Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010130

Physical Location & Seq

Genomic Coordinates Reverse (-)

22536365 .. 22540781

Gene Structure 4417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G273000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGGTTCGAGGTACATTTGAAGCCTATCTTCGGCCACCCCAAGGTCGAGTGGGCGTCTGGTAACGCTTCTACTCCGCCGCGTCGGTTCTTGTTCCACGTCCACGCCTCCCCTGATTCTCTGCACCTCATAATCCATGTCACTGATTTCCACTGCGACACCTGGGAGGCCGTACGGTCGGTTTCCCAGCTTGACGACATGAGGGACAGCATAGGAATAGGAGGCTCCTGGTCAGACTTCATAGACTATCTCATAGCTTCCATAAAATCCGAAGATGTAAAGCTTGTTTTGGAGGGACATTCAAACTCCGACGGTGCTGCATATGCAAAACTAGTGGCTCAAAAATCAAAAGGAATGCCTGTAATTTCCATTTCTCTTACAAAACTTGTGGGGACTGCTGGTAGTGAGGCTATTGCAAATCTATCTCTTCAGCTCTTCGAAGAATTCAAAAGCATCCATGAGTTTTATGTGGAAGAAAAACAGCATTCTATTGAATTGTCAAAAGTGATATCAGCTGAAAAGGAAAGAAATGCTAGTATCCAGAGCCAACTGGAGCAGTATTCCAAGAGGCAAAAGTTACAGAGGATTAGTTCCTCAGATAAAGTAGATGTTTCTGGACCATTCAGTAATGGTTTGAAAAGCTCTCCAGATAAAGAAGCAGCTCGAGATATAAACTCAACAACAGTTGCCAATCGGGTTGTGCCTGCATATCGTAGGGCAAAAGTAAGAGGTGCCCTTCTGCAGGATATAGAAGAGGAACACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.3

Weight (kDa)

