AT5G63680

Belongs to the pyruvate kinase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
25490065 .. 25492763
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63680.2

Sequence Viewer

Length: 1533 bp
ATGTCGAACATAGACATAGAAGGAATATTGAAGGAGCTACCTAATGATGGGAGGACTCCTAAGACTAAGATCGTTTGTACATTAGGTCCTGCGTCTAGGTCTGTGACAATGATTGAGAAGCTTCTTAAAGCAGGCATGAATGTAGCTCGATTCAATTTCTCTCACGGAAGCCATGAGTACCATCAGGAGACTCTTGACAATCTCCGCACCGCTATGCAGAATACCGGCATTCTCGCTGCTGTTATGCTTGATACAAAGGGGCCTGAGATTCGTACCGGTTTCTTGAAAGATGGGAACCCTATACAACTAAAGGAAGGCCAAGAGATCACAATTACCACTGATTATGACATCAAGGGCGATGAGAAAACGATTTCCATGAGCTACAAAAAGCTCCCAGTGGATGTGAAGCCCGGAAATACCATACTATGTGCAGATGGAAGCATAAGTCTTGCTGTCGTGTCATGTGATCCAAACGCTGGGACTGTTATATGTCGATGTGAAAATACAGCCATGCTAGGTGAAAGAAAAAATGTGAATCTCCCAGGTGTTGTTGTTGATCTCCCCACATTGACTGACAAGGATGTAGAAGATATTCTTAAATGGGGTGTTCCAAACAACATCGATATGATTGCTCTTTCATTTGTTCGCAAAGGTTCAGATCTTGTTAATGTCCGGAAAGTCCTTGGATCACATTCCAAGAGTATAATGTTGATGTCGAAGGTTGAGAACCAAGAAGGAGTCCTGAATTTCGATGAGATTTTGCGTGAAACTGATGCATTCATGGTTGCTCGTGGTGATCTTGGGATGGAGATTCCGATAGAGAAGATCTTCTTGGCTCAGAAGATGATGATCTACAAGTGTAACCTTGCAGGTAAACCGGTGGTCACAGCCACTCAAATGCTCGAGTCGATGATCAAATCACCACGGCCAACACGAGCAGAAGCCACAGATGTAGCAAACGCAGTTCTCGATGGCACTGACTGTGTGATGCTTAGCGGAGAAAGTGCTGCAGGAGCTTACCCTGAAATAGCAGTGAAAACAATGGCTAAAATCTGCATCGAGGCGGAATCATCGCTTGACTACAACACAATCTTCAAGGAGATGATTAGAGCAACTCCACTTCCAATGAGCACTCTTGAGAGTCTTGCATCATCAGCTGTACGAACGGCAAACAAAGCCAAAGCCAAACTCATCATCGTGTTGACCAGAGGAGGTACAACAGCTAAACTGGTGGCCAAGTATAGACCGGCTGTTCCAATTCTATCGGTGGTTGTTCCGGTCTTCACCAGCGATACGTTTAACTGGAGTTGCAGCGATGAGTCACCGGCGAGGCATAGTTTGATATATAGAGGTCTGATACCGGTTTTGGGTGAAGGATCTGCAAAAGCAACTGATAGTGAATCCACAGAGGAGATTATTGAATCTGCTTTGAAGTCAGCGACAGAGAAAGGACTGTGTAACCATGGTGATGCTGTGGTGGCTCTGCACCGTATTGGAGCTGCTTCGGTTATCAAGATCTGTGTGGTGAAGTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

510

Amino Acids

55.02

Weight (kDa)

