Rorug02G0246300
MYB Family

Target of Myb protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009866
Physical Location & Seq
Reverse (-)
25621481 .. 25622332
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0246300.1

Sequence Viewer

Length: 852 bp
ATGGAGGAGGCCTTGGTGGATCTGACGAAGCGTATGGCGATTGAGGATGCTGAAGATCTGAATGTAATCCAAATCTCGGATCTGGATGACATTGTGGTTCGCAAGTTCTGGTTGGTTGGTAGACTTTTAACTAATAAGGAGTTTTGTTTTGAAGCCTTAAGAAGTACTATGAAAAGACTATGGCCTCTGAGGGAGGAGGTAACCATCTTTCAATGGGAAGATTCGGATCGTATACTCTTCTCCTTTGGTTCAGATGCCGATCGGAGGAAAGTGTTAAGAGGGAGCCCATGGACCTTTGATCATGCTCTGCTTTTGCTTTCCGCAACTGATGGAACAGTTGATCCAAAGACTATTCCACTCAGTTCTCAGGCTTTTTGGATCCGGGTTCGAGGTATTAAACCTGCCTTCATGAACCCCAGATTGGCAGAGCGCATTGGACGACAACTGGGAACCTTTTATCCTGTGGGGGGAGGGGTTGGTGAAGATTGTAGTGGGAGATTCCTCCGTCTCAGGGTGGGTTTGGAGGTTGATAAACCCTTGCAGAGATGGGTTAATATTTCATTAGCAGTCGGGCTCACACCGGAGAGATTTCCTTTGGAGTATGAGCATCTGCCTTACTTGTGCTTCTTTTGCGGGAGATTAGACCATGTGAGTTCAGGATGTCTATTGCACAAGGAGGGAGTCATTCCAGAGGAAAGGTTTGGAAGATGGAAAACGCTTTCCAAGGATGTCTACTCTATTGATCCAAATGGTCAGATGCAAGGAAAAAGATTTGGATTGATCCCTAAACCTAAAGGCTGGACAATGAATGTAGGCGAGACTGACATTACGGGATCAATTCGAACACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAT VHS

Protein Analysis

283

Amino Acids

32.39

Weight (kDa)

