Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009866

Physical Location & Seq

Genomic Coordinates Reverse (-)

10162408 .. 10171025

Gene Structure 8618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1138500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGCTCTACTACCAAATCACTGTAAACTCTCTTCGATTTGATCTGTGTGGGTTTTGGGTACATGGAGAAATGCTTAGGCTCTTGAGGATTTACCAGCTCATCTCCTTCTTCTTCCTCTTCCTCTCCCTGTTTCTTTACTGTAGAGTGGCATTAGCATATGAAGGGCCATCAGTTTTCAAGTTGCTGCTGCTGACATTCCAATTCTCCGTCTCAGCCTTTTCCAGAACTAAGCAAAAGATGGCTGCTGAGCTTGTCAATTCTGCTACAAGCGAAAAACTGGCTGAAATGGACTGGATGAAGAATATTCAAATATGTGAATTAGTTGCGCATGATCATAGGCAAGCTAGAGATGTCATTAAAGCAATAAAAAAACGACTGGGGAGTAAACATGCAAATTCTCAACTTTATGCGGTTATGTTGCTGGAGATGTTGATGAACAACATAGGAGAACATATTCATAAACAGGTGGTCGATGTTGGGCTTCTTCCTATTCTAGTAAAGATAGTCAAGAAAAAGTCAGACTTGCCAGTGCGAGAGCGCATCTTTCTACTTCTAGATGCCACACAGACATCCCTTGGTGGTGCTTCTGGGAAGTTCCCACAGTATTATACTGCTTATTATGACTTGGTGAGTGCTGGACTAGAGTTCCATCAAAGGCCTCATCAGGTCACTACGAATTGCCCAACGCCACAATCAGCTAAGAAAAGTTCACCTAATGGTGAATTAGCATCATCTATACATGAAAGGGTTGCTCCTCAAGCAGAGCCACATATTGTTCCTGAATCTAGTATTATTCAGAAGGCTAGTAATGCATTAGATGTTTTGAAGGAAGTTCTTGATGCTGTTGATAGTCAGCATCCTGAGGGGGCAAAGGATGAATTCACACTTGATCTTGTGGAACAATGTTCTTTCCAAAAGCAAAAAATTATGCATCTTGTGATGACTTCTCGGGATGAGAAGGCCGTTTCTCGGGCTATTGAGTTAAATGAGCAGCTCCAGAAGGTTCTTGCAAGACATGAATTCCTACTTTCTTGTAAGCCTATACCAACTGTTAACCATCTTAACCAAGAGGAGGCTGAGGAGGAAGAGGAGGCTGAGCAGCTTGTCCGAAGGCTACGGAAAGGAAAAGCTTGTGTAAGGCCTGAGGATGAAGAGCAATCAGCCGAGCGCCCCCACTTGGGCTTGCTTGGATCAACCCAGCCAGCAGAACGGCTGAACCGTCCACTTATACGACCACTTTCGTTAGAGCCATTGCATGAATCAAATGGGCATCTTCCACCTGCAAATGGGCATCTTCCACCCCCACCTGCAAAACACATTGAGAGGGAAAAATACTTCCAGGGAACCAAGACCGATGGTTCTGGTTTGGCTGGCCATGTGAGGGGTCTCTCATTACATAGTCGTAATGCCAGTAGCTCTCGCAGTGGAAGCATGGATTTCAGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

483

Amino Acids

54.32

Weight (kDa)