6.24

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK PF00224 20 - 345 6.1e-150 Pyruvate kinase, barrel domain
PK_C PF02887 380 - 499 2.1e-23 Pyruvate kinase, alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009829)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 860
AccB7I CCANNNNNTGG 1 cut(s) 476
AccIII TCCGGA 1 cut(s) 672
AciI CCGC 4 cut(s) 205, 210, 996, 1064
AclWI GGATC 3 cut(s) 461, 694, 1384
AcoI YGGCCR 2 cut(s) 926, 1233
AcsI RAATTY 1 cut(s) 745
AfaI GTAC 5 cut(s) 79, 179, 274, 1161, 1216
AfiI CCNNNNNNNGG 3 cut(s) 47, 476, 1367
AgeI ACCGGT 3 cut(s) 275, 877, 1360
AgsI TTSAA 6 cut(s) 31, 154, 286, 1096, 1421, 1432
AjnI CCWGG 1 cut(s) 541
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AluBI AGCT 9 cut(s) 37, 121, 146, 381, 391, 1016, 1157, 1223, 1499
AluI AGCT 9 cut(s) 37, 121, 146, 381, 391, 1016, 1157, 1223, 1499
Alw21I GWGCWC 1 cut(s) 1133
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 3 cut(s) 461, 694, 1384
Ama87I CYCGRG 1 cut(s) 902
Aor13HI TCCGGA 1 cut(s) 672
AoxI GGCC 4 cut(s) 260, 316, 926, 1233
ApeKI GCWGC 4 cut(s) 236, 1007, 1311, 1499
ApoI RAATTY 1 cut(s) 745
AsiGI ACCGGT 3 cut(s) 275, 877, 1360
Asp700I GAANNNNTTC 2 cut(s) 591, 827
AspS9I GGNCC 2 cut(s) 86, 260
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 7 cut(s) 530, 806, 912, 1276, 1314, 1382, 1478
AvaI CYCGRG 1 cut(s) 902
AvaII GGWCC 1 cut(s) 86
BalI TGGCCA 1 cut(s) 1235
BauI CACGAG 2 cut(s) 789, 933
BbsI GAAGAC 1 cut(s) 1273
Bbv12I GWGCWC 1 cut(s) 1133
BbvI GCAGC 4 cut(s) 223, 994, 1323, 1486
BccI CCATC 6 cut(s) 41, 189, 284, 428, 799, 965
BceAI ACGGC 2 cut(s) 941, 1182
BcgI CGANNNNNNTGC 2 cut(s) 611, 645
BciT130I CCWGG 1 cut(s) 543
BclI TGATCA 1 cut(s) 912
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 2 cut(s) 96, 515
BfmI CTRYAG 1 cut(s) 1008
BfuAI ACCTGC 1 cut(s) 860
BglII AGATCT 3 cut(s) 658, 825, 1515
BisI GCNGC 4 cut(s) 237, 1008, 1312, 1500
BlpI GCTNAGC 1 cut(s) 992
BlsI GCNGC 4 cut(s) 238, 1009, 1313, 1501
Bme1390I CCNGG 2 cut(s) 411, 543
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 902
BmgT120I GGNCC 2 cut(s) 86, 260
BmiI GGNNCC 2 cut(s) 261, 296
BmrFI CCNGG 2 cut(s) 411, 543
BmrI ACTGGG 1 cut(s) 389
BmsI GCATC 5 cut(s) 763, 978, 1065, 1157, 1459
BmuI ACTGGG 1 cut(s) 389
BpiI GAAGAC 1 cut(s) 1273
BpmI CTGGAG 1 cut(s) 1324
Bpu1102I GCTNAGC 1 cut(s) 992
BpuEI CTTGAG 1 cut(s) 1157
BpuMI CCSGG 1 cut(s) 411
Bsa29I ATCGAT 1 cut(s) 621
BsaBI GATNNNNATC 1 cut(s) 848
BsaJI CCNNGG 4 cut(s) 541, 682, 923, 1462
BsaWI WCCGGW 5 cut(s) 275, 672, 877, 1276, 1360
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 476, 1367
Bse118I RCCGGY 6 cut(s) 224, 275, 877, 1246, 1324, 1360
Bse1I ACTGG 3 cut(s) 395, 1233, 1307
Bse8I GATNNNNATC 1 cut(s) 848
BseAI TCCGGA 1 cut(s) 672
