RchiOBHm_Chr2g0123581
MYB Family

Target of Myb protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0009866
Physical Location & Seq
Reverse (-)
36773459 .. 36783030
9572 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49587

Sequence Viewer

Length: 1191 bp
ATGGCTGCTGAGCTTGTCAATTCTGCAACGAGTGAGAAACTGAGTGAAATGGATTGGACCAAGAATATTCAAATCTGTGAATTAGTTGCTCATGATAATAGACAAGCTAGAGATGTCATTAAAGCTATCAAGAAACGTCTGGGGAGTAAAAATGCAAATTCTCAACTTTATGCAGTTATGTTGCTGGAGATGTTGATGAACAACATTGGAGAACATATTCATAAGCAAGTGATCGAAGTTGGGATTCTTCCTAGTCTAGTGAAGATAGTCAAGAAAAAGTCAGACTTACCAGTGAGGGAGCGCATCTTTCTACTGCTAGATGCGACACAGACATCCCTTGGCGGTGCTTCTGGAAAGTTCCCTCAGTATTATACTGCTTATTACGACTTGGTGAGTGCTGGAATACAGTTCCCTCAAAGGCCTCCTCCGGTCCCTTCAAATAGCCAAGTACCAGAACCAGCTAAGAATAATTTACCTAACAGGGATAACGGGATTGCTCCACGAGTGGAGCCACATGTTGTTCCTGAATCTAGTATTATTCAGAAGGCTGGTAATGCACTGGAGGTTTTGAAAGAGGTCCTTGATGCAGTTGATAGTCAGCATCCAGAGGGGGCAAAAGACGAATTCACACTTGATCTTGTGGAGCAATGTTCTTTCCAAAAGCAAAAAGTTATGCATCTTGTAATGACTTCTCGGGATGAGAAGGTAGTTTCTCAAGCTATTGAATTAAATGAGAAGCTCCAGAAGGTTCTTACAAGACATGATGCCCTGCTTTCTTGCAATTCTACATTGACTGTGAACCGTCTTATTGAAGAACAGGGAGAGGAGGAAGAAGAAGAGCCAGAACAGCTTGTTCGAAGGCTGCGGAAAGGAAAAGCTTGTGTGAGGCCTGAGGATGAAGAGCAGTCAGCTGAGCATTCCCACTTGGGTTTGCTTGGATCATCCAGGCCTGGGGAAAGGCTCAACCGTCCACTTATACGACCACTTTGCTTGGAGCCATCGCCTGAATCAAATGGACATCTTCCACCTGTTGCTATTCCACCCCCACCTGCAAAGCACATTGAGAGGGAAAGATACTTCCAGGAAACCAAAGTGGATAGCTCTACTTTGGCTGGCCACATCAGAGGTCTCTCATTACATAGTCGCAATGCAAGTAGCTCTCTCAGTGGAAGCATGGATTTTAGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAT VHS

Protein Analysis

396

Amino Acids

44.07

Weight (kDa)

6.05

Isoelectric Point (pI)

