Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010130

Physical Location & Seq

Genomic Coordinates Reverse (-)

40202875 .. 40204199

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG186300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGGTTAGAGGTCCAGTTGGGGCCGGCTTTCGGCCAGCTCTCGGTTGAGTGGGCGGTTATGGGCTCAACTCCGCCGCAACGTCAATTCTTGTTCCACCTTCATGCGCCGGATTCTTTGCACCTCGGAATCCATGTCACTGATTTCCACTCTAATACGTGGGAGGCTCTACGGTCGGTTAGTCAGCTAGATGATATGCAGGACAGCATTGGAATAGGAGGCACTTGGTCAGAGTTCATAGACTATCTTGTCAATTCCATAAAATCTGAGCATACAAAGCTTGTTTTGGAGGGACCGTTAAACTCAGATGGCGCTGCAGCTGCAAAGTTAGTTGCTCAGAAGGCTAAAGGAATGCCTAAAATTTCCATTGCCATGACAAAGCTTGTGGGCTCGGCTGCTACTGAGGCTATTGCAAATCTCTCTCTTCAGCTCTTCAAAGAGTTCAAAAGCATCAACGAGTCTTATGTAGAAGAACGTGAGCGGTCTATGCAATTGTCCAAAGTGGTATCAGCAGAAAAGGAAAGAAACGACAGCATCCAGAGCCAACTTGAGCTGTATACTAAGAGGCAAAAGATACAAAGGATTGGTTCTTCGGACATTAATGGCGCACAAAACTCTCCAGAAAAACAAGCCACTAGAGATACAAAATCAACAAAAGTTGTCAATCGGGTCGTGCCTGCATATCGCAGGGCAAAAGTACGTGGTGCTGTTCTGCAGGATATTGAAGATGAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.08

Weight (kDa)

