FvH4_3g31042

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000178
Physical Location & Seq
Forward (+)
24731215 .. 24734706
3492 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31042.t1

Sequence Viewer

Length: 501 bp
ATGGTTAAGGATTACATTAAGTGGACAAAACATGGGGAAGAAGAGTCTGATGATGAAATTGAAAATGATGACATAATAGAAAAGGATGATGCAGTGGATGATGAGGAAGATGTTGATGATGTAGTTGAGATGCTACATGAATATCAAGCTGGTGCTTTTGCTGATAATGGGGTGTCTCAAGAGAATTCTCATGGTAGGGATGAAAAGAAAGAAGCAGAAGAAAATGATGCTAGCGATTCAACAATGCCGACAGATGATCCCTATCAACAAGAGTCACATGGTTTTGTCAATCCTATTGAGATTAATGATGACAACATGTCCTTAAGTAGAAGTGACATGGAAATGATTGTTGTGGAGTTGAATGCCAAAAGACAACGAAGAGAAAATGATAGCTTCATTAATGATGATTCTGACCCAGAAGATGGTGCCTCTGGAGATGACAATGCTGAGGAAGAATATGTCTCATCTGAGGATGATAATGATGATGATTTTCTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.89

Weight (kDa)

4.05

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 422
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 422
AflII CTTAAG 1 cut(s) 322
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 3 cut(s) 62, 240, 361
AhdI GACNNNNNGTC 1 cut(s) 316
AluBI AGCT 2 cut(s) 149, 393
AluI AGCT 2 cut(s) 149, 393
Alw26I GTCTC 2 cut(s) 180, 466
AlwI GGATC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 184
AseI ATTAAT 2 cut(s) 303, 399
AsuNHI GCTAGC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 425
BbvCI CCTCAGC 1 cut(s) 447
BccI CCATC 1 cut(s) 416
BcoDI GTCTC 2 cut(s) 180, 466
BfaI CTAG 1 cut(s) 231
BfrI CTTAAG 1 cut(s) 322
BmeRI GACNNNNNGTC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 427
BmsI GCATC 3 cut(s) 79, 120, 217
BmtI GCTAGC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 453
Bpu10I CCTNAGC 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse8I GATNNNNATC 1 cut(s) 261
BseGI GGATG 4 cut(s) 91, 103, 205, 478
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMII CTCAG 2 cut(s) 438, 459
BshNI GGYRCC 1 cut(s) 425
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 2 cut(s) 180, 466
BsmI GAATGC 1 cut(s) 367
Bsp143I GATC 1 cut(s) 256
BspCNI CTCAG 2 cut(s) 439, 460
BspLI GGNNCC 1 cut(s) 427
BspOI GCTAGC 1 cut(s) 234
BspPI GGATC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 425
BspTI CTTAAG 1 cut(s) 322
BssMI GATC 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 36, 373
BstAFI CTTAAG 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 447, 468
BstF5I GGATG 4 cut(s) 91, 103, 205, 478
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 2 cut(s) 180, 466
BstMBI GATC 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 319
BtsCI GGATG 4 cut(s) 91, 103, 205, 478
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 232
CviAII CATG 6 cut(s) 32, 137, 191, 278, 316, 337
CviJI RGCY 2 cut(s) 149, 393
CviKI_1 RGCY 2 cut(s) 149, 393
DdeI CTNAG 2 cut(s) 447, 468
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
DriI GACNNNNNGTC 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 36, 373
Eam1105I GACNNNNNGTC 1 cut(s) 316
EarI CTCTTC 2 cut(s) 36, 373
EcoRI GAATTC 1 cut(s) 184
FaeI CATG 6 cut(s) 35, 140, 194, 281, 319, 340
FaiI YATR 8 cut(s) 33, 74, 138, 192, 279, 317, 338, 459
FatI CATG 6 cut(s) 31, 136, 190, 277, 315, 336
FokI GGATG 4 cut(s) 98, 110, 212, 485
FspBI CTAG 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 453
Hin1II CATG 6 cut(s) 35, 140, 194, 281, 319, 340
HinfI GANTC 4 cut(s) 44, 236, 272, 407
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 3 cut(s) 49, 412, 469
Hpy188III TCNNGA 2 cut(s) 179, 432
Hpy8I GTNNAC 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 447, 468
Hsp92II CATG 6 cut(s) 35, 140, 194, 281, 319, 340
Kzo9I GATC 1 cut(s) 256
LpnPI CCDG 3 cut(s) 135, 417, 429
LweI GCATC 3 cut(s) 79, 120, 217
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 273, 332
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 7 cut(s) 50, 53, 119, 230, 390, 431, 464
MluCI AATT 2 cut(s) 57, 184
MlyI GAGTC 2 cut(s) 53, 281
MnlI CCTC 4 cut(s) 97, 439, 442, 463
MseI TTAA 5 cut(s) 6, 18, 303, 323, 399
MslI CAYNNNNRTG 1 cut(s) 341
MspCI CTTAAG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 367
NdeII GATC 1 cut(s) 256
NheI GCTAGC 1 cut(s) 230
NlaIII CATG 6 cut(s) 35, 140, 194, 281, 319, 340
NlaIV GGNNCC 1 cut(s) 427
NmuCI GTSAC 2 cut(s) 273, 332
NspI RCATGY 1 cut(s) 319
PciI ACATGT 1 cut(s) 315
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 2 cut(s) 236, 407
PflMI CCANNNNNTGG 1 cut(s) 422
PleI GAGTC 2 cut(s) 52, 280
PpsI GAGTC 2 cut(s) 52, 280
PscI ACATGT 1 cut(s) 315
PshBI ATTAAT 2 cut(s) 303, 399
PspN4I GGNNCC 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 5 cut(s) 6, 18, 303, 323, 399
Sau3AI GATC 1 cut(s) 256
SchI GAGTC 2 cut(s) 53, 281
SetI ASST 2 cut(s) 151, 395
SfaNI GCATC 3 cut(s) 79, 120, 217
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 177, 322
SmoI CTYRAG 2 cut(s) 177, 322
Sse9I AATT 2 cut(s) 57, 184
SspMI CTAG 1 cut(s) 231
TasI AATT 2 cut(s) 57, 184
TfiI GAWTC 2 cut(s) 236, 407
Tru1I TTAA 5 cut(s) 6, 18, 303, 323, 399
Tru9I TTAA 5 cut(s) 6, 18, 303, 323, 399
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 2 cut(s) 273, 332
Tsp45I GTSAC 2 cut(s) 273, 332
TspDTI ATGAA 4 cut(s) 69, 153, 216, 385
TspRI CASTG 1 cut(s) 99
Van91I CCANNNNNTGG 1 cut(s) 422
Vha464I CTTAAG 1 cut(s) 322
VspI ATTAAT 2 cut(s) 303, 399
XapI RAATTY 1 cut(s) 184
XceI RCATGY 1 cut(s) 319
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.