Rroxscaffold_1G00050570

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000178
Physical Location & Seq
Forward (+)
71072548 .. 71075841
3294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00050570.1

Sequence Viewer

Length: 984 bp
ATGGCTAATGGTAGACAAGGTCCAAAGTTTCTACATCAATTACGGACAAAAGCAATGCTGCAGCACCAAATGCGATCATCTACTCAAGAGCTTTTAAAGCTTGCTAAGTCAACGAGCAAGCCTACAACAACAGCACAAGCAACAACATCCTCATTGCACTCATCAGTAGAGCAGATTCTCACTTCCAATCGTACTCAACCTACAAAACATCTCTCTCAACCTCCAATTCAATCGTCACCACTTAAGCGAATGCTACGATCATCTTCTGTTCAGGAAGGTGGTGCAGTTAGCAAGAAAGTGCGTGGTGAGACTCGATGTCTTGAGTTATCCAAGAGGAAGTGCGATGGTGTCCAATTTAATATTGATATTCCAAAGCATACCATGAGAGCTGTAGGAACAAACTGCCAATTTTACATTACTGGTATGGGATGCTTCGTTCGAAAAAATGTTCCATTACAAATTAAGAAGTGGTTTGACATCTCAAGAGATGATGCTGCTTTGCTAATTTGCCATGTCCGTCATAAGAAGTTTCAGAAATATGAATCAGTAGGGGAAGCAATGGAGAATCGACCTGAAGATGTTGAAGAGGATGATTGGAACTACTTAATTGCAAATCTGTGGCAAGATCAAAAGTGGCTGCGAAATCCTGAAACTGGAGAGGTCATTGGTCGTATTGACCTTTTCAAGCTCACACGATACAATGAAAAGAAATCTGCATGGGTTGGTGATACAACAAAGAATGCTTTTGAAGAGATGAAAAATCTACAAAACGAGCCACAAATGAATGAAAAATCTGGTGAAATAATGTCTGAAGATGAGATCTATGATGAAGTGCTTTCCAAAATTGTTGGTCCACCACGATCAAGCTATATACGTGGCTTAGGAGCAGGCCCAAAGCCTAAAAGGTCTAAATTTTCTGCAAATGATGCTCAAGTAAGGGAGGAGAATCAAAGGGCAGATGAAGCGGAAAGAAGAGCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

327

Amino Acids

37.32

Weight (kDa)

