AT5G64010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010130
Physical Location & Seq
Reverse (-)
25618606 .. 25620223
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64010.1

Sequence Viewer

Length: 711 bp
ATGGCGAGTTTCGAGAAATTCGAACCCATATTTGGAGAAGTCGTACCCGAACGTTCGGATCCGGGTTCGGGTCTACTCCGGCGATGTCTCTTCCACGTCTACGCTTCCGATTCGTATAACTTAACAGTTCATGTCACTGACTTCATCTCCGGTGTCTGGACGACGATCCTCTCCGTCTCGCAGCTAGACGATATGAGGGATACTGTTGGGATTGGTGGTTCGTGGTCTGAGTTCGTCGATTATACTGTTGCTTCCTTGAAATCCGACAATGTGAAGCTTCTCTTGGGAGAAACTTCAGTTTCAAATGGTGTCAAAACTGCGCGATTAGTTTCTCAGAAAGCCAAAGGAATGCCTCGCATAAATGTTCCTTTAACAAAGATGGTGGAATCATCTGCTAGTGAAGCAATGGCAAATCTGTCTCTCGAGTTGTTCAGAGCATTCAAGAGCAAGCAGCACCTACAAGGAGAAGTGAGTTTTTCAGCTGCAGCAACTGATGAAAAGGATAAGAGGGATGCTACCTATAACCAACTGGAACGATACTCTAGAAAGCTAGATGTTATGGCTCCATCAACAAATAACCGGCAAGACTCTCCCGCCAACCAATCTGCCCGAGAAGCTAACACAAAAAACCCTGTGAAACGAGTACCTGCTCACCGAAGAACCCGTAAACGGGGTGCTCTTCTGCAGGATTCAGAAGAAGAGGATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.16

Weight (kDa)

