Rorug04G0116400

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000178
Physical Location & Seq
Forward (+)
18337493 .. 18338818
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0116400.1

Sequence Viewer

Length: 414 bp
ATGAACTCTTTCCAATCACAGAGACTAGAGTCACAAGACTCGTTGAAAAGGAGGTGGCAGGAGATCAGGAGATCAAGTGCAACCACTCAACCTTCTTCTGATATGATCAGAAAACCTAATGGTGCTCTCAACGGCTTCCCAGGCCTTCTTGGTGATGATGATCTTGTTTCCACGTTGGTCCCTCCGGTGACTGTGGTGCTCGAAGGCCGCTCGATCTGCCAGCGCATCAGTCTCCAAAAGCATACGAGCTACCAAAGTCTAGCCAAAGCCCTCCGGCAAATGTTTGTGGATGGCGGCGATGTTGGAGCTACTGCGGCCGATATTGACAAGATTTCGTACGCGTTGCCAAGAGAATTCGAATACTTCCTGCCAAGGCAAACTCAAGGAGGGGAGGGAGAAGGAGCGCATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

137

Amino Acids

15.18

Weight (kDa)

7.9

Isoelectric Point (pI)

57.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 210
AccII CGCG 1 cut(s) 341
AciI CCGC 3 cut(s) 208, 294, 314
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 1 cut(s) 353
AfaI GTAC 1 cut(s) 338
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 1 cut(s) 46
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 249, 308
AluI AGCT 2 cut(s) 249, 308
Alw21I GWGCWC 2 cut(s) 127, 201
Alw26I GTCTC 2 cut(s) 16, 236
AoxI GGCC 3 cut(s) 142, 205, 315
ApoI RAATTY 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 225, 406
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 164, 199
AsuII TTCGAA 1 cut(s) 357
AvaII GGWCC 1 cut(s) 178
Bbv12I GWGCWC 2 cut(s) 127, 201
BccI CCATC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 1 cut(s) 105
BcoDI GTCTC 2 cut(s) 16, 236
BfaI CTAG 2 cut(s) 26, 260
BisI GCNGC 3 cut(s) 208, 295, 315
BlsI GCNGC 3 cut(s) 209, 296, 316
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 234
BoxI GACNNNNGTC 1 cut(s) 28
Bpu14I TTCGAA 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 139, 371
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bse8I GATNNNNATC 1 cut(s) 159
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 139, 371
BseGI GGATG 1 cut(s) 295
BseJI GATNNNNATC 1 cut(s) 159
BseX3I CGGCCG 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 341
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 3 cut(s) 144, 207, 317
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 2 cut(s) 127, 201
BsiSI CCGG 2 cut(s) 185, 274
BsiWI CGTACG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 16, 236
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 3 cut(s) 144, 207, 317
Bsp119I TTCGAA 1 cut(s) 357
Bsp1286I GDGCHC 2 cut(s) 127, 201
Bsp143I GATC 5 cut(s) 63, 71, 105, 160, 213
BspACI CCGC 3 cut(s) 208, 294, 314
BspANI GGCC 3 cut(s) 144, 207, 317
BspFNI CGCG 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 180
BspT104I TTCGAA 1 cut(s) 357
BsrBI CCGCTC 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 139, 371
BssMI GATC 5 cut(s) 63, 71, 105, 160, 213
BssT1I CCWWGG 1 cut(s) 371
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 193
BstBI TTCGAA 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 221
BstF5I GGATG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 341
BstHHI GCGC 2 cut(s) 225, 406
BstKTI GATC 5 cut(s) 66, 74, 108, 163, 216
BstMAI GTCTC 2 cut(s) 16, 236
BstMBI GATC 5 cut(s) 63, 71, 105, 160, 213
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 3 cut(s) 141, 216, 314
BstNI CCWGG 1 cut(s) 141
BstPAI GACNNNNGTC 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 139
BstUI CGCG 1 cut(s) 341
BstZI CGGCCG 1 cut(s) 315
BsuRI GGCC 3 cut(s) 144, 207, 317
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 221
