Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009866

Physical Location & Seq

Genomic Coordinates Reverse (-)

17208253 .. 17215656

Gene Structure 7404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25460.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTGCTGAGCTTGTCAATTCTGCAACAAGTGAGAAACTGACTGAAATGGATTGGACCAAGAATATTCAAATCTGTGAATTAGTTGCTCATGATAATAGACAAGCTAGAGATGTCATTAAAGCTATCAAGAAACGTCTGGGGAGTAAAAATGCTGATTCTCAACTTTACGCAGTTATGTTGCTGGAGATGTTGATGAACAATATCGGAGAACAAATTCATAAGCAAGTGATCGATGTTGGGGTTCTTCACAGTCTAGTGAAGATAGTCAAGAAAAAGTCGGACTTACCAGTGAGGGAGCGCATTTTTCTACTGCTAGATGCAACACAGACATCCCTTGGCGGTGCTTCTGGAAAATTCCCGCAGTATTATACTGCTTATTACGACTTGGTGAGTGCTGGAATACAGTTCCCTCAAAGGCCTCCTCCAGTACCTTCAAATCGCCTAGTACCAGAACCAGCTAAGAATAATTTACCTAACAGGGATGAAGGGGTTGCTCCACGAGTGGAGCCATGTGTTGTTCCTGAATCTAGTATTATCCAGAAGGCTGCTAATGCACTGGAGGTTTTGAAAGAGGTCCTTGATGCAGTTGATAGTCAGCATCCAGAGGGGGCAAAAGACGAATTCACCCTTGATCTTGTGGAGCAATGTTCATTCCAAAAGGAAAAAGTTATGCATCTTGTGATGACTTCTCGGAATGAGAAGGTGGTTTCTCAAGCTATCGAATTAAATGAGAAGCTCCAGAAGGTTCTTACAAGACATGATACCCTTCTTTCTTGCAAGCCTACATCAACCATAAACCATCTTGTTGAAGAAACGGGAGAGGAGGAAGAAGAAGAGCCAGAACAGCTTGTTCGAAGGTACATTCAACTACATGGGATTAGAATTTTCGTGGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

301

Amino Acids

33.77

Weight (kDa)

