pycom15g12530
MYB Family

Target of Myb protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009866
Physical Location & Seq
Reverse (-)
8542279 .. 8549275
6997 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12530.2

Sequence Viewer

Length: 1185 bp
ATGGACTGGACGAAGAATATTGAAATATGTGAATTAGTTGCGCATGATCACAGGCAAGCTAGAGATGTCATTAAAGCAATCAAAAAACGACTGGGGAGTAAACATGCAAATTCTCAACTTTATGCAGTTATGTTGCTGGAGATGTTGATGAACAACATAGGAGAACATGTTCATAAACAGGTGGTTGATGTTGGGCTTCTCCCTATTCTAGTAAAGATAGTCAAGAAAAAGTCAGACTTGCCAGTGCGAGAGCGCATCTTTCTACTTCTAGATGCCACACAGACATCCCTTGGTGGTGCTTCTGGGAAGTTCCCACAGTATTATACTGCTTATTATGACTTGGTGAGTGCTGGACTAGAGTTCCATCAAAGGCCTCGTCAGGTCACTACGAATTGCCCAACGCCACAATCAGCTAAGAAAAGTTCACCTAATGGTGAATTAGCATCATCTATACATGAAGGGGTTGCTCCTCAAGCAGAGCCACATATTGTTCCTGAATCTAGTATTATTCAGAAGGCTAGTAATGCATTAGATGTTTTGAAGGAAGTTCTTGATGCTGTTGATAGTCAGCATCCTGAGGGGGCAAAAGATGAATTCACACTTGATCTTGTGGAACAATGTTCTTTCCAAAAGCAAAAAATTATGCATCTTGTGATGACTTCTCGGGATGAGAAGGCAGTTTTTCGGGCTATTGAGTTAAATGAGCAGCTCCAGAAGGTTCTTGCAAGACATGAATTCCTACTTTCTTGTAAGCCTACACCAACTGTTAACCATCTTAACCAAGAGGAGGCTGAGGAGGAAGAGGAGGCTGAGCAGCTTGTCCGAAGGCTACGGAAAGGAAAAGCTTGTGTAAGGCCTGAGGATGAAGAGCAATCAGCCGAGCGCCCCCACTTGGGCTTGCTTGGATCAACCCAGCCAGCAGAACGGCTGAACCGTCCACTTATACGACCACTTTCGTTAGAGCCATTGCATGAATCAAATGGGCATCTTCCGCCTGCAAATGGGCATCTTCCACCTGCAAATGGGCATCTTCCACCCCCACCTGCAAAACACATTGAGAGGGAAAAATATTTCCAGGGGACCAAGACCGATGGTTCTGGTTTGGCTGGCCATGTGAGGGGTCTCTCATTACATAGACGCAATGCCAGTAGCTCTCGCAGTGGAAGCATGGATTTCAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAT VHS

Protein Analysis

395

Amino Acids

43.92

Weight (kDa)

6.71

Isoelectric Point (pI)

