Rroxscaffold_4G00299690

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000178
Physical Location & Seq
Forward (+)
19632746 .. 19637121
4376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299690.1

Sequence Viewer

Length: 1167 bp
ATGGCCAAGAGATCACAAGGTCCTAAATTTTCGCATCAATTGCGAACATCAGCACTTCCACCAAACCACTTGCGAGCATCTGCTGAAAAGGTTTCTAGCATTGTAAAGCCTTTGGATAAACCTACAACACCTGCATGTCCATTGCGATCTTCAACTGAAAAGGTTTCTAAGCATTCAAAGACACAGCCTTCCACAAATCGATCAACACATCCTCGTCGACCTGCTACGCAGTCATCAAGGACTCCATCTCCTCCTTCTTCTCCACATGTTATGAGATCGTCTCCACTTTCCCCTTCACCTTCACATATGCGCAGAGTCTTATCAATCTCTAATCAGCACGCATCAACTCCAAGTGCGCATGAAGAGATAGCTGAATCTTCTCAAGTTGCTCATCCTCCTACCTTAGAAGAGAACATTGGTGGAGCGAATTGCCAGTCTTACATTACAGAGATAGGCTGCATTGTTAGGCAAAATGCTCCATTACAAGTTAAGCATTGGAGTGGAATTAGCAAGGATGATGTTGCTTCGATGGTTCGTCTTGTCCGTGAGAAATTCAAATTGGGGAATGAACCACAAGTGAATGAGGCTATTGAGGCAGACATGAAAAGAAGATATAGCACTTGGCGATACAATTTCCATAAGACATTTTTGCAATATGAATCAGTGGAGGAGGCACTTGAGAATAGACCTGAAAATGTGGGAGAAGATGACTGGAATTTTCTCATCAATTGGTGGCACGATGATGAGTGGCTGGGTGAGATGACAAAACTGAAAAATCCCGAGCAAACAAATGAAGAGTCAGAAAAAGCAATGTCTAATGATGAGATATATGATAAATTTCTTTCCACAATTGTTGGTCCACCTCCGTTAGGCTACATACATGGTTTAGGAGCATGTCCTAAGCCTAAAAATTCAAAGGTCTCCAATAATCATTCACAACTTCAAGAGGCTACACAGAGGACAGATGAGGCAGAAAGAAGATCTACCCAACTTGCAGAGGAGTTGGAGGCAATGAAGGCTAGTGCAGCTCAACAAAATGAAGAATTAGAGGCAGTGAAGGCTAGTGCAGCTCAACAAAATGAACAGTTAGAAGCAGTTAAAGCAAAGCAGAATGAGACGGACGCTCTTTTGAAAAAATTGTTGGAACAATTTTCCTCTAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

388

Amino Acids

43.54

Weight (kDa)

7.25

Isoelectric Point (pI)