62.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VHS PF00790 4 - 110 2.5e-21 VHS domain
GAT PF03127 187 - 258 3.4e-11 GAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1057
Acc36I ACCTGC 1 cut(s) 1057
AciI CCGC 2 cut(s) 342, 865
AclWI GGATC 1 cut(s) 946
AcoI YGGCCR 1 cut(s) 1114
AcsI RAATTY 2 cut(s) 157, 623
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 1 cut(s) 951
AflIII ACRYGT 1 cut(s) 514
AgsI TTSAA 5 cut(s) 71, 438, 571, 725, 812
AjnI CCWGG 3 cut(s) 944, 949, 1080
Alw26I GTCTC 1 cut(s) 1133
AlwI GGATC 1 cut(s) 946
Ama87I CYCGRG 1 cut(s) 693
AoxI GGCC 4 cut(s) 419, 887, 947, 1114
ApeKI GCWGC 2 cut(s) 5, 862
ApoI RAATTY 2 cut(s) 157, 623
Asp700I GAANNNNTTC 1 cut(s) 216
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 3 cut(s) 57, 430, 577
AsuHPI GGTGA 1 cut(s) 403
AsuII TTCGAA 1 cut(s) 856
AvaI CYCGRG 1 cut(s) 693
AvaII GGWCC 3 cut(s) 57, 430, 577
AxyI CCTNAGG 1 cut(s) 891
BalI TGGCCA 1 cut(s) 1116
BauI CACGAG 1 cut(s) 501
BbvI GCAGC 1 cut(s) 849
BccI CCATC 1 cut(s) 1006
BcgI CGANNNNNNTGC 2 cut(s) 969, 1003
BciT130I CCWGG 3 cut(s) 946, 951, 1082
BcoDI GTCTC 1 cut(s) 1133
BfaI CTAG 5 cut(s) 108, 252, 257, 317, 531
BfuAI ACCTGC 1 cut(s) 1057
BisI GCNGC 2 cut(s) 6, 863
BlpI GCTNAGC 2 cut(s) 9, 912
BlsI GCNGC 2 cut(s) 7, 864
Bme1390I CCNGG 3 cut(s) 946, 951, 1082
Bme18I GGWCC 3 cut(s) 57, 430, 577
BmeT110I CYCGRG 1 cut(s) 693
BmgT120I GGNCC 3 cut(s) 57, 430, 577
BmiI GGNNCC 3 cut(s) 432, 510, 996
BmrFI CCNGG 3 cut(s) 946, 951, 1082
BmsI GCATC 6 cut(s) 310, 312, 574, 610, 685, 754
BpmI CTGGAG 3 cut(s) 206, 581, 725
Bpu1102I GCTNAGC 2 cut(s) 9, 912
Bpu14I TTCGAA 1 cut(s) 856
BpuEI CTTGAG 1 cut(s) 699
BsaI GGTCTC 1 cut(s) 1133
BsaJI CCNNGG 2 cut(s) 337, 950
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 1 cut(s) 951
Bse1I ACTGG 2 cut(s) 290, 564
Bse21I CCTNAGG 1 cut(s) 891
Bse3DI GCAATG 2 cut(s) 653, 1153
BseBI CCWGG 3 cut(s) 946, 951, 1082
BseDI CCNNGG 2 cut(s) 337, 950
BseGI GGATG 5 cut(s) 332, 601, 703, 901, 941
BseLI CCNNNNNNNGG 1 cut(s) 951
BseMI GCAATG 2 cut(s) 653, 1153
BseMII CTCAG 5 cut(s) 32, 377, 882, 903, 1177
BseNI ACTGG 2 cut(s) 290, 564
BseRI GAGGAG 2 cut(s) 414, 839
BseXI GCAGC 1 cut(s) 849
BshFI GGCC 4 cut(s) 421, 889, 949, 1116
BsiHKCI CYCGRG 1 cut(s) 693
BsiSI CCGG 1 cut(s) 428
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 1 cut(s) 951
BsmAI GTCTC 1 cut(s) 1133
BsmFI GGGAC 1 cut(s) 416
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 4 cut(s) 421, 889, 949, 1116
Bso31I GGTCTC 1 cut(s) 1133
BsoBI CYCGRG 1 cut(s) 693
Bsp119I TTCGAA 1 cut(s) 856
Bsp143I GATC 3 cut(s) 231, 634, 938
Bsp1720I GCTNAGC 2 cut(s) 9, 912
BspACI CCGC 2 cut(s) 342, 865
BspANI GGCC 4 cut(s) 421, 889, 949, 1116
BspCNI CTCAG 5 cut(s) 33, 376, 883, 904, 1176
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 432, 510, 996
BspMI ACCTGC 1 cut(s) 1057
BspPI GGATC 1 cut(s) 946
BspQI GCTCTTC 2 cut(s) 831, 894
BspT104I TTCGAA 1 cut(s) 856
BspTNI GGTCTC 1 cut(s) 1133
BsrDI GCAATG 2 cut(s) 653, 1153
BsrI ACTGG 2 cut(s) 290, 564
BssECI CCNNGG 2 cut(s) 337, 950