57.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1024, 1051
Acc16I TGCGCA 1 cut(s) 42
Acc36I ACCTGC 2 cut(s) 1024, 1051
AciI CCGC 1 cut(s) 992
AclWI GGATC 1 cut(s) 913
AcoI YGGCCR 1 cut(s) 1108
AcsI RAATTY 3 cut(s) 109, 593, 734
AfiI CCNNNNNNNGG 6 cut(s) 787, 892, 893, 1001, 1022, 1117
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 2 cut(s) 23, 541
AjnI CCWGG 1 cut(s) 1074
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
AluBI AGCT 6 cut(s) 59, 413, 709, 817, 845, 1152
AluI AGCT 6 cut(s) 59, 413, 709, 817, 845, 1152
Alw26I GTCTC 1 cut(s) 1127
AlwI GGATC 1 cut(s) 913
Ama87I CYCGRG 1 cut(s) 663
AoxI GGCC 3 cut(s) 371, 854, 1108
ApeKI GCWGC 2 cut(s) 706, 814
ApoI RAATTY 3 cut(s) 109, 593, 734
ArsI GACNNNNNNTTYG 2 cut(s) 361, 393
Asp700I GAANNNNTTC 1 cut(s) 168
AspLEI GCGC 3 cut(s) 43, 255, 885
AspS9I GGNCC 1 cut(s) 1080
AsuHPI GGTGA 3 cut(s) 355, 417, 446
AvaI CYCGRG 1 cut(s) 663
AvaII GGWCC 1 cut(s) 1080
AxyI CCTNAGG 2 cut(s) 576, 858
BalI TGGCCA 1 cut(s) 1110
BbvCI CCTCAGC 1 cut(s) 792
BbvI GCAGC 2 cut(s) 718, 826
BccI CCATC 3 cut(s) 372, 780, 1085
BceAI ACGGC 1 cut(s) 941
BciT130I CCWGG 1 cut(s) 1076
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 1127
BfaI CTAG 6 cut(s) 60, 209, 269, 356, 501, 519
BfoI RGCGCY 1 cut(s) 886
BfuAI ACCTGC 2 cut(s) 1024, 1051
BisI GCNGC 2 cut(s) 707, 815
BlpI GCTNAGC 1 cut(s) 810
BlsI GCNGC 2 cut(s) 708, 816
Bme1390I CCNGG 1 cut(s) 1076
Bme18I GGWCC 1 cut(s) 1080
BmeT110I CYCGRG 1 cut(s) 663
BmgT120I GGNCC 1 cut(s) 1080
BmiI GGNNCC 1 cut(s) 1081
BmrFI CCNGG 1 cut(s) 1076
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 9 cut(s) 262, 264, 452, 544, 580, 655, 994, 1015, 1036
BmuI ACTGGG 1 cut(s) 101
BpmI CTGGAG 2 cut(s) 158, 695
Bpu10I CCTNAGC 1 cut(s) 792
Bpu1102I GCTNAGC 1 cut(s) 810
BpuEI CTTGAG 1 cut(s) 456
BsaI GGTCTC 1 cut(s) 1127
BsaJI CCNNGG 2 cut(s) 289, 1075
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 6 cut(s) 787, 892, 893, 1001, 1022, 1117
Bse1I ACTGG 4 cut(s) 11, 96, 242, 1146
Bse21I CCTNAGG 2 cut(s) 576, 858
Bse3DI GCAATG 2 cut(s) 965, 1147
BseBI CCWGG 1 cut(s) 1076
BseDI CCNNGG 2 cut(s) 289, 1075
BseGI GGATG 4 cut(s) 284, 571, 673, 868
BseLI CCNNNNNNNGG 6 cut(s) 787, 892, 893, 1001, 1022, 1117
BseMI GCAATG 2 cut(s) 965, 1147
BseMII CTCAG 4 cut(s) 567, 783, 801, 849
BseNI ACTGG 4 cut(s) 11, 96, 242, 1146
BseRI GAGGAG 4 cut(s) 459, 800, 809, 818
BseXI GCAGC 2 cut(s) 718, 826
BseYI CCCAGC 1 cut(s) 912
BshFI GGCC 3 cut(s) 373, 856, 1110
BsiHKCI CYCGRG 1 cut(s) 663
BslFI GGGAC 1 cut(s) 1093
BslI CCNNNNNNNGG 6 cut(s) 787, 892, 893, 1001, 1022, 1117
BsmAI GTCTC 1 cut(s) 1127
BsmFI GGGAC 1 cut(s) 1093
BsnI GGCC 3 cut(s) 373, 856, 1110
Bso31I GGTCTC 1 cut(s) 1127
BsoBI CYCGRG 1 cut(s) 663
Bsp143I GATC 3 cut(s) 46, 604, 905
Bsp1720I GCTNAGC 1 cut(s) 810
BspACI CCGC 1 cut(s) 992
BspANI GGCC 3 cut(s) 373, 856, 1110
BspCNI CTCAG 4 cut(s) 568, 784, 802, 850
BspLI GGNNCC 1 cut(s) 1081
BspMI ACCTGC 2 cut(s) 1024, 1051
BspPI GGATC 1 cut(s) 913
BspQI GCTCTTC 1 cut(s) 861
BspTNI GGTCTC 1 cut(s) 1127