63.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 139
Acc16I TGCGCA 2 cut(s) 311, 357
Acc36I ACCTGC 2 cut(s) 139, 229
AccI GTMKAC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 26, 551, 715, 836, 910
AfiI CCNNNNNNNGG 1 cut(s) 869
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 6 cut(s) 153, 177, 556, 915, 944, 1132
AjuI GAANNNNNNNTTGG 6 cut(s) 399, 431, 542, 574, 1124, 1156
AluBI AGCT 3 cut(s) 371, 1028, 1070
AluI AGCT 3 cut(s) 371, 1028, 1070
Alw26I GTCTC 3 cut(s) 285, 925, 1109
Ama87I CYCGRG 1 cut(s) 779
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 456, 1025, 1067
ApoI RAATTY 5 cut(s) 26, 551, 715, 836, 910
ArsI GACNNNNNNTTYG 4 cut(s) 419, 451, 782, 814
AspLEI GCGC 2 cut(s) 312, 358
AspS9I GGNCC 2 cut(s) 20, 857
AsuHPI GGTGA 2 cut(s) 288, 767
AvaI CYCGRG 1 cut(s) 779
AvaII GGWCC 2 cut(s) 20, 857
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 3 cut(s) 443, 1037, 1079
BccI CCATC 2 cut(s) 253, 523
BcoDI GTCTC 3 cut(s) 285, 925, 1109
BfaI CTAG 4 cut(s) 96, 1020, 1062, 1158
BfuAI ACCTGC 2 cut(s) 139, 229
BglII AGATCT 1 cut(s) 980
BisI GCNGC 3 cut(s) 457, 1026, 1068
BlsI GCNGC 3 cut(s) 458, 1027, 1069
Bme18I GGWCC 2 cut(s) 20, 857
BmeT110I CYCGRG 1 cut(s) 779
BmgT120I GGNCC 2 cut(s) 20, 857
BmsI GCATC 3 cut(s) 43, 86, 350
BplI GAGNNNNNCTC 2 cut(s) 265, 297
Bpu10I CCTNAGC 1 cut(s) 900
BpuEI CTTGAG 2 cut(s) 366, 698
Bsa29I ATCGAT 1 cut(s) 199
BsaI GGTCTC 1 cut(s) 925
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 869
Bse1I ACTGG 2 cut(s) 433, 716
Bse3DI GCAATG 3 cut(s) 140, 816, 1017
BseCI ATCGAT 1 cut(s) 199
BseGI GGATG 3 cut(s) 208, 391, 520
BseLI CCNNNNNNNGG 1 cut(s) 869
BseMI GCAATG 3 cut(s) 140, 816, 1017
BseNI ACTGG 2 cut(s) 433, 716
BseRI GAGGAG 3 cut(s) 240, 683, 1013
BseXI GCAGC 3 cut(s) 443, 1037, 1079
BseYI CCCAGC 1 cut(s) 751
BsgI GTGCAG 2 cut(s) 1044, 1086
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 779
BslI CCNNNNNNNGG 1 cut(s) 869
BsmAI GTCTC 3 cut(s) 285, 925, 1109
BsmBI CGTCTC 2 cut(s) 285, 1109
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 925
BsoBI CYCGRG 1 cut(s) 779
Bsp143I GATC 5 cut(s) 11, 146, 200, 275, 980
BspANI GGCC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 199
BspMI ACCTGC 2 cut(s) 139, 229
BspTNI GGTCTC 1 cut(s) 925
BsrDI GCAATG 3 cut(s) 140, 816, 1017
BsrI ACTGG 2 cut(s) 433, 716
BssMI GATC 5 cut(s) 11, 146, 200, 275, 980
Bst4CI ACNGT 1 cut(s) 1086
Bst6I CTCTTC 3 cut(s) 357, 402, 789
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 75, 339
BstDEI CTNAG 3 cut(s) 168, 403, 900
BstENI CCTNNNNNAGG 1 cut(s) 867
BstF5I GGATG 3 cut(s) 208, 391, 520
BstHHI GCGC 2 cut(s) 312, 358
BstKTI GATC 5 cut(s) 14, 149, 203, 278, 983
BstMAI GTCTC 3 cut(s) 285, 925, 1109
BstMBI GATC 5 cut(s) 11, 146, 200, 275, 980
BstMWI GCNNNNNNNGC 7 cut(s) 40, 593, 1016, 1025, 1058, 1067, 1100
BstNSI RCATGY 3 cut(s) 138, 269, 897
BstV1I GCAGC 3 cut(s) 443, 1037, 1079
BstX2I RGATCY 1 cut(s) 980
BstYI RGATCY 1 cut(s) 980
Bsu15I ATCGAT 1 cut(s) 199
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 199
BtsCI GGATG 3 cut(s) 208, 391, 520
BtsI GCAGTG 1 cut(s) 1059
BtsIMutI CAGTG 2 cut(s) 669, 1059
BveI ACCTGC 2 cut(s) 139, 229
Cac8I GCNNGC 2 cut(s) 75, 339
CfoI GCGC 2 cut(s) 312, 358
Cfr13I GGNCC 2 cut(s) 20, 857
ClaI ATCGAT 1 cut(s) 199
CseI GACGC 1 cut(s) 1130
CspCI CAANNNNNGTGG 2 cut(s) 835, 870
CviAII CATG 6 cut(s) 135, 266, 359, 601, 881, 894
DdeI CTNAG 3 cut(s) 168, 403, 900
DpnI GATC 5 cut(s) 13, 148, 202, 277, 982
DpnII GATC 5 cut(s) 11, 146, 200, 275, 980
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 357, 402, 789
EarI CTCTTC 3 cut(s) 357, 402, 789
Eco31I GGTCTC 1 cut(s) 925
Eco47I GGWCC 2 cut(s) 20, 857
Eco88I CYCGRG 1 cut(s) 779
EcoNI CCTNNNNNAGG 1 cut(s) 867
EcoO109I RGGNCCY 1 cut(s) 20