5.6

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	4 - 110	4.7e-21	VHS domain
GAT	PF03127	186 - 258	2.8e-10	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63640 AT5G63640
fragaria_vesca	FvH4_1g25460 FvH4_1g25460 FvH4_1g25460 FvH4_1g25460 FvH4_1g25460 FvH4_1g25460
malus_domestica	MD15G1138500.v1.1
prunus_persica	Prupe.4G281700_v2.0.a1 Prupe.4G281700_v2.0.a1
pyrus_communis	pycom15g12530
rosa_chinensis	RchiOBHm_Chr2g0123581
rosa_multiflora	Rmu_ssc0000091.1_g000012
rosa_roxburghii	Rroxscaffold_2G00120570
rosa_rugosa	Rorug02G0246300
rosa_samantha	Rh2AG305500 Rh2BG313400 Rh2CG291600 Rh2DG329300
rosa_wichuraiana	Rw2G024470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	342, 362
AcsI	RAATTY	4 cut(s)	216, 356, 623, 885
AfaI	GTAC	3 cut(s)	432, 450, 863
AgsI	TTSAA	5 cut(s)	71, 438, 571, 812, 869
AluBI	AGCT	7 cut(s)	13, 107, 125, 461, 719, 739, 850
AluI	AGCT	7 cut(s)	13, 107, 125, 461, 719, 739, 850
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	2 cut(s)	5, 548
ApoI	RAATTY	4 cut(s)	216, 356, 623, 885
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	57, 577
AsuHPI	GGTGA	2 cut(s)	403, 619
AsuII	TTCGAA	1 cut(s)	856
AvaII	GGWCC	2 cut(s)	57, 577
BauI	CACGAG	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	1 cut(s)	810
BfaI	CTAG	5 cut(s)	108, 257, 317, 446, 531
BisI	GCNGC	2 cut(s)	6, 549
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	2 cut(s)	7, 550
Bme18I	GGWCC	2 cut(s)	57, 577
BmgT120I	GGNCC	2 cut(s)	57, 577
BmiI	GGNNCC	1 cut(s)	510
BmsI	GCATC	4 cut(s)	310, 574, 610, 685
BpmI	CTGGAG	4 cut(s)	206, 411, 581, 725
Bpu1102I	GCTNAGC	1 cut(s)	9
Bpu14I	TTCGAA	1 cut(s)	856
BpuEI	CTTGAG	1 cut(s)	699
Bsa29I	ATCGAT	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	337
Bse1I	ACTGG	3 cut(s)	290, 428, 564
Bse3DI	GCAATG	1 cut(s)	653
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	3 cut(s)	332, 490, 601
BseMI	GCAATG	1 cut(s)	653
BseNI	ACTGG	3 cut(s)	290, 428, 564
BseRI	GAGGAG	2 cut(s)	414, 839
BseXI	GCAGC	1 cut(s)	535
BshFI	GGCC	1 cut(s)	421
BshVI	ATCGAT	1 cut(s)	234
BsnI	GGCC	1 cut(s)	421
Bsp119I	TTCGAA	1 cut(s)	856
Bsp143I	GATC	2 cut(s)	231, 634
Bsp1720I	GCTNAGC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	342, 362
BspANI	GGCC	1 cut(s)	421
BspDI	ATCGAT	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	510
BspQI	GCTCTTC	1 cut(s)	831
BspT104I	TTCGAA	1 cut(s)	856
BsrDI	GCAATG	1 cut(s)	653
BsrI	ACTGG	3 cut(s)	290, 428, 564
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	2 cut(s)	231, 634
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	337
Bst2BI	CACGAG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	254, 408
Bst6I	CTCTTC	1 cut(s)	831
BstBI	TTCGAA	1 cut(s)	856
BstC8I	GCNNGC	1 cut(s)	782
BstDEI	CTNAG	2 cut(s)	9, 462
BstF5I	GGATG	3 cut(s)	332, 490, 601
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	2 cut(s)	234, 637
BstMBI	GATC	2 cut(s)	231, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	554, 847
BstV1I	GCAGC	1 cut(s)	535
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	421
BsuTUI	ATCGAT	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	332, 490, 601
BtsIMutI	CAGTG	2 cut(s)	297, 557
Cac8I	GCNNGC	1 cut(s)	782
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	57, 577
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	3 cut(s)	431, 449, 862
CviAII	CATG	4 cut(s)	92, 513, 761, 875
CviQI	GTAC	3 cut(s)	431, 449, 862
DdeI	CTNAG	2 cut(s)	9, 462
DpnI	GATC	2 cut(s)	233, 636
DpnII	GATC	2 cut(s)	231, 634
Eam1104I	CTCTTC	1 cut(s)	831
EarI	CTCTTC	1 cut(s)	831
Eco130I	CCWWGG	1 cut(s)	337
Eco147I	AGGCCT	1 cut(s)	421
Eco47I	GGWCC	2 cut(s)	57, 577