7.34

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	81 - 189	2.5e-20	VHS domain
GAT	PF03127	270 - 343	9.5e-11	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63640 AT5G63640
fragaria_vesca	FvH4_1g25460 FvH4_1g25460 FvH4_1g25460 FvH4_1g25460 FvH4_1g25460 FvH4_1g25460
malus_domestica	MD15G1138500.v1.1
prunus_persica	Prupe.4G281700_v2.0.a1 Prupe.4G281700_v2.0.a1
pyrus_communis	pycom15g12530
rosa_chinensis	RchiOBHm_Chr2g0123581
rosa_multiflora	Rmu_ssc0000091.1_g000012
rosa_roxburghii	Rroxscaffold_2G00120570
rosa_rugosa	Rorug02G0246300
rosa_samantha	Rh2AG305500 Rh2BG313400 Rh2CG291600 Rh2DG329300
rosa_wichuraiana	Rw2G024470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1288, 1315
Acc16I	TGCGCA	1 cut(s)	327
Acc36I	ACCTGC	2 cut(s)	1288, 1315
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	1 cut(s)	1198
AcoI	YGGCCR	1 cut(s)	1372
AcsI	RAATTY	3 cut(s)	394, 878, 1019
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	6 cut(s)	969, 1072, 1177, 1178, 1286, 1381
AgsI	TTSAA	3 cut(s)	178, 308, 826
AjnI	CCWGG	1 cut(s)	1338
AluBI	AGCT	8 cut(s)	97, 250, 344, 698, 994, 1102, 1130, 1416
AluI	AGCT	8 cut(s)	97, 250, 344, 698, 994, 1102, 1130, 1416
Alw26I	GTCTC	2 cut(s)	214, 1391
AlwI	GGATC	1 cut(s)	1198
Ama87I	CYCGRG	2 cut(s)	948, 969
AoxI	GGCC	5 cut(s)	164, 656, 960, 1139, 1372
ApeKI	GCWGC	5 cut(s)	184, 187, 242, 991, 1099
ApoI	RAATTY	3 cut(s)	394, 878, 1019
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	3 cut(s)	328, 540, 1170
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	640, 702, 731
AvaI	CYCGRG	2 cut(s)	948, 969
AxyI	CCTNAGG	2 cut(s)	861, 1143
BalI	TGGCCA	1 cut(s)	1374
BarI	GAAGNNNNNNTAC	2 cut(s)	15, 47
BbvCI	CCTCAGC	1 cut(s)	1077
BbvI	GCAGC	5 cut(s)	171, 174, 229, 1003, 1111
BccI	CCATC	5 cut(s)	175, 232, 657, 1065, 1349
BceAI	ACGGC	2 cut(s)	947, 1226
BciT130I	CCWGG	1 cut(s)	1340
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	214, 1391
BfaI	CTAG	6 cut(s)	345, 494, 554, 641, 786, 804
BfmI	CTRYAG	1 cut(s)	139
BfoI	RGCGCY	1 cut(s)	1171
BfuAI	ACCTGC	2 cut(s)	1288, 1315
BisI	GCNGC	5 cut(s)	185, 188, 243, 992, 1100
BlpI	GCTNAGC	2 cut(s)	246, 1095
BlsI	GCNGC	5 cut(s)	186, 189, 244, 993, 1101
Bme1390I	CCNGG	1 cut(s)	1340
BmeT110I	CYCGRG	2 cut(s)	948, 969
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	1345
BmrFI	CCNGG	1 cut(s)	1340
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	8 cut(s)	547, 549, 737, 829, 865, 940, 1279, 1300
BmuI	ACTGGG	1 cut(s)	386
BpmI	CTGGAG	2 cut(s)	443, 980
Bpu10I	CCTNAGC	2 cut(s)	74, 1077
Bpu1102I	GCTNAGC	2 cut(s)	246, 1095
BpuEI	CTTGAG	2 cut(s)	103, 741
BsaI	GGTCTC	1 cut(s)	1391