Esp3I CGTCTC 2 cut(s) 285, 1109
FaeI CATG 6 cut(s) 138, 269, 362, 604, 884, 897
FatI CATG 6 cut(s) 134, 265, 358, 600, 880, 893
FauNDI CATATG 1 cut(s) 306
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 457, 1026, 1068
FokI GGATG 3 cut(s) 195, 378, 527
Fsp4HI GCNGC 3 cut(s) 457, 1026, 1068
FspAI RTGCGCAY 1 cut(s) 357
FspBI CTAG 4 cut(s) 96, 1020, 1062, 1158
FspI TGCGCA 2 cut(s) 311, 357
GlaI GCGC 2 cut(s) 311, 357
GluI GCNGC 3 cut(s) 457, 1026, 1068
GsaI CCCAGC 1 cut(s) 755
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 1130
HhaI GCGC 2 cut(s) 312, 358
Hin1II CATG 6 cut(s) 138, 269, 362, 604, 884, 897
Hin6I GCGC 2 cut(s) 310, 356
HinP1I GCGC 2 cut(s) 310, 356
HincII GTYRAC 1 cut(s) 218
HindII GTYRAC 1 cut(s) 218
HinfI GANTC 5 cut(s) 241, 315, 374, 659, 797
HphI GGTGA 2 cut(s) 288, 767
Hpy166II GTNNAC 2 cut(s) 218, 860
Hpy188I TCNGA 1 cut(s) 802
Hpy188III TCNNGA 2 cut(s) 779, 944
Hpy8I GTNNAC 2 cut(s) 218, 860
Hpy99I CGWCG 1 cut(s) 219
HpyAV CCTTC 6 cut(s) 198, 264, 303, 309, 1009, 1051
HpyCH4III ACNGT 1 cut(s) 1086
HpyCH4V TGCA 6 cut(s) 134, 459, 652, 995, 1025, 1067
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 593, 1016, 1025, 1058, 1067, 1100
HpyF3I CTNAG 3 cut(s) 168, 403, 900
Hsp92II CATG 6 cut(s) 138, 269, 362, 604, 884, 897
HspAI GCGC 2 cut(s) 310, 356
Kzo9I GATC 5 cut(s) 11, 146, 200, 275, 980
LmnI GCTCC 3 cut(s) 422, 481, 890
LpnPI CCDG 6 cut(s) 144, 234, 446, 697, 702, 737
Lsp1109I GCAGC 3 cut(s) 443, 1037, 1079
LweI GCATC 3 cut(s) 43, 86, 350
MaeI CTAG 4 cut(s) 96, 1020, 1062, 1158
MalI GATC 5 cut(s) 13, 148, 202, 277, 982
MboI GATC 5 cut(s) 11, 146, 200, 275, 980
MfeI CAATTG 3 cut(s) 38, 727, 849
MflI RGATCY 1 cut(s) 980
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 235, 324, 806
MmeI TCCRAC 2 cut(s) 984, 1122
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 489, 1098
MslI CAYNNNNRTG 3 cut(s) 133, 498, 741
Msp20I TGGCCA 1 cut(s) 5
MunI CAATTG 3 cut(s) 38, 727, 849
Mva1269I GAATGC 1 cut(s) 172
MwoI GCNNNNNNNGC 7 cut(s) 40, 593, 1016, 1025, 1058, 1067, 1100
NdeI CATATG 1 cut(s) 306
NdeII GATC 5 cut(s) 11, 146, 200, 275, 980
NlaIII CATG 6 cut(s) 138, 269, 362, 604, 884, 897
NsbI TGCGCA 2 cut(s) 311, 357
NspI RCATGY 3 cut(s) 138, 269, 897
PaqCI CACCTGC 1 cut(s) 139
PciI ACATGT 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 541
PctI GAATGC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 374, 659
PkrI GCNGC 3 cut(s) 458, 1027, 1069
PleI GAGTC 3 cut(s) 235, 323, 805
PpsI GAGTC 3 cut(s) 235, 323, 805
PpuMI RGGWCCY 1 cut(s) 20
PscI ACATGT 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 751
PspPI GGNCC 2 cut(s) 20, 857
PspPPI RGGWCCY 1 cut(s) 20
PsuI RGATCY 1 cut(s) 980
RseI CAYNNNNRTG 3 cut(s) 133, 498, 741
SalI GTCGAC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 489, 1098
SatI GCNGC 3 cut(s) 457, 1026, 1068
Sau3AI GATC 5 cut(s) 11, 146, 200, 275, 980
Sau96I GGNCC 2 cut(s) 20, 857
SchI GAGTC 3 cut(s) 235, 324, 806
SfaNI GCATC 3 cut(s) 43, 86, 350
SinI GGWCC 2 cut(s) 20, 857
SmiMI CAYNNNNRTG 3 cut(s) 133, 498, 741
SmlI CTYRAG 2 cut(s) 381, 677
SmoI CTYRAG 2 cut(s) 381, 677
SspMI CTAG 4 cut(s) 96, 1020, 1062, 1158
TaaI ACNGT 1 cut(s) 1086
TaqI TCGA 3 cut(s) 199, 217, 527
TfiI GAWTC 2 cut(s) 374, 659
Tru1I TTAA 2 cut(s) 489, 1098
Tru9I TTAA 2 cut(s) 489, 1098
TscAI CASTG 2 cut(s) 669, 1059
TseI GCWGC 3 cut(s) 456, 1025, 1067
TspDTI ATGAA 8 cut(s) 375, 582, 617, 672, 807, 1028, 1053, 1095
TspGWI ACGGA 3 cut(s) 533, 855, 1133
TspRI CASTG 2 cut(s) 669, 1059
VpaK11BI GGWCC 2 cut(s) 20, 857
XagI CCTNNNNNAGG 1 cut(s) 867
XapI RAATTY 5 cut(s) 26, 551, 715, 836, 910
XceI RCATGY 3 cut(s) 138, 269, 897
XmiI GTMKAC 1 cut(s) 217
XspI CTAG 4 cut(s) 96, 1020, 1062, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.