CfoI GCGC 2 cut(s) 225, 406
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 337
CviJI RGCY 8 cut(s) 135, 144, 207, 249, 263, 269, 308, 317
CviKI_1 RGCY 8 cut(s) 135, 144, 207, 249, 263, 269, 308, 317
CviQI GTAC 1 cut(s) 337
DpnI GATC 5 cut(s) 65, 73, 107, 162, 215
DpnII GATC 5 cut(s) 63, 71, 105, 160, 213
EaeI YGGCCR 1 cut(s) 315
EagI CGGCCG 1 cut(s) 315
EclXI CGGCCG 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 371
Eco147I AGGCCT 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 178
Eco52I CGGCCG 1 cut(s) 315
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 371
ErhI CCWWGG 1 cut(s) 371
FaiI YATR 3 cut(s) 104, 243, 408
FaqI GGGAC 1 cut(s) 164
FbaI TGATCA 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 208, 295, 315
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 3 cut(s) 208, 295, 315
FspBI CTAG 2 cut(s) 26, 260
GlaI GCGC 2 cut(s) 224, 405
GluI GCNGC 3 cut(s) 208, 295, 315
HaeIII GGCC 3 cut(s) 144, 207, 317
HapII CCGG 2 cut(s) 185, 274
HhaI GCGC 2 cut(s) 225, 406
Hin6I GCGC 2 cut(s) 223, 404
HinP1I GCGC 2 cut(s) 223, 404
HinfI GANTC 2 cut(s) 29, 38
HpaII CCGG 2 cut(s) 185, 274
HphI GGTGA 2 cut(s) 164, 199
Hpy188I TCNGA 2 cut(s) 100, 110
Hpy188III TCNNGA 1 cut(s) 67
HpyAV CCTTC 4 cut(s) 102, 155, 197, 392
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 216, 314
HpySE526I ACGT 1 cut(s) 173
HspAI GCGC 2 cut(s) 223, 404
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 5 cut(s) 63, 71, 105, 160, 213
LmnI GCTCC 2 cut(s) 305, 401
LpnPI CCDG 8 cut(s) 44, 52, 126, 153, 198, 233, 287, 380
LweI GCATC 1 cut(s) 234
MaeI CTAG 2 cut(s) 26, 260
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 30, 187
MalI GATC 5 cut(s) 65, 73, 107, 162, 215
MbiI CCGCTC 1 cut(s) 210
MboI GATC 5 cut(s) 63, 71, 105, 160, 213
MboII GAAGA 1 cut(s) 87
MhlI GDGCHC 2 cut(s) 127, 201
MluCI AATT 1 cut(s) 353
MluI ACGCGT 1 cut(s) 339
MlyI GAGTC 2 cut(s) 32, 38
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 5 cut(s) 45, 192, 281, 380, 385
MroXI GAANNNNTTC 1 cut(s) 8
MspI CCGG 2 cut(s) 185, 274
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 141, 216, 314
NdeII GATC 5 cut(s) 63, 71, 105, 160, 213
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 30, 187
NspV TTCGAA 1 cut(s) 357
PceI AGGCCT 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 8
Pfl23II CGTACG 1 cut(s) 336
PkrI GCNGC 3 cut(s) 209, 296, 316
PleI GAGTC 2 cut(s) 32, 37
PpsI GAGTC 2 cut(s) 32, 37
PshAI GACNNNNGTC 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspLI CGTACG 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 178
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SatI GCNGC 3 cut(s) 208, 295, 315
Sau3AI GATC 5 cut(s) 63, 71, 105, 160, 213
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 2 cut(s) 32, 38
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 2 cut(s) 127, 201
SetI ASST 7 cut(s) 56, 94, 118, 176, 251, 310, 413
SfaNI GCATC 1 cut(s) 234
SfuI TTCGAA 1 cut(s) 357
SinI GGWCC 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
Sse9I AATT 1 cut(s) 353
SseBI AGGCCT 1 cut(s) 144
SsiI CCGC 3 cut(s) 208, 294, 314
SspMI CTAG 2 cut(s) 26, 260
StuI AGGCCT 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 176
TaqI TCGA 3 cut(s) 201, 212, 357
TasI AATT 1 cut(s) 353
TauI GCSGC 3 cut(s) 210, 297, 317
TseFI GTSAC 2 cut(s) 30, 187
Tsp45I GTSAC 2 cut(s) 30, 187
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 178
XapI RAATTY 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 26, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.