BsaJI	CCNNGG	2 cut(s)	574, 1339
Bsc4I	CCNNNNNNNGG	6 cut(s)	969, 1072, 1177, 1178, 1286, 1381
Bse1I	ACTGG	5 cut(s)	282, 296, 381, 527, 1410
Bse21I	CCTNAGG	2 cut(s)	861, 1143
Bse3DI	GCAATG	1 cut(s)	1250
BseBI	CCWGG	1 cut(s)	1340
BseDI	CCNNGG	2 cut(s)	574, 1339
BseGI	GGATG	6 cut(s)	300, 569, 856, 880, 958, 1153
BseLI	CCNNNNNNNGG	6 cut(s)	969, 1072, 1177, 1178, 1286, 1381
BseMI	GCAATG	1 cut(s)	1250
BseMII	CTCAG	6 cut(s)	225, 237, 852, 1068, 1086, 1134
BseNI	ACTGG	5 cut(s)	282, 296, 381, 527, 1410
BseRI	GAGGAG	4 cut(s)	744, 1085, 1094, 1103
BseXI	GCAGC	5 cut(s)	171, 174, 229, 1003, 1111
BseYI	CCCAGC	1 cut(s)	1197
BshFI	GGCC	5 cut(s)	166, 658, 962, 1141, 1374
BsiHKCI	CYCGRG	2 cut(s)	948, 969
BslI	CCNNNNNNNGG	6 cut(s)	969, 1072, 1177, 1178, 1286, 1381
BsmAI	GTCTC	2 cut(s)	214, 1391
BsmBI	CGTCTC	1 cut(s)	214
BsnI	GGCC	5 cut(s)	166, 658, 962, 1141, 1374
Bso31I	GGTCTC	1 cut(s)	1391
BsoBI	CYCGRG	2 cut(s)	948, 969
Bsp143I	GATC	4 cut(s)	40, 331, 889, 1190
Bsp1720I	GCTNAGC	2 cut(s)	246, 1095
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	5 cut(s)	166, 658, 962, 1141, 1374
BspCNI	CTCAG	6 cut(s)	224, 238, 853, 1069, 1087, 1135
BspLI	GGNNCC	1 cut(s)	1345
BspMI	ACCTGC	2 cut(s)	1288, 1315
BspPI	GGATC	1 cut(s)	1198
BspQI	GCTCTTC	1 cut(s)	1146
BspTNI	GGTCTC	1 cut(s)	1391
BsrDI	GCAATG	1 cut(s)	1250
BsrI	ACTGG	5 cut(s)	282, 296, 381, 527, 1410
BssECI	CCNNGG	2 cut(s)	574, 1339
BssMI	GATC	4 cut(s)	40, 331, 889, 1190
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	1340
Bst4CI	ACNGT	5 cut(s)	22, 140, 603, 1051, 1220
Bst6I	CTCTTC	4 cut(s)	36, 122, 1080, 1146
BstC8I	GCNNGC	4 cut(s)	342, 1184, 1203, 1372
BstDEI	CTNAG	9 cut(s)	74, 211, 228, 246, 699, 861, 1077, 1095, 1143
BstF5I	GGATG	6 cut(s)	300, 569, 856, 880, 958, 1153
BstH2I	RGCGCY	1 cut(s)	1171
BstHHI	GCGC	3 cut(s)	328, 540, 1170
BstKTI	GATC	4 cut(s)	43, 334, 892, 1193
BstMAI	GTCTC	2 cut(s)	214, 1391
BstMBI	GATC	4 cut(s)	40, 331, 889, 1190
BstMWI	GCNNNNNNNGC	3 cut(s)	758, 809, 1428
BstNI	CCWGG	1 cut(s)	1340
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	1338
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	5 cut(s)	171, 174, 229, 1003, 1111
Bsu36I	CCTNAGG	2 cut(s)	861, 1143
BsuRI	GGCC	5 cut(s)	166, 658, 962, 1141, 1374
BtsCI	GGATG	6 cut(s)	300, 569, 856, 880, 958, 1153
BtsI	GCAGTG	1 cut(s)	1429
BtsIMutI	CAGTG	3 cut(s)	18, 534, 1429
BveI	ACCTGC	2 cut(s)	1288, 1315
Cac8I	GCNNGC	4 cut(s)	342, 1184, 1203, 1372
CfoI	GCGC	3 cut(s)	328, 540, 1170
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	8 cut(s)	62, 329, 389, 740, 1016, 1256, 1376, 1432
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	9 cut(s)	74, 211, 228, 246, 699, 861, 1077, 1095, 1143