EcoO109I	RGGNCCY	1 cut(s)	577
EcoRI	GAATTC	1 cut(s)	623
EcoT14I	CCWWGG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	4 cut(s)	95, 516, 764, 878
FaiI	YATR	9 cut(s)	93, 179, 222, 372, 514, 674, 762, 797, 876
FalI	AAGNNNNNCTT	4 cut(s)	269, 301, 564, 596
FatI	CATG	4 cut(s)	91, 512, 760, 874
FauI	CCCGC	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	6, 549
FokI	GGATG	3 cut(s)	319, 497, 588
Fsp4HI	GCNGC	2 cut(s)	6, 549
FspBI	CTAG	5 cut(s)	108, 257, 317, 446, 531
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	2 cut(s)	6, 549
GsuI	CTGGAG	4 cut(s)	206, 411, 581, 725
HaeIII	GGCC	1 cut(s)	421
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	4 cut(s)	95, 516, 764, 878
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HinfI	GANTC	2 cut(s)	158, 527
HphI	GGTGA	2 cut(s)	403, 619
Hpy188I	TCNGA	3 cut(s)	209, 283, 696
Hpy188III	TCNNGA	8 cut(s)	92, 130, 271, 351, 524, 541, 605, 742
HpyAV	CCTTC	7 cut(s)	444, 482, 538, 697, 739, 779, 852
HpyCH4III	ACNGT	2 cut(s)	254, 408
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	6 cut(s)	26, 323, 557, 587, 676, 780
HpyF10VI	GCNNNNNNNGC	2 cut(s)	554, 847
HpyF3I	CTNAG	2 cut(s)	9, 462
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	4 cut(s)	95, 516, 764, 878
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	231, 634
LguI	GCTCTTC	1 cut(s)	831
LmnI	GCTCC	5 cut(s)	298, 502, 508, 643, 744
Lsp1109I	GCAGC	1 cut(s)	535
LweI	GCATC	4 cut(s)	310, 574, 610, 685
MaeI	CTAG	5 cut(s)	108, 257, 317, 446, 531
MaeII	ACGT	1 cut(s)	136
MalI	GATC	2 cut(s)	233, 636
MboI	GATC	2 cut(s)	231, 634
MboII	GAAGA	6 cut(s)	239, 274, 824, 842, 845, 848
MluCI	AATT	8 cut(s)	19, 80, 216, 356, 469, 623, 725, 885
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	9 cut(s)	288, 423, 432, 435, 556, 568, 601, 817, 820
Mph1103I	ATGCAT	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	2 cut(s)	120, 728
MwoI	GCNNNNNNNGC	2 cut(s)	554, 847
NdeII	GATC	2 cut(s)	231, 634
NlaIII	CATG	4 cut(s)	95, 516, 764, 878
NlaIV	GGNNCC	1 cut(s)	510
NsiI	ATGCAT	1 cut(s)	678
NspV	TTCGAA	1 cut(s)	856
PagI	TCATGA	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	421
PciSI	GCTCTTC	1 cut(s)	831
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	158, 527
PkrI	GCNGC	2 cut(s)	7, 550
PpuMI	RGGWCCY	1 cut(s)	577
Psp5II	RGGWCCY	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	2 cut(s)	57, 577
PspPPI	RGGWCCY	1 cut(s)	577
RsaI	GTAC	3 cut(s)	432, 450, 863
RsaNI	GTAC	3 cut(s)	431, 449, 862
SapI	GCTCTTC	1 cut(s)	831
SaqAI	TTAA	2 cut(s)	120, 728
SatI	GCNGC	2 cut(s)	6, 549
Sau3AI	GATC	2 cut(s)	231, 634
Sau96I	GGNCC	2 cut(s)	57, 577
SfaNI	GCATC	4 cut(s)	310, 574, 610, 685
SfuI	TTCGAA	1 cut(s)	856
SinI	GGWCC	2 cut(s)	57, 577
SmlI	CTYRAG	1 cut(s)	714
SmoI	CTYRAG	1 cut(s)	714
Sse9I	AATT	8 cut(s)	19, 80, 216, 356, 469, 623, 725, 885
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	2 cut(s)	342, 362
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	5 cut(s)	108, 257, 317, 446, 531
StuI	AGGCCT	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	2 cut(s)	254, 408
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	3 cut(s)	234, 723, 856
TasI	AATT	8 cut(s)	19, 80, 216, 356, 469, 623, 725, 885
TfiI	GAWTC	2 cut(s)	158, 527
Tru1I	TTAA	2 cut(s)	120, 728
Tru9I	TTAA	2 cut(s)	120, 728
TscAI	CASTG	2 cut(s)	297, 564
TseI	GCWGC	2 cut(s)	5, 548
TspDTI	ATGAA	4 cut(s)	209, 212, 501, 642
TspRI	CASTG	2 cut(s)	297, 564
VpaK11BI	GGWCC	2 cut(s)	57, 577
XapI	RAATTY	4 cut(s)	216, 356, 623, 885
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	5 cut(s)	108, 257, 317, 446, 531
Zsp2I	ATGCAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.