s) 1037, 1042, 1173
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 4 cut(s) 501, 889, 896, 1061
TaiI ACGT 2 cut(s) 32, 232
TaqI TCGA 2 cut(s) 327, 949
TasI AATT 8 cut(s) 65, 112, 173, 250, 562, 716, 818, 874
TfiI GAWTC 3 cut(s) 337, 620, 1100
Tru1I TTAA 4 cut(s) 39, 84, 213, 821
Tru9I TTAA 4 cut(s) 39, 84, 213, 821
TscAI CASTG 3 cut(s) 390, 657, 1264
TseFI GTSAC 1 cut(s) 1277
TseI GCWGC 2 cut(s) 98, 955
Tsp45I GTSAC 1 cut(s) 1277
TspDTI ATGAA 4 cut(s) 34, 302, 305, 1005
TspRI CASTG 3 cut(s) 390, 657, 1264
Van91I CCANNNNNTGG 1 cut(s) 94
VpaK11BI GGWCC 3 cut(s) 150, 523, 670
XapI RAATTY 2 cut(s) 250, 716
XceI RCATGY 1 cut(s) 611
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 5 cut(s) 201, 345, 350, 410, 624
Zsp2I ATGCAT 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.