BsrDI GCAATG 2 cut(s) 965, 1147
BsrI ACTGG 4 cut(s) 11, 96, 242, 1146
BssECI CCNNGG 2 cut(s) 289, 1075
BssMI GATC 3 cut(s) 46, 604, 905
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 1076
Bst4CI ACNGT 3 cut(s) 318, 766, 935
Bst6I CTCTTC 2 cut(s) 795, 861
BstC8I GCNNGC 5 cut(s) 57, 899, 918, 996, 1108
BstDEI CTNAG 5 cut(s) 414, 576, 792, 810, 858
BstF5I GGATG 4 cut(s) 284, 571, 673, 868
BstH2I RGCGCY 1 cut(s) 886
BstHHI GCGC 3 cut(s) 43, 255, 885
BstKTI GATC 3 cut(s) 49, 607, 908
BstMAI GTCTC 1 cut(s) 1127
BstMBI GATC 3 cut(s) 46, 604, 905
BstMWI GCNNNNNNNGC 4 cut(s) 473, 524, 991, 1164
BstNI CCWGG 1 cut(s) 1076
BstNSI RCATGY 2 cut(s) 107, 170
BstSCI CCNGG 1 cut(s) 1074
BstV1I GCAGC 2 cut(s) 718, 826
Bsu36I CCTNAGG 2 cut(s) 576, 858
BsuRI GGCC 3 cut(s) 373, 856, 1110
BtsCI GGATG 4 cut(s) 284, 571, 673, 868
BtsI GCAGTG 1 cut(s) 1165
BtsIMutI CAGTG 2 cut(s) 249, 1165
BveI ACCTGC 2 cut(s) 1024, 1051
Cac8I GCNNGC 5 cut(s) 57, 899, 918, 996, 1108
CfoI GCGC 3 cut(s) 43, 255, 885
Cfr13I GGNCC 1 cut(s) 1080
CseI GACGC 1 cut(s) 1146
CviAII CATG 8 cut(s) 44, 104, 167, 455, 731, 971, 1112, 1168
DdeI CTNAG 5 cut(s) 414, 576, 792, 810, 858
DpnI GATC 3 cut(s) 48, 606, 907
DpnII GATC 3 cut(s) 46, 604, 905
EaeI YGGCCR 1 cut(s) 1108
Eam1104I CTCTTC 2 cut(s) 795, 861
EarI CTCTTC 2 cut(s) 795, 861
EciI GGCGGA 1 cut(s) 981
Eco130I CCWWGG 1 cut(s) 289
Eco147I AGGCCT 2 cut(s) 373, 856
Eco31I GGTCTC 1 cut(s) 1127
Eco47I GGWCC 1 cut(s) 1080
Eco81I CCTNAGG 2 cut(s) 576, 858
Eco88I CYCGRG 1 cut(s) 663
EcoRI GAATTC 2 cut(s) 593, 734
EcoRII CCWGG 1 cut(s) 1074
EcoT14I CCWWGG 1 cut(s) 289
EcoT22I ATGCAT 2 cut(s) 529, 648
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 8 cut(s) 47, 107, 170, 458, 734, 974, 1115, 1171
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 1093
FatI CATG 8 cut(s) 43, 103, 166, 454, 730, 970, 1111, 1167
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 707, 815
FokI GGATG 4 cut(s) 271, 558, 680, 875
Fsp4HI GCNGC 2 cut(s) 707, 815
FspBI CTAG 6 cut(s) 60, 209, 269, 356, 501, 519
FspI TGCGCA 1 cut(s) 42
GlaI GCGC 3 cut(s) 42, 254, 884
GluI GCNGC 2 cut(s) 707, 815
GsaI CCCAGC 1 cut(s) 916
GsuI CTGGAG 2 cut(s) 158, 695
HaeII RGCGCY 1 cut(s) 886
HaeIII GGCC 3 cut(s) 373, 856, 1110
HgaI GACGC 1 cut(s) 1146
HhaI GCGC 3 cut(s) 43, 255, 885
Hin1II CATG 8 cut(s) 47, 107, 170, 458, 734, 974, 1115, 1171
Hin6I GCGC 3 cut(s) 41, 253, 883
HinP1I GCGC 3 cut(s) 41, 253, 883
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HindIII AAGCTT 1 cut(s) 843
HinfI GANTC 2 cut(s) 497, 974
HpaI GTTAAC 1 cut(s) 769
HphI GGTGA 3 cut(s) 355, 417, 446
Hpy166II GTNNAC 4 cut(s) 101, 425, 769, 938
Hpy188I TCNGA 3 cut(s) 235, 513, 824
Hpy188III TCNNGA 7 cut(s) 223, 269, 494, 551, 575, 665, 712
Hpy8I GTNNAC 4 cut(s) 101, 425, 769, 938
HpyAV CCTTC 6 cut(s) 452, 508, 535, 667, 709, 819
HpyCH4III ACNGT 3 cut(s) 318, 766, 935
HpyCH4V TGCA 9 cut(s) 107, 125, 527, 646, 725, 970, 998, 1019, 1046
HpyF10VI GCNNNNNNNGC 4 cut(s) 473, 524, 991, 1164
HpyF3I CTNAG 5 cut(s) 414, 576, 792, 810, 858