DpnI	GATC	4 cut(s)	42, 333, 891, 1192
DpnII	GATC	4 cut(s)	40, 331, 889, 1190
EaeI	YGGCCR	1 cut(s)	1372
Eam1104I	CTCTTC	4 cut(s)	36, 122, 1080, 1146
EarI	CTCTTC	4 cut(s)	36, 122, 1080, 1146
Eco130I	CCWWGG	1 cut(s)	574
Eco147I	AGGCCT	2 cut(s)	658, 1141
Eco31I	GGTCTC	1 cut(s)	1391
Eco81I	CCTNAGG	2 cut(s)	861, 1143
Eco88I	CYCGRG	2 cut(s)	948, 969
EcoRI	GAATTC	2 cut(s)	878, 1019
EcoRII	CCWGG	1 cut(s)	1338
EcoT14I	CCWWGG	1 cut(s)	574
EcoT22I	ATGCAT	2 cut(s)	814, 933
ErhI	CCWWGG	1 cut(s)	574
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	8 cut(s)	65, 332, 392, 743, 1019, 1259, 1379, 1435
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FatI	CATG	8 cut(s)	61, 328, 388, 739, 1015, 1255, 1375, 1431
FauNDI	CATATG	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	5 cut(s)	185, 188, 243, 992, 1100
FokI	GGATG	6 cut(s)	307, 556, 843, 887, 965, 1160
Fsp4HI	GCNGC	5 cut(s)	185, 188, 243, 992, 1100
FspBI	CTAG	6 cut(s)	345, 494, 554, 641, 786, 804
FspI	TGCGCA	1 cut(s)	327
GlaI	GCGC	3 cut(s)	327, 539, 1169
GluI	GCNGC	5 cut(s)	185, 188, 243, 992, 1100
GsaI	CCCAGC	1 cut(s)	1201
GsuI	CTGGAG	2 cut(s)	443, 980
HaeII	RGCGCY	1 cut(s)	1171
HaeIII	GGCC	5 cut(s)	166, 658, 962, 1141, 1374
HhaI	GCGC	3 cut(s)	328, 540, 1170
Hin1II	CATG	8 cut(s)	65, 332, 392, 743, 1019, 1259, 1379, 1435
Hin6I	GCGC	3 cut(s)	326, 538, 1168
HinP1I	GCGC	3 cut(s)	326, 538, 1168
HincII	GTYRAC	1 cut(s)	1054
HindII	GTYRAC	1 cut(s)	1054
HindIII	AAGCTT	1 cut(s)	1128
HinfI	GANTC	2 cut(s)	782, 1259
HpaI	GTTAAC	1 cut(s)	1054
HphI	GGTGA	3 cut(s)	640, 702, 731
Hpy166II	GTNNAC	5 cut(s)	25, 386, 710, 1054, 1223
Hpy188I	TCNGA	3 cut(s)	520, 798, 1109
Hpy188III	TCNNGA	9 cut(s)	82, 222, 508, 554, 779, 836, 860, 950, 997
Hpy8I	GTNNAC	5 cut(s)	25, 386, 710, 1054, 1223
HpyAV	CCTTC	7 cut(s)	115, 155, 793, 820, 952, 994, 1104
HpyCH4III	ACNGT	5 cut(s)	22, 140, 603, 1051, 1220
HpyCH4V	TGCA	7 cut(s)	392, 812, 931, 1010, 1255, 1283, 1310
HpyF10VI	GCNNNNNNNGC	3 cut(s)	758, 809, 1428
HpyF3I	CTNAG	9 cut(s)	74, 211, 228, 246, 699, 861, 1077, 1095, 1143
Hsp92II	CATG	8 cut(s)	65, 332, 392, 743, 1019, 1259, 1379, 1435
HspAI	GCGC	3 cut(s)	326, 538, 1168
Ksp22I	TGATCA	1 cut(s)	331
KspAI	GTTAAC	1 cut(s)	1054
Kzo9I	GATC	4 cut(s)	40, 331, 889, 1190
LguI	GCTCTTC	1 cut(s)	1146
LmnI	GCTCC	2 cut(s)	757, 999
Lsp1109I	GCAGC	5 cut(s)	171, 174, 229, 1003, 1111
LweI	GCATC	8 cut(s)	547, 549, 737, 829, 865, 940, 1279, 1300
MaeI	CTAG	6 cut(s)	345, 494, 554, 641, 786, 804
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	4 cut(s)	42, 333, 891, 1192
MboI	GATC	4 cut(s)	40, 331, 889, 1190