BssMI GATC 3 cut(s) 231, 634, 938
BssSI CACGAG 1 cut(s) 501
BssT1I CCWWGG 1 cut(s) 337
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 3 cut(s) 946, 951, 1082
Bst4CI ACNGT 4 cut(s) 408, 796, 803, 968
Bst6I CTCTTC 2 cut(s) 831, 894
BstBI TTCGAA 1 cut(s) 856
BstC8I GCNNGC 1 cut(s) 1114
BstDEI CTNAG 7 cut(s) 9, 41, 363, 462, 891, 912, 1163
BstF5I GGATG 5 cut(s) 332, 601, 703, 901, 941
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 3 cut(s) 234, 637, 941
BstMAI GTCTC 1 cut(s) 1133
BstMBI GATC 3 cut(s) 231, 634, 938
BstMWI GCNNNNNNNGC 2 cut(s) 554, 847
BstNI CCWGG 3 cut(s) 946, 951, 1082
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 3 cut(s) 944, 949, 1080
BstV1I GCAGC 1 cut(s) 849
Bsu36I CCTNAGG 1 cut(s) 891
BsuRI GGCC 4 cut(s) 421, 889, 949, 1116
BtgZI GCGATG 1 cut(s) 984
BtsCI GGATG 5 cut(s) 332, 601, 703, 901, 941
BtsIMutI CAGTG 3 cut(s) 297, 557, 1171
BveI ACCTGC 1 cut(s) 1057
Cac8I GCNNGC 1 cut(s) 1114
CciI TCATGA 1 cut(s) 91
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 3 cut(s) 57, 430, 577
Csp6I GTAC 1 cut(s) 449
CspCI CAANNNNNGTGG 2 cut(s) 972, 1007
CviAII CATG 4 cut(s) 92, 515, 761, 1174
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 7 cut(s) 9, 41, 363, 462, 891, 912, 1163
DpnI GATC 3 cut(s) 233, 636, 940
DpnII GATC 3 cut(s) 231, 634, 938
EaeI YGGCCR 1 cut(s) 1114
Eam1104I CTCTTC 2 cut(s) 831, 894
EarI CTCTTC 2 cut(s) 831, 894
Eco130I CCWWGG 1 cut(s) 337
Eco147I AGGCCT 3 cut(s) 421, 889, 949
Eco31I GGTCTC 1 cut(s) 1133
Eco47I GGWCC 3 cut(s) 57, 430, 577
Eco81I CCTNAGG 1 cut(s) 891
Eco88I CYCGRG 1 cut(s) 693
EcoO109I RGGNCCY 1 cut(s) 577
EcoRI GAATTC 1 cut(s) 623
EcoRII CCWGG 3 cut(s) 944, 949, 1080
EcoT14I CCWWGG 1 cut(s) 337
EcoT22I ATGCAT 1 cut(s) 678
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 4 cut(s) 95, 518, 764, 1177
FalI AAGNNNNNCTT 4 cut(s) 269, 301, 564, 596
FaqI GGGAC 1 cut(s) 416
FatI CATG 4 cut(s) 91, 514, 760, 1173
Fnu4HI GCNGC 2 cut(s) 6, 863
FokI GGATG 5 cut(s) 319, 588, 710, 908, 928
Fsp4HI GCNGC 2 cut(s) 6, 863
FspBI CTAG 5 cut(s) 108, 252, 257, 317, 531
GlaI GCGC 1 cut(s) 302
GluI GCNGC 2 cut(s) 6, 863
GsuI CTGGAG 3 cut(s) 206, 581, 725
HaeIII GGCC 4 cut(s) 421, 889, 949, 1116
HapII CCGG 1 cut(s) 428
HhaI GCGC 1 cut(s) 303
Hin1II CATG 4 cut(s) 95, 518, 764, 1177
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 876
HinfI GANTC 3 cut(s) 244, 527, 1007
HpaII CCGG 1 cut(s) 428
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 2 cut(s) 799, 971
Hpy188I TCNGA 3 cut(s) 283, 543, 1124
Hpy188III TCNNGA 8 cut(s) 92, 130, 271, 351, 524, 605, 695, 742
Hpy8I GTNNAC 2 cut(s) 799, 971
HpyAV CCTTC 5 cut(s) 444, 538, 697, 739, 852
HpyCH4III ACNGT 4 cut(s) 408, 796, 803, 968
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 9 cut(s) 26, 155, 173, 557, 587, 676, 780, 1052, 1151
HpyF10VI GCNNNNNNNGC 2 cut(s) 554, 847
HpyF3I CTNAG 7 cut(s) 9, 41, 363, 462, 891, 912, 1163
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 4 cut(s) 95, 518, 764, 1177
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 3 cut(s) 231, 634, 938