8.25

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 36 - 108 4.5e-09 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 409
AccI GTMKAC 3 cut(s) 121, 232, 732
AciI CCGC 2 cut(s) 321, 633
AclWI GGATC 9 cut(s) 27, 87, 234, 335, 373, 386, 737, 775, 841
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 5 cut(s) 76, 264, 421, 467, 511
AflII CTTAAG 1 cut(s) 157
AgsI TTSAA 2 cut(s) 152, 212
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AloI GAACNNNNNNTCC 4 cut(s) 325, 357, 442, 474
Alw26I GTCTC 2 cut(s) 512, 812
AlwI GGATC 9 cut(s) 27, 87, 234, 335, 373, 386, 737, 775, 841
AoxI GGCC 2 cut(s) 9, 182
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 383
AsuHPI GGTGA 1 cut(s) 491
AsuII TTCGAA 1 cut(s) 841
AvaII GGWCC 1 cut(s) 291
BamHI GGATCC 1 cut(s) 378
BanII GRGCYC 2 cut(s) 287, 576
BccI CCATC 4 cut(s) 212, 323, 540, 702
BclI TGATCA 1 cut(s) 298
BcnI CCSGG 1 cut(s) 383
BcoDI GTCTC 2 cut(s) 512, 812
BfrI CTTAAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 409
BglII AGATCT 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 383
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 3 cut(s) 284, 380, 451
BmrFI CCNGG 1 cut(s) 383
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 4 cut(s) 37, 244, 616, 747
BmuI ACTGGG 1 cut(s) 455
Bpu14I TTCGAA 1 cut(s) 841
BpuMI CCSGG 1 cut(s) 383
BsaBI GATNNNNATC 2 cut(s) 225, 258
BsaJI CCNNGG 3 cut(s) 12, 287, 723
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 5 cut(s) 76, 264, 421, 467, 511
Bse1I ACTGG 1 cut(s) 450
Bse8I GATNNNNATC 2 cut(s) 225, 258
BseDI CCNNGG 3 cut(s) 12, 287, 723
BseGI GGATG 4 cut(s) 52, 91, 665, 733
BseJI GATNNNNATC 2 cut(s) 225, 258
BseLI CCNNNNNNNGG 5 cut(s) 76, 264, 421, 467, 511
BseMII CTCAG 4 cut(s) 179, 373, 380, 523
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 2 cut(s) 20, 209
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 2 cut(s) 11, 184
BsiEI CGRYCG 1 cut(s) 262
BsiSI CCGG 2 cut(s) 382, 581
BslI CCNNNNNNNGG 5 cut(s) 76, 264, 421, 467, 511
BsmAI GTCTC 2 cut(s) 512, 812
BsmBI CGTCTC 1 cut(s) 512
BsnI GGCC 2 cut(s) 11, 184
Bsp119I TTCGAA 1 cut(s) 841
Bsp1286I GDGCHC 2 cut(s) 287, 576
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 2 cut(s) 321, 633
BspANI GGCC 2 cut(s) 11, 184
BspCNI CTCAG 4 cut(s) 180, 372, 379, 522
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 3 cut(s) 284, 380, 451
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 9 cut(s) 27, 87, 234, 335, 373, 386, 737, 775, 841
BspT104I TTCGAA 1 cut(s) 841
BspTI CTTAAG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 450
BssECI CCNNGG 3 cut(s) 12, 287, 723
BssNAI GTATAC 1 cut(s) 233
BssT1I CCWWGG 3 cut(s) 12, 287, 723
Bst1107I GTATAC 1 cut(s) 233
Bst4CI ACNGT 2 cut(s) 337, 849
Bst6I CTCTTC 1 cut(s) 242
BstAFI CTTAAG 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 841
BstDEI CTNAG 4 cut(s) 188, 359, 366, 509
BstDSI CCRYGG 1 cut(s) 287
BstEII GGTNACC 1 cut(s) 199
BstF5I GGATG 4 cut(s) 52, 91, 665, 733
BstHHI GCGC 1 cut(s) 432
BstMAI GTCTC 2 cut(s) 512, 812
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 630
BstPI GGTNACC 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 381
BstX2I RGATCY 4 cut(s) 19, 55, 79, 378
BstYI RGATCY 4 cut(s) 19, 55, 79, 378
BstZ17I GTATAC 1 cut(s) 233
BsuRI GGCC 2 cut(s) 11, 184
BtgI CCRYGG 1 cut(s) 287
BtsCI GGATG 4 cut(s) 52, 91, 665, 733
BveI ACCTGC 1 cut(s) 409
CciI TCATGA 1 cut(s) 408
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 165
CviAII CATG 4 cut(s) 288, 302, 409, 647
CviJI RGCY 7 cut(s) 11, 155, 184, 285, 371, 574, 798