BseBI CCWGG 1 cut(s) 543
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 4 cut(s) 541, 682, 923, 1462
BseGI GGATG 3 cut(s) 406, 586, 810
BseJI GATNNNNATC 1 cut(s) 848
BseLI CCNNNNNNNGG 3 cut(s) 47, 476, 1367
BseMII CTCAG 2 cut(s) 255, 851
BseNI ACTGG 3 cut(s) 395, 1233, 1307
BseRI GAGGAG 2 cut(s) 1224, 1424
BseXI GCAGC 4 cut(s) 223, 994, 1323, 1486
BseYI CCCAGC 1 cut(s) 476
BsgI GTGCAG 2 cut(s) 450, 1469
BshFI GGCC 4 cut(s) 262, 318, 928, 1235
BshTI ACCGGT 3 cut(s) 275, 877, 1360
BshVI ATCGAT 1 cut(s) 621
BsiHKAI GWGCWC 1 cut(s) 1133
BsiHKCI CYCGRG 1 cut(s) 902
BsiSI CCGG 9 cut(s) 225, 276, 411, 673, 878, 1247, 1277, 1325, 1361
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 3 cut(s) 47, 476, 1367
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 493
BsmI GAATGC 2 cut(s) 228, 776
BsnI GGCC 4 cut(s) 262, 318, 928, 1235
BsoBI CYCGRG 1 cut(s) 902
Bsp1286I GDGCHC 1 cut(s) 1133
Bsp13I TCCGGA 1 cut(s) 672
Bsp1407I TGTACA 1 cut(s) 77
Bsp1720I GCTNAGC 1 cut(s) 992
Bsp19I CCATGG 1 cut(s) 1462
BspACI CCGC 4 cut(s) 205, 210, 996, 1064
BspANI GGCC 4 cut(s) 262, 318, 928, 1235
BspCNI CTCAG 2 cut(s) 256, 850
BspDI ATCGAT 1 cut(s) 621
BspEI TCCGGA 1 cut(s) 672
BspLI GGNNCC 2 cut(s) 261, 296
BspMAI CTGCAG 1 cut(s) 1012
BspMI ACCTGC 1 cut(s) 860
BspPI GGATC 3 cut(s) 461, 694, 1384
BsrFI RCCGGY 6 cut(s) 224, 275, 877, 1246, 1324, 1360
BsrGI TGTACA 1 cut(s) 77
BsrI ACTGG 3 cut(s) 395, 1233, 1307
BssAI RCCGGY 6 cut(s) 224, 275, 877, 1246, 1324, 1360
BssECI CCNNGG 4 cut(s) 541, 682, 923, 1462
BssSI CACGAG 2 cut(s) 789, 933
BssT1I CCWWGG 2 cut(s) 682, 1462
Bst2BI CACGAG 2 cut(s) 789, 933
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 4 cut(s) 484, 983, 1455, 1490
BstAUI TGTACA 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 5 cut(s) 60, 66, 264, 837, 992
BstDSI CCRYGG 2 cut(s) 923, 1462
BstF5I GGATG 3 cut(s) 406, 586, 810
BstMAI GTCTC 1 cut(s) 182
BstMWI GCNNNNNNNGC 4 cut(s) 1013, 1154, 1175, 1478
BstNI CCWGG 1 cut(s) 543
BstSCI CCNGG 2 cut(s) 409, 541
BstSFI CTRYAG 1 cut(s) 1008
BstV1I GCAGC 4 cut(s) 223, 994, 1323, 1486
BstV2I GAAGAC 1 cut(s) 1273
BstX2I RGATCY 4 cut(s) 658, 825, 1376, 1515
BstYI RGATCY 4 cut(s) 658, 825, 1376, 1515
Bsu15I ATCGAT 1 cut(s) 621
BsuRI GGCC 4 cut(s) 262, 318, 928, 1235
BsuTUI ATCGAT 1 cut(s) 621
BtgI CCRYGG 2 cut(s) 923, 1462
BtgZI GCGATG 3 cut(s) 372, 1056, 1329
BtsCI GGATG 3 cut(s) 406, 586, 810
BtsI GCAGTG 1 cut(s) 1038
BtsIMutI CAGTG 4 cut(s) 336, 402, 975, 1038
BveI ACCTGC 1 cut(s) 860
Cac8I GCNNGC 1 cut(s) 133
Cfr10I RCCGGY 6 cut(s) 224, 275, 877, 1246, 1324, 1360
Cfr13I GGNCC 2 cut(s) 86, 260
ClaI ATCGAT 1 cut(s) 621
CseI GACGC 1 cut(s) 81
Csp6I GTAC 5 cut(s) 78, 178, 273, 1160, 1215
CspAI ACCGGT 3 cut(s) 275, 877, 1360