Hsp92II CATG 8 cut(s) 47, 107, 170, 458, 734, 974, 1115, 1171
HspAI GCGC 3 cut(s) 41, 253, 883
Ksp22I TGATCA 1 cut(s) 46
KspAI GTTAAC 1 cut(s) 769
Kzo9I GATC 3 cut(s) 46, 604, 905
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 2 cut(s) 472, 714
Lsp1109I GCAGC 2 cut(s) 718, 826
LweI GCATC 9 cut(s) 262, 264, 452, 544, 580, 655, 994, 1015, 1036
MaeI CTAG 6 cut(s) 60, 209, 269, 356, 501, 519
MaeIII GTNAC 1 cut(s) 382
MalI GATC 3 cut(s) 48, 606, 907
MboI GATC 3 cut(s) 46, 604, 905
MboII GAAGA 6 cut(s) 25, 812, 878, 980, 1001, 1022
MlsI TGGCCA 1 cut(s) 1110
MluCI AATT 7 cut(s) 32, 109, 391, 437, 593, 639, 734
MluNI TGGCCA 1 cut(s) 1110
Mox20I TGGCCA 1 cut(s) 1110
Mph1103I ATGCAT 2 cut(s) 529, 648
MroXI GAANNNNTTC 1 cut(s) 168
MscI TGGCCA 1 cut(s) 1110
MseI TTAA 4 cut(s) 72, 698, 768, 777
Msp20I TGGCCA 1 cut(s) 1110
MspR9I CCNGG 1 cut(s) 1076
MvaI CCWGG 1 cut(s) 1076
MwoI GCNNNNNNNGC 4 cut(s) 473, 524, 991, 1164
NdeII GATC 3 cut(s) 46, 604, 905
NlaIII CATG 8 cut(s) 47, 107, 170, 458, 734, 974, 1115, 1171
NlaIV GGNNCC 1 cut(s) 1081
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 1 cut(s) 382
NsbI TGCGCA 1 cut(s) 42
NsiI ATGCAT 2 cut(s) 529, 648
NspI RCATGY 2 cut(s) 107, 170
PaqCI CACCTGC 2 cut(s) 1024, 1051
PceI AGGCCT 2 cut(s) 373, 856
PciI ACATGT 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 861
PcsI WCGNNNNNNNCGW 1 cut(s) 931
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 497, 974
PkrI GCNGC 2 cut(s) 708, 816
PscI ACATGT 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 1074
PspFI CCCAGC 1 cut(s) 912
PspGI CCWGG 1 cut(s) 1074
PspN4I GGNNCC 1 cut(s) 1081
PspPI GGNCC 1 cut(s) 1080
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 4 cut(s) 72, 698, 768, 777
SatI GCNGC 2 cut(s) 707, 815
Sau3AI GATC 3 cut(s) 46, 604, 905
Sau96I GGNCC 1 cut(s) 1080
ScrFI CCNGG 1 cut(s) 1076
SfaNI GCATC 9 cut(s) 262, 264, 452, 544, 580, 655, 994, 1015, 1036
SinI GGWCC 1 cut(s) 1080
SmlI CTYRAG 1 cut(s) 471
SmoI CTYRAG 1 cut(s) 471
Sse9I AATT 7 cut(s) 32, 109, 391, 437, 593, 639, 734
SseBI AGGCCT 2 cut(s) 373, 856
SsiI CCGC 1 cut(s) 992
SspI AATATT 2 cut(s) 19, 1070
SspMI CTAG 6 cut(s) 60, 209, 269, 356, 501, 519
StuI AGGCCT 2 cut(s) 373, 856
StyD4I CCNGG 1 cut(s) 1074
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 318, 766, 935
TaqII GACCGA 1 cut(s) 1103
TasI AATT 7 cut(s) 32, 109, 391, 437, 593, 639, 734
TfiI GAWTC 2 cut(s) 497, 974
Tru1I TTAA 4 cut(s) 72, 698, 768, 777
Tru9I TTAA 4 cut(s) 72, 698, 768, 777
TscAI CASTG 2 cut(s) 249, 1165
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 2 cut(s) 706, 814
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 7 cut(s) 161, 164, 471, 606, 747, 879, 987
TspGWI ACGGA 1 cut(s) 847
TspRI CASTG 2 cut(s) 249, 1165
VpaK11BI GGWCC 1 cut(s) 1080
XapI RAATTY 3 cut(s) 109, 593, 734
XbaI TCTAGA 1 cut(s) 268
XceI RCATGY 2 cut(s) 107, 170
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 6 cut(s) 60, 209, 269, 356, 501, 519
Zsp2I ATGCAT 2 cut(s) 529, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.