CviKI_1 RGCY 7 cut(s) 11, 155, 184, 285, 371, 574, 798
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 4 cut(s) 188, 359, 366, 509
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco130I CCWWGG 3 cut(s) 12, 287, 723
Eco147I AGGCCT 1 cut(s) 11
Eco24I GRGCYC 2 cut(s) 287, 576
Eco47I GGWCC 1 cut(s) 291
Eco57I CTGAAG 1 cut(s) 72
Eco91I GGTNACC 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 199
EcoT14I CCWWGG 3 cut(s) 12, 287, 723
EcoT38I GRGCYC 2 cut(s) 287, 576
ErhI CCWWGG 3 cut(s) 12, 287, 723
Esp3I CGTCTC 1 cut(s) 512
FaeI CATG 4 cut(s) 291, 305, 412, 650
FaiI YATR 9 cut(s) 35, 170, 181, 233, 289, 303, 410, 603, 648
FatI CATG 4 cut(s) 287, 301, 408, 646
FauI CCCGC 1 cut(s) 626
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 3 cut(s) 121, 232, 732
FokI GGATG 4 cut(s) 59, 98, 672, 740
FriOI GRGCYC 2 cut(s) 287, 576
GlaI GCGC 1 cut(s) 431
HaeIII GGCC 2 cut(s) 11, 184
HapII CCGG 2 cut(s) 382, 581
HhaI GCGC 1 cut(s) 432
Hin1II CATG 4 cut(s) 291, 305, 412, 650
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 3 cut(s) 221, 498, 681
HpaII CCGG 2 cut(s) 382, 581
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 3 cut(s) 122, 233, 733
Hpy188I TCNGA 8 cut(s) 24, 60, 79, 189, 226, 253, 264, 756
Hpy188III TCNNGA 4 cut(s) 83, 409, 657, 689
Hpy8I GTNNAC 3 cut(s) 122, 233, 733
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 2 cut(s) 337, 849
HpyCH4V TGCA 3 cut(s) 541, 670, 760
HpyF10VI GCNNNNNNNGC 1 cut(s) 630
HpyF3I CTNAG 4 cut(s) 188, 359, 366, 509
Hsp92II CATG 4 cut(s) 291, 305, 412, 650
HspAI GCGC 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 298
LmnI GCTCC 1 cut(s) 282
LweI GCATC 4 cut(s) 37, 244, 616, 747
MaeIII GTNAC 1 cut(s) 199
MboII GAAGA 5 cut(s) 65, 229, 230, 494, 717
MflI RGATCY 4 cut(s) 19, 55, 79, 378
MhlI GDGCHC 2 cut(s) 287, 576
MluCI AATT 1 cut(s) 837
MlyI GAGTC 1 cut(s) 690
MseI TTAA 5 cut(s) 128, 158, 275, 396, 552
MspCI CTTAAG 1 cut(s) 157
MspI CCGG 2 cut(s) 382, 581
MspR9I CCNGG 1 cut(s) 383
MwoI GCNNNNNNNGC 1 cut(s) 630
NciI CCSGG 1 cut(s) 383
NcoI CCATGG 1 cut(s) 287
NlaIII CATG 4 cut(s) 291, 305, 412, 650
NlaIV GGNNCC 3 cut(s) 284, 380, 451
NspV TTCGAA 1 cut(s) 841
PagI TCATGA 1 cut(s) 408
PceI AGGCCT 1 cut(s) 11
PfeI GAWTC 2 cut(s) 221, 498
Ple19I CGATCG 1 cut(s) 262
PleI GAGTC 1 cut(s) 689
PpsI GAGTC 1 cut(s) 689
PspEI GGTNACC 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 284, 380, 451
PspPI GGNCC 1 cut(s) 291
PsuI RGATCY 4 cut(s) 19, 55, 79, 378
PvuI CGATCG 1 cut(s) 262
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SaqAI TTAA 5 cut(s) 128, 158, 275, 396, 552
Sau96I GGNCC 1 cut(s) 291
ScaI AGTACT 1 cut(s) 166
SchI GAGTC 1 cut(s) 690
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 2 cut(s) 287, 576
SetI ASST 8 cut(s) 201, 296, 394, 403, 455, 528, 701, 793
SfaNI GCATC 4 cut(s) 37, 244, 616, 747
SfuI TTCGAA 1 cut(s) 841
SinI GGWCC 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 1 cut(s) 837
SseBI AGGCCT 1 cut(s) 11
SsiI CCGC 2 cut(s) 321, 633
SspI AATATT 1 cut(s) 556
StuI AGGCCT 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 381
StyI CCWWGG 3 cut(s) 12, 287, 723
TaaI ACNGT 2 cut(s) 337, 849
TaqI TCGA 2 cut(s) 388, 841
TasI AATT 1 cut(s) 837
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 2 cut(s) 221, 498
Tru1I TTAA 5 cut(s) 128, 158, 275, 396, 552
Tru9I TTAA 5 cut(s) 128, 158, 275, 396, 552
TspDTI ATGAA 5 cut(s) 185, 397, 425, 549, 821
TspGWI ACGGA 1 cut(s) 494
Vha464I CTTAAG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 291
XmiI GTMKAC 3 cut(s) 121, 232, 732
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.