CviAII CATG 7 cut(s) 136, 173, 376, 462, 511, 781, 1463
CviQI GTAC 5 cut(s) 78, 178, 273, 1160, 1215
DdeI CTNAG 5 cut(s) 60, 66, 264, 837, 992
EaeI YGGCCR 2 cut(s) 926, 1233
EciI GGCGGA 1 cut(s) 1079
Eco130I CCWWGG 2 cut(s) 682, 1462
Eco47I GGWCC 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 902
EcoO109I RGGNCCY 2 cut(s) 86, 260
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 682, 1462
EcoT22I ATGCAT 1 cut(s) 778
ErhI CCWWGG 2 cut(s) 682, 1462
FaeI CATG 7 cut(s) 139, 176, 379, 465, 514, 784, 1466
FalI AAGNNNNNCTT 4 cut(s) 579, 611, 815, 847
FaqI GGGAC 1 cut(s) 493
FatI CATG 7 cut(s) 135, 172, 375, 461, 510, 780, 1462
FbaI TGATCA 1 cut(s) 912
Fnu4HI GCNGC 4 cut(s) 237, 1008, 1312, 1500
FokI GGATG 3 cut(s) 413, 593, 817
Fsp4HI GCNGC 4 cut(s) 237, 1008, 1312, 1500
FspBI CTAG 2 cut(s) 96, 515
GluI GCNGC 4 cut(s) 237, 1008, 1312, 1500
GsaI CCCAGC 1 cut(s) 480
GsuI CTGGAG 1 cut(s) 1324
HaeIII GGCC 4 cut(s) 262, 318, 928, 1235
HapII CCGG 9 cut(s) 225, 276, 411, 673, 878, 1247, 1277, 1325, 1361
HgaI GACGC 1 cut(s) 81
Hin1II CATG 7 cut(s) 139, 176, 379, 465, 514, 784, 1466
HincII GTYRAC 1 cut(s) 1203
HindII GTYRAC 1 cut(s) 1203
HindIII AAGCTT 1 cut(s) 119
HpaII CCGG 9 cut(s) 225, 276, 411, 673, 878, 1247, 1277, 1325, 1361
HphI GGTGA 7 cut(s) 530, 806, 912, 1276, 1314, 1382, 1478
Hpy166II GTNNAC 2 cut(s) 875, 1203
Hpy188I TCNGA 4 cut(s) 658, 816, 840, 1356
Hpy188III TCNNGA 8 cut(s) 185, 194, 283, 673, 742, 968, 1136, 1513
Hpy8I GTNNAC 2 cut(s) 875, 1203
HpyAV CCTTC 6 cut(s) 14, 25, 308, 712, 728, 1367
HpyCH4III ACNGT 4 cut(s) 484, 983, 1455, 1490
HpyCH4IV ACGT 1 cut(s) 1295
HpyF10VI GCNNNNNNNGC 4 cut(s) 1013, 1154, 1175, 1478
HpyF3I CTNAG 5 cut(s) 60, 66, 264, 837, 992
HpySE526I ACGT 1 cut(s) 1295
Hsp92II CATG 7 cut(s) 139, 176, 379, 465, 514, 784, 1466
Kpn2I TCCGGA 1 cut(s) 672
Ksp22I TGATCA 1 cut(s) 912
LmnI GCTCC 4 cut(s) 34, 396, 1013, 1496
Lsp1109I GCAGC 4 cut(s) 223, 994, 1323, 1486
LweI GCATC 5 cut(s) 763, 978, 1065, 1157, 1459
MaeI CTAG 2 cut(s) 96, 515
MaeII ACGT 1 cut(s) 1295
MaeIII GTNAC 5 cut(s) 103, 860, 883, 1320, 1457
MboII GAAGA 6 cut(s) 599, 820, 835, 853, 1084, 1273
MflI RGATCY 4 cut(s) 658, 825, 1376, 1515
MhlI GDGCHC 1 cut(s) 1133
MlsI TGGCCA 1 cut(s) 1235
MluCI AATT 4 cut(s) 154, 330, 745, 1257
MluNI TGGCCA 1 cut(s) 1235
MlyI GAGTC 6 cut(s) 49, 184, 747, 914, 1150, 1328
MnlI CCTC 7 cut(s) 45, 1054, 1202, 1205, 1323, 1343, 1402
Mox20I TGGCCA 1 cut(s) 1235
Mph1103I ATGCAT 1 cut(s) 778
MroI TCCGGA 1 cut(s) 672
MroXI GAANNNNTTC 2 cut(s) 591, 827
MscI TGGCCA 1 cut(s) 1235
MseI TTAA 4 cut(s) 126, 597, 666, 1299
MslI CAYNNNNRTG 5 cut(s) 212, 623, 896, 1196, 1467
Msp20I TGGCCA 1 cut(s) 1235
MspA1I CMGCKG 1 cut(s) 1157
MspI CCGG 9 cut(s) 225, 276, 411, 673, 878, 1247, 1277, 1325, 1361