MlsI	TGGCCA	1 cut(s)	1374
MluCI	AATT	9 cut(s)	200, 256, 317, 394, 676, 722, 878, 924, 1019
MluNI	TGGCCA	1 cut(s)	1374
Mox20I	TGGCCA	1 cut(s)	1374
Mph1103I	ATGCAT	2 cut(s)	814, 933
MroXI	GAANNNNTTC	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	1374
MseI	TTAA	4 cut(s)	357, 983, 1053, 1062
Msp20I	TGGCCA	1 cut(s)	1374
MspR9I	CCNGG	1 cut(s)	1340
MvaI	CCWGG	1 cut(s)	1340
MwoI	GCNNNNNNNGC	3 cut(s)	758, 809, 1428
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	4 cut(s)	40, 331, 889, 1190
NlaIII	CATG	8 cut(s)	65, 332, 392, 743, 1019, 1259, 1379, 1435
NlaIV	GGNNCC	1 cut(s)	1345
NmeAIII	GCCGAG	1 cut(s)	1189
NmuCI	GTSAC	1 cut(s)	667
NsbI	TGCGCA	1 cut(s)	327
NsiI	ATGCAT	2 cut(s)	814, 933
NspI	RCATGY	1 cut(s)	392
PaqCI	CACCTGC	2 cut(s)	1288, 1315
PceI	AGGCCT	2 cut(s)	658, 1141
PciSI	GCTCTTC	1 cut(s)	1146
PcsI	WCGNNNNNNNCGW	1 cut(s)	1216
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	782, 1259
PkrI	GCNGC	5 cut(s)	186, 189, 244, 993, 1101
Psp6I	CCWGG	1 cut(s)	1338
PspFI	CCCAGC	1 cut(s)	1197
PspGI	CCWGG	1 cut(s)	1338
PspN4I	GGNNCC	1 cut(s)	1345
PspPI	GGNCC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	1146
SaqAI	TTAA	4 cut(s)	357, 983, 1053, 1062
SatI	GCNGC	5 cut(s)	185, 188, 243, 992, 1100
Sau3AI	GATC	4 cut(s)	40, 331, 889, 1190
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	1340
SfaNI	GCATC	8 cut(s)	547, 549, 737, 829, 865, 940, 1279, 1300
SfcI	CTRYAG	1 cut(s)	139
SmlI	CTYRAG	2 cut(s)	82, 756
SmoI	CTYRAG	2 cut(s)	82, 756
Sse9I	AATT	9 cut(s)	200, 256, 317, 394, 676, 722, 878, 924, 1019
SseBI	AGGCCT	2 cut(s)	658, 1141
SsiI	CCGC	1 cut(s)	410
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	6 cut(s)	345, 494, 554, 641, 786, 804
StuI	AGGCCT	2 cut(s)	658, 1141
StyD4I	CCNGG	1 cut(s)	1338
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	5 cut(s)	22, 140, 603, 1051, 1220
TaqI	TCGA	2 cut(s)	34, 471
TaqII	GACCGA	1 cut(s)	1367
TasI	AATT	9 cut(s)	200, 256, 317, 394, 676, 722, 878, 924, 1019
TfiI	GAWTC	2 cut(s)	782, 1259
Tru1I	TTAA	4 cut(s)	357, 983, 1053, 1062
Tru9I	TTAA	4 cut(s)	357, 983, 1053, 1062
TscAI	CASTG	3 cut(s)	25, 534, 1429
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	5 cut(s)	184, 187, 242, 991, 1099
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	9 cut(s)	174, 311, 446, 449, 756, 891, 1032, 1164, 1272
TspGWI	ACGGA	2 cut(s)	196, 1132
TspRI	CASTG	3 cut(s)	25, 534, 1429
XapI	RAATTY	3 cut(s)	394, 878, 1019
XbaI	TCTAGA	1 cut(s)	553
XceI	RCATGY	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	6 cut(s)	345, 494, 554, 641, 786, 804
Zsp2I	ATGCAT	2 cut(s)	814, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.