7.82

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 655
AccI GTMKAC 2 cut(s) 73, 99
AccII CGCG 1 cut(s) 322
AciI CCGC 1 cut(s) 594
AclI AACGTT 1 cut(s) 52
AclWI GGATC 3 cut(s) 53, 66, 160
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 2 cut(s) 45, 645
AfiI CCNNNNNNNGG 5 cut(s) 32, 68, 156, 669, 670
AgsI TTSAA 3 cut(s) 259, 303, 442
AjiI CACGTC 1 cut(s) 97
AjuI GAANNNNNNNTTGG 4 cut(s) 15, 47, 266, 298
AloI GAACNNNNNNTCC 2 cut(s) 202, 234
AluBI AGCT 5 cut(s) 184, 277, 482, 550, 617
AluI AGCT 5 cut(s) 184, 277, 482, 550, 617
Alw21I GWGCWC 1 cut(s) 679
Alw26I GTCTC 3 cut(s) 92, 181, 423
AlwI GGATC 3 cut(s) 53, 66, 160
AlwNI CAGNNNCTG 1 cut(s) 491
Ama87I CYCGRG 2 cut(s) 422, 609
ApeKI GCWGC 4 cut(s) 181, 451, 482, 485
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 1 cut(s) 322
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 644
AsuII TTCGAA 1 cut(s) 21
AvaI CYCGRG 2 cut(s) 422, 609
BamHI GGATCC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 679
BbvI GCAGC 4 cut(s) 193, 463, 469, 497
BccI CCATC 3 cut(s) 373, 574, 698
BciVI GTATCC 1 cut(s) 193
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 3 cut(s) 92, 181, 423
BfaI CTAG 4 cut(s) 185, 396, 543, 551
BfmI CTRYAG 2 cut(s) 483, 683
BfuAI ACCTGC 1 cut(s) 655
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 4 cut(s) 182, 452, 483, 486
BlsI GCNGC 4 cut(s) 183, 453, 484, 487
Bme1390I CCNGG 1 cut(s) 63
BmeT110I CYCGRG 2 cut(s) 422, 609
BmgBI CACGTC 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 60, 564
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 502
Bpu14I TTCGAA 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 131, 161
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 68, 156, 669, 670
Bse118I RCCGGY 1 cut(s) 579
Bse1I ACTGG 1 cut(s) 534
Bse3DI GCAATG 1 cut(s) 411
BseGI GGATG 2 cut(s) 517, 709
BseLI CCNNNNNNNGG 5 cut(s) 32, 68, 156, 669, 670
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 2 cut(s) 219, 347
BseNI ACTGG 1 cut(s) 534
BseXI GCAGC 4 cut(s) 193, 463, 469, 497
Bsh1236I CGCG 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 679
BsiHKCI CYCGRG 2 cut(s) 422, 609
BsiSI CCGG 4 cut(s) 62, 79, 150, 580
BslI CCNNNNNNNGG 5 cut(s) 32, 68, 156, 669, 670
BsmAI GTCTC 3 cut(s) 92, 181, 423
BsmBI CGTCTC 1 cut(s) 181
BsmI GAATGC 2 cut(s) 354, 437
BsoBI CYCGRG 2 cut(s) 422, 609
Bsp119I TTCGAA 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 679
Bsp143I GATC 2 cut(s) 58, 165
BspACI CCGC 1 cut(s) 594
BspCNI CTCAG 2 cut(s) 220, 346
BspFNI CGCG 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 60, 564
BspMAI CTGCAG 2 cut(s) 487, 687
BspMI ACCTGC 1 cut(s) 655
BspPI GGATC 3 cut(s) 53, 66, 160
BspQI GCTCTTC 1 cut(s) 684
BspT104I TTCGAA 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 411
BsrFI RCCGGY 1 cut(s) 579
BsrI ACTGG 1 cut(s) 534
BssAI RCCGGY 1 cut(s) 579
BssMI GATC 2 cut(s) 58, 165
Bst4CI ACNGT 3 cut(s) 127, 205, 247
Bst6I CTCTTC 3 cut(s) 95, 684, 693
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 2 cut(s) 228, 333
BstF5I GGATG 2 cut(s) 517, 709
BstFNI CGCG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 2 cut(s) 61, 168
BstMAI GTCTC 3 cut(s) 92, 181, 423
BstMBI GATC 2 cut(s) 58, 165
BstMWI GCNNNNNNNGC 2 cut(s) 401, 614
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 2 cut(s) 483, 683
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 4 cut(s) 193, 463, 469, 497
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuI GTATCC 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 97
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 517, 709
BtsIMutI CAGTG 1 cut(s) 135
BveI ACCTGC 1 cut(s) 655
Cac8I GCNNGC 1 cut(s) 449
CaiI CAGNNNCTG 1 cut(s) 491
CfoI GCGC 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 579
Csp6I GTAC 2 cut(s) 44, 644
CspCI CAANNNNNGTGG 2 cut(s) 363, 398
CviAII CATG 1 cut(s) 131
CviJI RGCY 8 cut(s) 184, 277, 341, 482, 550, 563, 617, 708
CviKI_1 RGCY 8 cut(s) 184, 277, 341, 482, 550, 563, 617, 708