9.42

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 13
AciI CCGC 1 cut(s) 965
AcsI RAATTY 1 cut(s) 911
AcuI CTGAAG 2 cut(s) 594, 831
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 653
AflII CTTAAG 1 cut(s) 242
AgsI TTSAA 4 cut(s) 230, 584, 685, 749
AhdI GACNNNNNGTC 1 cut(s) 315
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 5 cut(s) 91, 100, 389, 688, 867
AluI AGCT 5 cut(s) 91, 100, 389, 688, 867
Alw26I GTCTC 1 cut(s) 302
AoxI GGCC 1 cut(s) 889
ApeKI GCWGC 4 cut(s) 58, 61, 494, 637
ApoI RAATTY 1 cut(s) 911
AspS9I GGNCC 3 cut(s) 20, 851, 890
AsuHPI GGTGA 4 cut(s) 228, 317, 737, 809
AsuII TTCGAA 1 cut(s) 439
AvaII GGWCC 2 cut(s) 20, 851
BbvI GCAGC 4 cut(s) 45, 73, 481, 624
BccI CCATC 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 1 cut(s) 982
BfmI CTRYAG 2 cut(s) 59, 390
BfrI CTTAAG 1 cut(s) 242
BglII AGATCT 1 cut(s) 819
BisI GCNGC 4 cut(s) 59, 62, 495, 638
BlsI GCNGC 4 cut(s) 60, 63, 496, 639
Bme18I GGWCC 2 cut(s) 20, 851
BmeRI GACNNNNNGTC 1 cut(s) 315
BmgT120I GGNCC 3 cut(s) 20, 851, 890
BmsI GCATC 3 cut(s) 419, 481, 916
BpmI CTGGAG 1 cut(s) 675
Bpu10I CCTNAGC 1 cut(s) 880
Bpu14I TTCGAA 1 cut(s) 439
BpuEI CTTGAG 4 cut(s) 69, 341, 466, 915
BsaAI YACGTR 1 cut(s) 875
Bsc4I CCNNNNNNNGG 1 cut(s) 653
Bse1I ACTGG 2 cut(s) 424, 658
Bse3DI GCAATG 3 cut(s) 60, 152, 564
BseGI GGATG 3 cut(s) 146, 434, 595
BseLI CCNNNNNNNGG 1 cut(s) 653
BseMI GCAATG 3 cut(s) 60, 152, 564
BseNI ACTGG 2 cut(s) 424, 658
BseRI GAGGAG 1 cut(s) 956
BseXI GCAGC 4 cut(s) 45, 73, 481, 624
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 1 cut(s) 891
BslI CCNNNNNNNGG 1 cut(s) 653
BsmAI GTCTC 1 cut(s) 302
BsmI GAATGC 2 cut(s) 255, 745
BsnI GGCC 1 cut(s) 891
Bsp119I TTCGAA 1 cut(s) 439
Bsp143I GATC 5 cut(s) 74, 257, 625, 819, 860
BspACI CCGC 1 cut(s) 965
BspANI GGCC 1 cut(s) 891
BspMAI CTGCAG 1 cut(s) 63
BspQI GCTCTTC 1 cut(s) 967
BspT104I TTCGAA 1 cut(s) 439
BspTI CTTAAG 1 cut(s) 242
BsrDI GCAATG 3 cut(s) 60, 152, 564
BsrI ACTGG 2 cut(s) 424, 658
BssMI GATC 5 cut(s) 74, 257, 625, 819, 860
Bst6I CTCTTC 3 cut(s) 579, 744, 967
BstAFI CTTAAG 1 cut(s) 242
BstAPI GCANNNNNTGC 2 cut(s) 70, 926
BstBAI YACGTR 1 cut(s) 875
BstBI TTCGAA 1 cut(s) 439
BstC8I GCNNGC 3 cut(s) 102, 119, 889
BstDEI CTNAG 2 cut(s) 105, 880
BstF5I GGATG 3 cut(s) 146, 434, 595
BstKTI GATC 5 cut(s) 77, 260, 628, 822, 863
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 5 cut(s) 74, 257, 625, 819, 860
BstMWI GCNNNNNNNGC 4 cut(s) 70, 97, 926, 962
BstSFI CTRYAG 2 cut(s) 59, 390
BstV1I GCAGC 4 cut(s) 45, 73, 481, 624
BstX2I RGATCY 1 cut(s) 819
BstYI RGATCY 1 cut(s) 819
BsuRI GGCC 1 cut(s) 891
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 3 cut(s) 146, 434, 595
Cac8I GCNNGC 3 cut(s) 102, 119, 889
Cfr13I GGNCC 3 cut(s) 20, 851, 890
Csp6I GTAC 1 cut(s) 192
CviAII CATG 3 cut(s) 382, 512, 717
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 2 cut(s) 105, 880
DpnI GATC 5 cut(s) 76, 259, 627, 821, 862
DpnII GATC 5 cut(s) 74, 257, 625, 819, 860
DraI TTTAAA 1 cut(s) 96
DriI GACNNNNNGTC 1 cut(s) 315
Eam1104I CTCTTC 3 cut(s) 579, 744, 967
Eam1105I GACNNNNNGTC 1 cut(s) 315
EarI CTCTTC 3 cut(s) 579, 744, 967
Eco47I GGWCC 2 cut(s) 20, 851
Eco57I CTGAAG 2 cut(s) 594, 831
FaeI CATG 3 cut(s) 385, 515, 720
FatI CATG 3 cut(s) 381, 511, 716
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 4 cut(s) 59, 62, 495, 638