6.61

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64010
fragaria_vesca	FvH4_4g13030 FvH4_4g13030 FvH4_4g13030
malus_domestica	MD17G1201700.v1.1
prunus_persica	Prupe.4G273000_v2.0.a1 Prupe.4G273000_v2.0.a1
pyrus_communis	pycom17g20560
rosa_chinensis	RchiOBHm_Chr4g0412711 RchiOBHm_Chr4g0412751
rosa_laevigata	RLG00000008261 RLG00000008263
rosa_multiflora	Rmu_sc0001238.1_g000037
rosa_roxburghii	Rroxscaffold_5G00356970
rosa_rugosa	Rorug04G0116000 Rorug04G0116400
rosa_samantha	Rh4AG175000 Rh4BG174900 Rh4CG186300 Rh4DG172000
rosa_wichuraiana	Rw0G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccBSI	CCGCTC	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	557
AciI	CCGC	4 cut(s)	56, 74, 77, 481
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	410
AfaI	GTAC	1 cut(s)	699
AfiI	CCNNNNNNNGG	2 cut(s)	32, 43
AgsI	TTSAA	3 cut(s)	436, 445, 725
AluBI	AGCT	7 cut(s)	40, 187, 280, 320, 382, 430, 553
AluI	AGCT	7 cut(s)	40, 187, 280, 320, 382, 430, 553
AoxI	GGCC	2 cut(s)	23, 34
ApeKI	GCWGC	4 cut(s)	314, 317, 320, 395
ApoI	RAATTY	1 cut(s)	360
AseI	ATTAAT	1 cut(s)	600
AspLEI	GCGC	3 cut(s)	109, 314, 608
AspS9I	GGNCC	3 cut(s)	13, 23, 293
AvaII	GGWCC	2 cut(s)	13, 293
BanII	GRGCYC	2 cut(s)	68, 392
BbvI	GCAGC	4 cut(s)	301, 307, 329, 382
BccI	CCATC	1 cut(s)	302
BfaI	CTAG	2 cut(s)	188, 636
BfmI	CTRYAG	2 cut(s)	315, 713
BfoI	RGCGCY	1 cut(s)	315
BisI	GCNGC	5 cut(s)	77, 315, 318, 321, 396
BlsI	GCNGC	5 cut(s)	78, 316, 319, 322, 397
Bme18I	GGWCC	2 cut(s)	13, 293
BmgT120I	GGNCC	3 cut(s)	13, 23, 293
BmiI	GGNNCC	2 cut(s)	24, 294
BmsI	GCATC	2 cut(s)	459, 543
BpmI	CTGGAG	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	569
BsaAI	YACGTR	2 cut(s)	159, 701
BsaJI	CCNNGG	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 43
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	534
BseLI	CCNNNNNNNGG	2 cut(s)	32, 43
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	4 cut(s)	258, 318, 350, 393
BseNI	ACTGG	1 cut(s)	16
BseXI	GCAGC	4 cut(s)	301, 307, 329, 382
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	25, 36
BsiEI	CGRYCG	1 cut(s)	176
BsiSI	CCGG	2 cut(s)	26, 110
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	32, 43
BsmFI	GGGAC	1 cut(s)	306
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	25, 36
Bsp1286I	GDGCHC	2 cut(s)	68, 392
BspACI	CCGC	4 cut(s)	56, 74, 77, 481
BspANI	GGCC	2 cut(s)	25, 36
BspCNI	CTCAG	4 cut(s)	259, 317, 349, 394
BspLI	GGNNCC	2 cut(s)	24, 294
BspMAI	CTGCAG	2 cut(s)	319, 717
BspQI	GCTCTTC	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	366
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	124
BssNAI	GTATAC	1 cut(s)	558
Bst1107I	GTATAC	1 cut(s)	558
Bst4CI	ACNGT	2 cut(s)	174, 297
Bst6I	CTCTTC	2 cut(s)	429, 437
BstBAI	YACGTR	2 cut(s)	159, 701
BstC8I	GCNNGC	3 cut(s)	27, 38, 678
BstDEI	CTNAG	6 cut(s)	267, 304, 336, 402, 561, 735
BstF5I	GGATG	1 cut(s)	534
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	3 cut(s)	109, 314, 608
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	6 cut(s)	277, 320, 341, 404, 487, 540
BstSFI	CTRYAG	2 cut(s)	315, 713
BstV1I	GCAGC	4 cut(s)	301, 307, 329, 382
BstZ17I	GTATAC	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	25, 36
BtsCI	GGATG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	3 cut(s)	27, 38, 678
CfoI	GCGC	3 cut(s)	109, 314, 608
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	13, 23, 293
Csp6I	GTAC	1 cut(s)	698
CspCI	CAANNNNNGTGG	2 cut(s)	366, 401
CviAII	CATG	3 cut(s)	104, 134, 373
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	6 cut(s)	267, 304, 336, 402, 561, 735
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	429, 437
EarI	CTCTTC	2 cut(s)	429, 437
EciI	GGCGGA	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	68, 392
Eco47I	GGWCC	2 cut(s)	13, 293
Eco57I	CTGAAG	1 cut(s)	410
EcoT38I	GRGCYC	2 cut(s)	68, 392