MspR9I CCNGG 2 cut(s) 411, 543
Mva1269I GAATGC 2 cut(s) 228, 776
MvaI CCWGG 1 cut(s) 543
MwoI GCNNNNNNNGC 4 cut(s) 1013, 1154, 1175, 1478
NciI CCSGG 1 cut(s) 411
NcoI CCATGG 1 cut(s) 1462
NlaIII CATG 7 cut(s) 139, 176, 379, 465, 514, 784, 1466
NlaIV GGNNCC 2 cut(s) 261, 296
NmuCI GTSAC 3 cut(s) 103, 883, 1320
NsiI ATGCAT 1 cut(s) 778
PaeR7I CTCGAG 1 cut(s) 902
PcsI WCGNNNNNNNCGW 2 cut(s) 931, 966
PctI GAATGC 2 cut(s) 228, 776
PdmI GAANNNNTTC 2 cut(s) 591, 827
PfeI GAWTC 7 cut(s) 150, 268, 535, 811, 1067, 1400, 1421
PflMI CCANNNNNTGG 1 cut(s) 476
PinAI ACCGGT 3 cut(s) 275, 877, 1360
PkrI GCNGC 4 cut(s) 238, 1009, 1313, 1501
PleI GAGTC 6 cut(s) 49, 184, 746, 913, 1149, 1327
PpsI GAGTC 6 cut(s) 49, 184, 746, 913, 1149, 1327
PpuMI RGGWCCY 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 541
PspFI CCCAGC 1 cut(s) 476
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 2 cut(s) 261, 296
PspPI GGNCC 2 cut(s) 86, 260
PspPPI RGGWCCY 1 cut(s) 86
PspXI VCTCGAGB 1 cut(s) 902
PstI CTGCAG 1 cut(s) 1012
PsuI RGATCY 4 cut(s) 658, 825, 1376, 1515
PvuII CAGCTG 1 cut(s) 1157
RsaI GTAC 5 cut(s) 79, 179, 274, 1161, 1216
RsaNI GTAC 5 cut(s) 78, 178, 273, 1160, 1215
RseI CAYNNNNRTG 5 cut(s) 212, 623, 896, 1196, 1467
SaqAI TTAA 4 cut(s) 126, 597, 666, 1299
SatI GCNGC 4 cut(s) 237, 1008, 1312, 1500
Sau96I GGNCC 2 cut(s) 86, 260
SchI GAGTC 6 cut(s) 49, 184, 747, 914, 1150, 1328
ScrFI CCNGG 2 cut(s) 411, 543
SduI GDGCHC 1 cut(s) 1133
SfaNI GCATC 5 cut(s) 763, 978, 1065, 1157, 1459
SfcI CTRYAG 1 cut(s) 1008
Sfr274I CTCGAG 1 cut(s) 902
SgrAI CRCCGGYG 1 cut(s) 1324
SinI GGWCC 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 902
SmiMI CAYNNNNRTG 5 cut(s) 212, 623, 896, 1196, 1467
SmlI CTYRAG 2 cut(s) 902, 1136
SmoI CTYRAG 2 cut(s) 902, 1136
Sse9I AATT 4 cut(s) 154, 330, 745, 1257
SsiI CCGC 4 cut(s) 205, 210, 996, 1064
SspI AATATT 1 cut(s) 27
SspMI CTAG 2 cut(s) 96, 515
StyD4I CCNGG 2 cut(s) 409, 541
StyI CCWWGG 2 cut(s) 682, 1462
TaaI ACNGT 4 cut(s) 484, 983, 1455, 1490
TaiI ACGT 1 cut(s) 1298
TasI AATT 4 cut(s) 154, 330, 745, 1257
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 7 cut(s) 150, 268, 535, 811, 1067, 1400, 1421
Tru1I TTAA 4 cut(s) 126, 597, 666, 1299
Tru9I TTAA 4 cut(s) 126, 597, 666, 1299
TscAI CASTG 4 cut(s) 343, 402, 982, 1038
TseFI GTSAC 3 cut(s) 103, 883, 1320
TseI GCWGC 4 cut(s) 236, 1007, 1311, 1499
Tsp45I GTSAC 3 cut(s) 103, 883, 1320
TspDTI ATGAA 3 cut(s) 152, 627, 769
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 4 cut(s) 343, 402, 982, 1038
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 745
XhoI CTCGAG 1 cut(s) 902
XmnI GAANNNNTTC 2 cut(s) 591, 827
XspI CTAG 2 cut(s) 96, 515
Zsp2I ATGCAT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.