CviQI GTAC 2 cut(s) 44, 644
DdeI CTNAG 2 cut(s) 228, 333
DpnI GATC 2 cut(s) 60, 167
DpnII GATC 2 cut(s) 58, 165
Eam1104I CTCTTC 3 cut(s) 95, 684, 693
EarI CTCTTC 3 cut(s) 95, 684, 693
Eco57I CTGAAG 1 cut(s) 279
Eco88I CYCGRG 2 cut(s) 422, 609
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 1 cut(s) 134
FaiI YATR 8 cut(s) 29, 117, 132, 194, 243, 359, 522, 560
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 1 cut(s) 130
FauI CCCGC 1 cut(s) 601
FblI GTMKAC 2 cut(s) 73, 99
Fnu4HI GCNGC 4 cut(s) 182, 452, 483, 486
FokI GGATG 1 cut(s) 524
Fsp4HI GCNGC 4 cut(s) 182, 452, 483, 486
FspBI CTAG 4 cut(s) 185, 396, 543, 551
GlaI GCGC 1 cut(s) 321
GluI GCNGC 4 cut(s) 182, 452, 483, 486
HapII CCGG 4 cut(s) 62, 79, 150, 580
HhaI GCGC 1 cut(s) 322
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 4 cut(s) 110, 386, 587, 689
HpaII CCGG 4 cut(s) 62, 79, 150, 580
HphI GGTGA 1 cut(s) 644
Hpy166II GTNNAC 3 cut(s) 74, 100, 668
Hpy188I TCNGA 7 cut(s) 58, 109, 229, 265, 336, 434, 694
Hpy188III TCNNGA 5 cut(s) 13, 157, 422, 442, 543
Hpy8I GTNNAC 3 cut(s) 74, 100, 668
Hpy99I CGWCG 2 cut(s) 166, 239
HpyCH4III ACNGT 3 cut(s) 127, 205, 247
HpyCH4IV ACGT 2 cut(s) 52, 96
HpyCH4V TGCA 2 cut(s) 485, 685
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 614
HpyF3I CTNAG 2 cut(s) 228, 333
HpySE526I ACGT 2 cut(s) 52, 96
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 58, 165
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 1 cut(s) 568
LpnPI CCDG 9 cut(s) 75, 92, 142, 163, 515, 593, 645, 660, 671
Lsp1109I GCAGC 4 cut(s) 193, 463, 469, 497
LweI GCATC 1 cut(s) 502
MaeI CTAG 4 cut(s) 185, 396, 543, 551
MaeII ACGT 2 cut(s) 52, 96
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 60, 167
MboI GATC 2 cut(s) 58, 165
MboII GAAGA 5 cut(s) 82, 669, 671, 707, 710
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 679
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 5 cut(s) 179, 189, 363, 501, 694
MseI TTAA 2 cut(s) 122, 371
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 4 cut(s) 62, 79, 150, 580
MspR9I CCNGG 1 cut(s) 63
Mva1269I GAATGC 2 cut(s) 354, 437
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 401, 614
NciI CCSGG 1 cut(s) 63
NdeII GATC 2 cut(s) 58, 165
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 2 cut(s) 60, 564
NmuCI GTSAC 1 cut(s) 133
NspV TTCGAA 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 422
PciSI GCTCTTC 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 2 cut(s) 354, 437
PfeI GAWTC 3 cut(s) 110, 386, 689
PkrI GCNGC 4 cut(s) 183, 453, 484, 487
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
Psp1406I AACGTT 1 cut(s) 52
PspN4I GGNNCC 2 cut(s) 60, 564
PstI CTGCAG 2 cut(s) 487, 687
PstNI CAGNNNCTG 1 cut(s) 491
PsuI RGATCY 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 2 cut(s) 45, 645
RsaNI GTAC 2 cut(s) 44, 644
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 2 cut(s) 122, 371
SatI GCNGC 4 cut(s) 182, 452, 483, 486
Sau3AI GATC 2 cut(s) 58, 165
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 679
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 2 cut(s) 483, 683
Sfr274I CTCGAG 1 cut(s) 422
SfuI TTCGAA 1 cut(s) 21
SlaI CTCGAG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 1 cut(s) 17
SsiI CCGC 1 cut(s) 594
SspMI CTAG 4 cut(s) 185, 396, 543, 551
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 3 cut(s) 127, 205, 247
TaiI ACGT 2 cut(s) 55, 99
TaqI TCGA 4 cut(s) 12, 21, 237, 423
TasI AATT 1 cut(s) 17
TfiI GAWTC 3 cut(s) 110, 386, 689
Tru1I TTAA 2 cut(s) 122, 371
Tru9I TTAA 2 cut(s) 122, 371
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 4 cut(s) 181, 451, 482, 485
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 119, 133, 510
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 142
XapI RAATTY 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 542
XhoI CTCGAG 1 cut(s) 422
XmiI GTMKAC 2 cut(s) 73, 99
XspI CTAG 4 cut(s) 185, 396, 543, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.