6.42

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64010
fragaria_vesca	FvH4_4g13030 FvH4_4g13030 FvH4_4g13030
malus_domestica	MD17G1201700.v1.1
prunus_persica	Prupe.4G273000_v2.0.a1 Prupe.4G273000_v2.0.a1
pyrus_communis	pycom17g20560
rosa_chinensis	RchiOBHm_Chr4g0412711 RchiOBHm_Chr4g0412751
rosa_laevigata	RLG00000008261 RLG00000008263
rosa_multiflora	Rmu_sc0001238.1_g000037
rosa_roxburghii	Rroxscaffold_5G00356970
rosa_rugosa	Rorug04G0116000 Rorug04G0116400
rosa_samantha	Rh4AG175000 Rh4BG174900 Rh4CG186300 Rh4DG172000
rosa_wichuraiana	Rw0G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	731
AccII	CGCG	1 cut(s)	82
AciI	CCGC	2 cut(s)	77, 80
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	15, 174
AfiI	CCNNNNNNNGG	3 cut(s)	32, 43, 742
AgsI	TTSAA	5 cut(s)	22, 303, 448, 494, 637
AhlI	ACTAGT	1 cut(s)	331
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	161, 227
AluBI	AGCT	7 cut(s)	190, 257, 283, 433, 515, 642, 662
AluI	AGCT	7 cut(s)	190, 257, 283, 433, 515, 642, 662
Ama87I	CYCGRG	1 cut(s)	663
AoxI	GGCC	2 cut(s)	34, 168
ApeKI	GCWGC	2 cut(s)	317, 659
ApoI	RAATTY	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	617
AsuII	TTCGAA	1 cut(s)	438
AvaI	CYCGRG	1 cut(s)	663
AvaII	GGWCC	1 cut(s)	617
BaeGI	GKGCMC	1 cut(s)	736
BanI	GGYRCC	1 cut(s)	731
BbvI	GCAGC	2 cut(s)	304, 671
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BciT130I	CCWGG	2 cut(s)	163, 229
BciVI	GTATCC	1 cut(s)	548
BcuI	ACTAGT	1 cut(s)	331
BfaI	CTAG	2 cut(s)	332, 534
BfmI	CTRYAG	1 cut(s)	740
BfuI	GTATCC	1 cut(s)	548
BisI	GCNGC	3 cut(s)	80, 318, 660
BlsI	GCNGC	3 cut(s)	81, 319, 661
Bme1390I	CCNGG	2 cut(s)	163, 229
Bme18I	GGWCC	1 cut(s)	617
BmeT110I	CYCGRG	1 cut(s)	663
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	617
BmiI	GGNNCC	2 cut(s)	226, 733
BmrFI	CCNGG	2 cut(s)	163, 229
BmsI	GCATC	1 cut(s)	462
BpmI	CTGGAG	2 cut(s)	572, 630
Bpu14I	TTCGAA	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	42, 162
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 43, 742
Bse1I	ACTGG	1 cut(s)	555
BseBI	CCWGG	2 cut(s)	163, 229
BseDI	CCNNGG	2 cut(s)	42, 162
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	3 cut(s)	32, 43, 742
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	555
BseSI	GKGCMC	1 cut(s)	736
BseXI	GCAGC	2 cut(s)	304, 671
BseYI	CCCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	82
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	36, 170
BshNI	GGYRCC	1 cut(s)	731
BsiEI	CGRYCG	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	663
BsiWI	CGTACG	1 cut(s)	172
BslFI	GGGAC	3 cut(s)	218, 309, 406
BslI	CCNNNNNNNGG	3 cut(s)	32, 43, 742
BsmFI	GGGAC	3 cut(s)	218, 309, 406
BsmI	GAATGC	2 cut(s)	360, 484
BsnI	GGCC	2 cut(s)	36, 170
BsoBI	CYCGRG	1 cut(s)	663
Bsp119I	TTCGAA	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	736
BspACI	CCGC	2 cut(s)	77, 80
BspANI	GGCC	2 cut(s)	36, 170
BspCNI	CTCAG	1 cut(s)	608
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	226, 733
BspMAI	CTGCAG	1 cut(s)	744
BspQI	GCTCTTC	1 cut(s)	440
BspT104I	TTCGAA	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	731
BsrI	ACTGG	1 cut(s)	555
BssECI	CCNNGG	2 cut(s)	42, 162
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	163, 229
Bst4CI	ACNGT	3 cut(s)	177, 314, 685
Bst6I	CTCTTC	3 cut(s)	432, 440, 747
BstACI	GRCGYC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	438
BstC8I	GCNNGC	1 cut(s)	705
BstDEI	CTNAG	1 cut(s)	595
BstENI	CCTNNNNNAGG	1 cut(s)	740
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	1 cut(s)	82
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	163, 229
BstSCI	CCNGG	2 cut(s)	161, 227
BstSFI	CTRYAG	1 cut(s)	740
BstSLI	GKGCMC	1 cut(s)	736
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	304, 671
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	2 cut(s)	36, 170
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	453
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	141, 151
Cac8I	GCNNGC	1 cut(s)	705
Cfr13I	GGNCC	1 cut(s)	617
CseI	GACGC	2 cut(s)	45, 71
Csp6I	GTAC	2 cut(s)	14, 173
CspCI	CAANNNNNGTGG	4 cut(s)	315, 350, 369, 404
CviAII	CATG	3 cut(s)	137, 199, 458
CviQI	GTAC	2 cut(s)	14, 173
DdeI	CTNAG	1 cut(s)	595
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	432, 440, 747
EarI	CTCTTC	3 cut(s)	432, 440, 747
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	617
Eco57I	CTGAAG	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	663
EcoNI	CCTNNNNNAGG	1 cut(s)	740
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	161, 227
EcoRV	GATATC	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	3 cut(s)	140, 202, 461
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	3 cut(s)	218, 309, 406
FatI	CATG	3 cut(s)	136, 198, 457
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	3 cut(s)	80, 318, 660
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	80, 318, 660
FspBI	CTAG	2 cut(s)	332, 534
GluI	GCNGC	3 cut(s)	80, 318, 660
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	2 cut(s)	572, 630
HaeIII	GGCC	2 cut(s)	36, 170
HgaI	GACGC	2 cut(s)	45, 71
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	140, 202, 461
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	4 cut(s)	235, 271, 310, 598
Hpy188III	TCNNGA	4 cut(s)	541, 615, 647, 665
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	2 cut(s)	87, 314
HpyAV	CCTTC	1 cut(s)	746
HpyCH4III	ACNGT	3 cut(s)	177, 314, 685
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	6 cut(s)	124, 320, 326, 416, 707, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	595
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	140, 202, 461
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	2 cut(s)	230, 553
Lsp1109I	GCAGC	2 cut(s)	304, 671
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	2 cut(s)	332, 534
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	3 cut(s)	62, 139, 576
MboII	GAAGA	7 cut(s)	22, 284, 419, 427, 452, 485, 764
MhlI	GDGCHC	1 cut(s)	736
MluCI	AATT	3 cut(s)	363, 443, 494
MmeI	TCCRAC	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	515
MspR9I	CCNGG	2 cut(s)	163, 229
Mva1269I	GAATGC	2 cut(s)	360, 484
MvaI	CCWGG	2 cut(s)	163, 229
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeI	CATATG	1 cut(s)	322
NlaIII	CATG	3 cut(s)	140, 202, 461
NlaIV	GGNNCC	2 cut(s)	226, 733
NmuCI	GTSAC	1 cut(s)	139
NspV	TTCGAA	1 cut(s)	438
PaeR7I	CTCGAG	1 cut(s)	663
PciSI	GCTCTTC	1 cut(s)	440
PctI	GAATGC	2 cut(s)	360, 484
PfeI	GAWTC	1 cut(s)	116
Pfl23II	CGTACG	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	81, 319, 661
Psp6I	CCWGG	2 cut(s)	161, 227
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	161, 227
PspLI	CGTACG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	226, 733
PspPI	GGNCC	1 cut(s)	617
PstI	CTGCAG	1 cut(s)	744
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	15, 174
RsaNI	GTAC	2 cut(s)	14, 173
SapI	GCTCTTC	1 cut(s)	440
SatI	GCNGC	3 cut(s)	80, 318, 660
Sau96I	GGNCC	1 cut(s)	617
ScrFI	CCNGG	2 cut(s)	163, 229
SduI	GDGCHC	1 cut(s)	736
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	1 cut(s)	740
Sfr274I	CTCGAG	1 cut(s)	663
SfuI	TTCGAA	1 cut(s)	438
SinI	GGWCC	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
SpeI	ACTAGT	1 cut(s)	331
Sse9I	AATT	3 cut(s)	363, 443, 494
SsiI	CCGC	2 cut(s)	77, 80
SspMI	CTAG	2 cut(s)	332, 534
StyD4I	CCNGG	2 cut(s)	161, 227
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	3 cut(s)	177, 314, 685
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	4 cut(s)	9, 48, 438, 664
TasI	AATT	3 cut(s)	363, 443, 494
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	116
TscAI	CASTG	2 cut(s)	148, 158
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	317, 659
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	229
TspRI	CASTG	2 cut(s)	148, 158
VpaK11BI	GGWCC	1 cut(s)	617
XagI	CCTNNNNNAGG	1 cut(s)	740
XapI	RAATTY	1 cut(s)	443
XhoI	CTCGAG	1 cut(s)	663
XspI	CTAG	2 cut(s)	332, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.