FokI GGATG 3 cut(s) 133, 441, 602
Fsp4HI GCNGC 4 cut(s) 59, 62, 495, 638
FspBI CTAG 1 cut(s) 982
GluI GCNGC 4 cut(s) 59, 62, 495, 638
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 1 cut(s) 891
Hin1II CATG 3 cut(s) 385, 515, 720
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 5 cut(s) 175, 310, 542, 565, 946
HphI GGTGA 4 cut(s) 228, 317, 737, 809
Hpy166II GTNNAC 3 cut(s) 14, 111, 854
Hpy188I TCNGA 2 cut(s) 534, 811
Hpy188III TCNNGA 5 cut(s) 86, 272, 320, 483, 647
Hpy8I GTNNAC 3 cut(s) 14, 111, 854
HpyAV CCTTC 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 874
HpyCH4V TGCA 6 cut(s) 61, 157, 284, 611, 716, 920
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 97, 926, 962
HpyF3I CTNAG 2 cut(s) 105, 880
HpySE526I ACGT 1 cut(s) 874
Hsp92II CATG 3 cut(s) 385, 515, 720
Kzo9I GATC 5 cut(s) 74, 257, 625, 819, 860
LguI GCTCTTC 1 cut(s) 967
LmnI GCTCC 1 cut(s) 884
LpnPI CCDG 7 cut(s) 257, 405, 585, 639, 660, 780, 873
Lsp1109I GCAGC 4 cut(s) 45, 73, 481, 624
LweI GCATC 3 cut(s) 419, 481, 916
MaeI CTAG 1 cut(s) 982
MaeII ACGT 1 cut(s) 874
MaeIII GTNAC 1 cut(s) 234
MalI GATC 5 cut(s) 76, 259, 627, 821, 862
MboI GATC 5 cut(s) 74, 257, 625, 819, 860
MboII GAAGA 6 cut(s) 255, 587, 596, 761, 824, 984
MflI RGATCY 1 cut(s) 819
MluCI AATT 9 cut(s) 38, 225, 353, 407, 459, 504, 606, 843, 911
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 6 cut(s) 160, 231, 327, 580, 652, 934
MseI TTAA 5 cut(s) 95, 243, 357, 462, 605
MspCI CTTAAG 1 cut(s) 242
Mva1269I GAATGC 2 cut(s) 255, 745
MwoI GCNNNNNNNGC 4 cut(s) 70, 97, 926, 962
NdeII GATC 5 cut(s) 74, 257, 625, 819, 860
NlaIII CATG 3 cut(s) 385, 515, 720
NmuCI GTSAC 1 cut(s) 234
NspV TTCGAA 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 967
PctI GAATGC 2 cut(s) 255, 745
PfeI GAWTC 4 cut(s) 175, 542, 565, 946
PflFI GACNNNGTC 1 cut(s) 18
PkrI GCNGC 4 cut(s) 60, 63, 496, 639
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
Ppu21I YACGTR 1 cut(s) 875
PspPI GGNCC 3 cut(s) 20, 851, 890
PstI CTGCAG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 819
PsyI GACNNNGTC 1 cut(s) 18
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 967
SaqAI TTAA 5 cut(s) 95, 243, 357, 462, 605
SatI GCNGC 4 cut(s) 59, 62, 495, 638
Sau3AI GATC 5 cut(s) 74, 257, 625, 819, 860
Sau96I GGNCC 3 cut(s) 20, 851, 890
SchI GAGTC 1 cut(s) 304
SfaNI GCATC 3 cut(s) 419, 481, 916
SfcI CTRYAG 2 cut(s) 59, 390
SfuI TTCGAA 1 cut(s) 439
SinI GGWCC 2 cut(s) 20, 851
SmlI CTYRAG 5 cut(s) 84, 242, 320, 481, 930
SmoI CTYRAG 5 cut(s) 84, 242, 320, 481, 930
Sse9I AATT 9 cut(s) 38, 225, 353, 407, 459, 504, 606, 843, 911
SsiI CCGC 1 cut(s) 965
SspI AATATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 982
TaiI ACGT 1 cut(s) 877
TaqI TCGA 3 cut(s) 313, 439, 568
TasI AATT 9 cut(s) 38, 225, 353, 407, 459, 504, 606, 843, 911
TfiI GAWTC 4 cut(s) 175, 542, 565, 946
Tru1I TTAA 5 cut(s) 95, 243, 357, 462, 605
Tru9I TTAA 5 cut(s) 95, 243, 357, 462, 605
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 4 cut(s) 58, 61, 494, 637
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 7 cut(s) 555, 717, 770, 797, 801, 843, 975
TspGWI ACGGA 2 cut(s) 58, 506
Tth111I GACNNNGTC 1 cut(s) 18
Vha464I CTTAAG 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 20, 851
XapI RAATTY 1 cut(s) 911
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.