LguI GCTCTTC 2 cut(s) 831, 894
LmnI GCTCC 6 cut(s) 298, 502, 508, 643, 744, 994
Lsp1109I GCAGC 1 cut(s) 849
LweI GCATC 6 cut(s) 310, 312, 574, 610, 685, 754
MaeI CTAG 5 cut(s) 108, 252, 257, 317, 531
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 1184
MalI GATC 3 cut(s) 233, 636, 940
MboI GATC 3 cut(s) 231, 634, 938
MboII GAAGA 8 cut(s) 239, 274, 824, 842, 845, 848, 911, 1013
MlsI TGGCCA 1 cut(s) 1116
MluCI AATT 7 cut(s) 19, 80, 157, 469, 623, 725, 781
MluNI TGGCCA 1 cut(s) 1116
Mox20I TGGCCA 1 cut(s) 1116
Mph1103I ATGCAT 1 cut(s) 678
MroXI GAANNNNTTC 1 cut(s) 216
MscI TGGCCA 1 cut(s) 1116
MseI TTAA 2 cut(s) 120, 728
Msp20I TGGCCA 1 cut(s) 1116
MspA1I CMGCKG 1 cut(s) 911
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 3 cut(s) 946, 951, 1082
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 3 cut(s) 946, 951, 1082
MwoI GCNNNNNNNGC 2 cut(s) 554, 847
NdeII GATC 3 cut(s) 231, 634, 938
NlaIII CATG 4 cut(s) 95, 518, 764, 1177
NlaIV GGNNCC 3 cut(s) 432, 510, 996
NmuCI GTSAC 1 cut(s) 1184
NsiI ATGCAT 1 cut(s) 678
NspI RCATGY 1 cut(s) 518
NspV TTCGAA 1 cut(s) 856
PagI TCATGA 1 cut(s) 91
PaqCI CACCTGC 1 cut(s) 1057
PceI AGGCCT 3 cut(s) 421, 889, 949
PciI ACATGT 1 cut(s) 514
PciSI GCTCTTC 2 cut(s) 831, 894
PctI GAATGC 1 cut(s) 916
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 3 cut(s) 244, 527, 1007
PfoI TCCNGGA 1 cut(s) 1080
PkrI GCNGC 2 cut(s) 7, 864
PpuMI RGGWCCY 1 cut(s) 577
PscI ACATGT 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 577
Psp6I CCWGG 3 cut(s) 944, 949, 1080
PspGI CCWGG 3 cut(s) 944, 949, 1080
PspN4I GGNNCC 3 cut(s) 432, 510, 996
PspPI GGNCC 3 cut(s) 57, 430, 577
PspPPI RGGWCCY 1 cut(s) 577
PvuII CAGCTG 1 cut(s) 911
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
SapI GCTCTTC 2 cut(s) 831, 894
SaqAI TTAA 2 cut(s) 120, 728
SatI GCNGC 2 cut(s) 6, 863
Sau3AI GATC 3 cut(s) 231, 634, 938
Sau96I GGNCC 3 cut(s) 57, 430, 577
ScrFI CCNGG 3 cut(s) 946, 951, 1082
SfaNI GCATC 6 cut(s) 310, 312, 574, 610, 685, 754
SfuI TTCGAA 1 cut(s) 856
SinI GGWCC 3 cut(s) 57, 430, 577
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
Sse9I AATT 7 cut(s) 19, 80, 157, 469, 623, 725, 781
SseBI AGGCCT 3 cut(s) 421, 889, 949
SsiI CCGC 2 cut(s) 342, 865
SspI AATATT 1 cut(s) 67
SspMI CTAG 5 cut(s) 108, 252, 257, 317, 531
StuI AGGCCT 3 cut(s) 421, 889, 949
StyD4I CCNGG 3 cut(s) 944, 949, 1080
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 4 cut(s) 408, 796, 803, 968
TaiI ACGT 1 cut(s) 139
TaqI TCGA 2 cut(s) 234, 856
TasI AATT 7 cut(s) 19, 80, 157, 469, 623, 725, 781
TfiI GAWTC 3 cut(s) 244, 527, 1007
Tru1I TTAA 2 cut(s) 120, 728
Tru9I TTAA 2 cut(s) 120, 728
TscAI CASTG 3 cut(s) 297, 564, 1171
TseFI GTSAC 1 cut(s) 1184
TseI GCWGC 2 cut(s) 5, 862
Tsp45I GTSAC 1 cut(s) 1184
TspDTI ATGAA 3 cut(s) 209, 212, 912
TspRI CASTG 3 cut(s) 297, 564, 1171
VpaK11BI GGWCC 3 cut(s) 57, 430, 577
XapI RAATTY 2 cut(s) 157, 623
XceI RCATGY 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 5 cut(s) 108, 252, 257, 317, 531
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.