FaeI	CATG	3 cut(s)	107, 137, 376
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	3 cut(s)	103, 133, 372
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	5 cut(s)	77, 315, 318, 321, 396
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	2 cut(s)	68, 392
Fsp4HI	GCNGC	5 cut(s)	77, 315, 318, 321, 396
FspBI	CTAG	2 cut(s)	188, 636
GlaI	GCGC	3 cut(s)	108, 313, 607
GluI	GCNGC	5 cut(s)	77, 315, 318, 321, 396
GsuI	CTGGAG	1 cut(s)	603
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	25, 36
HapII	CCGG	2 cut(s)	26, 110
HhaI	GCGC	3 cut(s)	109, 314, 608
Hin1II	CATG	3 cut(s)	107, 137, 376
Hin6I	GCGC	3 cut(s)	107, 312, 606
HinP1I	GCGC	3 cut(s)	107, 312, 606
HindIII	AAGCTT	2 cut(s)	278, 380
HinfI	GANTC	3 cut(s)	113, 129, 458
HpaII	CCGG	2 cut(s)	26, 110
Hpy166II	GTNNAC	1 cut(s)	558
Hpy188I	TCNGA	6 cut(s)	128, 232, 268, 307, 339, 595
Hpy188III	TCNNGA	2 cut(s)	538, 620
Hpy8I	GTNNAC	1 cut(s)	558
HpyAV	CCTTC	2 cut(s)	110, 334
HpyCH4III	ACNGT	2 cut(s)	174, 297
HpyCH4IV	ACGT	4 cut(s)	82, 158, 475, 700
HpyCH4V	TGCA	8 cut(s)	121, 199, 317, 323, 413, 490, 680, 715
HpyF10VI	GCNNNNNNNGC	6 cut(s)	277, 320, 341, 404, 487, 540
HpyF3I	CTNAG	6 cut(s)	267, 304, 336, 402, 561, 735
HpySE526I	ACGT	4 cut(s)	82, 158, 475, 700
Hsp92II	CATG	3 cut(s)	107, 137, 376
HspAI	GCGC	3 cut(s)	107, 312, 606
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
LguI	GCTCTTC	1 cut(s)	437
Lsp1109I	GCAGC	4 cut(s)	301, 307, 329, 382
LweI	GCATC	2 cut(s)	459, 543
MaeI	CTAG	2 cut(s)	188, 636
MaeII	ACGT	4 cut(s)	82, 158, 475, 700
MaeIII	GTNAC	1 cut(s)	136
MbiI	CCGCTC	1 cut(s)	481
MboII	GAAGA	5 cut(s)	416, 424, 482, 582, 737
MfeI	CAATTG	1 cut(s)	491
MhlI	GDGCHC	2 cut(s)	68, 392
MluCI	AATT	4 cut(s)	86, 253, 360, 491
MlyI	GAGTC	1 cut(s)	467
MnlI	CCTC	7 cut(s)	4, 134, 157, 212, 283, 397, 558
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	2 cut(s)	299, 600
MslI	CAYNNNNRTG	2 cut(s)	102, 371
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	2 cut(s)	26, 110
MunI	CAATTG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	357
MwoI	GCNNNNNNNGC	6 cut(s)	277, 320, 341, 404, 487, 540
NaeI	GCCGGC	1 cut(s)	27
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	107, 137, 376
NlaIV	GGNNCC	2 cut(s)	24, 294
NmeAIII	GCCGAG	1 cut(s)	371
NmuCI	GTSAC	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	437
PctI	GAATGC	1 cut(s)	357
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	113, 129
PkrI	GCNGC	5 cut(s)	78, 316, 319, 322, 397
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Ppu21I	YACGTR	2 cut(s)	159, 701
PshBI	ATTAAT	1 cut(s)	600
PspN4I	GGNNCC	2 cut(s)	24, 294
PspPI	GGNCC	3 cut(s)	13, 23, 293
PstI	CTGCAG	2 cut(s)	319, 717
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
RseI	CAYNNNNRTG	2 cut(s)	102, 371
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	2 cut(s)	299, 600
SatI	GCNGC	5 cut(s)	77, 315, 318, 321, 396
Sau96I	GGNCC	3 cut(s)	13, 23, 293
SchI	GAGTC	1 cut(s)	467
SduI	GDGCHC	2 cut(s)	68, 392
SfaNI	GCATC	2 cut(s)	459, 543
SfcI	CTRYAG	2 cut(s)	315, 713
SinI	GGWCC	2 cut(s)	13, 293
SmiMI	CAYNNNNRTG	2 cut(s)	102, 371
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	4 cut(s)	86, 253, 360, 491
SsiI	CCGC	4 cut(s)	56, 74, 77, 481
SspMI	CTAG	2 cut(s)	188, 636
TaaI	ACNGT	2 cut(s)	174, 297
TaiI	ACGT	4 cut(s)	85, 161, 478, 703
TasI	AATT	4 cut(s)	86, 253, 360, 491
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	113, 129
Tru1I	TTAA	2 cut(s)	299, 600
Tru9I	TTAA	2 cut(s)	299, 600
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	4 cut(s)	314, 317, 320, 395
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	92, 226
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	2 cut(s)	13, 293
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	1 cut(s)	360
XmiI	GTMKAC	1 cut(s)	557
XspI	CTAG	2 cut(s)	188, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.