Rh2BG265300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000178
Physical Location & Seq
Reverse (-)
28536560 .. 28537398
839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG265300.1

Sequence Viewer

Length: 483 bp
ATGTTCAAGCTGACAAGATTTAGGGAAAACAAGAAAACATGGGTCGGGGATGTCACGGAAAATGCTTATGGTGAGATGACAAAATTGAAAAATCCTGAGCAAACAAATGAAGAGTCAGAAAAAGCAATGTCTGATGATGAGATATATGATAAAGTTCTTTCCACAATTGTTGGTCCACCTCCGTTAGGCTACATACGTGGTTTAGGAGCAGGTCCTAAGCCTAAAAATTCAAAGGTCTCCAATAATCATTCACAACTTCAGGAGGCTACACGGAGGGCAGATGAGGCAGAGAGAAGATCTACCCAACTTGCAGAGGAGTTGGAGGCAATGAAGGCTAGTGCAGCTCAACAAAATGAAGAATTAGAGGTAGTGAAGGCTAGTGCAGCTCAACAAAATGAACAGTTAGAAGCAGTTAAAGCAAAGCAGAATGAGACGGACGCTCTTTTGAAAAAATTGCTGGAACAATTTTCCTCTAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.95

Weight (kDa)

5.66

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 226
AcuI CTGAAG 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 4 cut(s) 7, 88, 231, 448
AluBI AGCT 3 cut(s) 10, 344, 386
AluI AGCT 3 cut(s) 10, 344, 386
Alw26I GTCTC 2 cut(s) 241, 425
ApeKI GCWGC 2 cut(s) 341, 383
ApoI RAATTY 1 cut(s) 226
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AspS9I GGNCC 2 cut(s) 173, 212
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 2 cut(s) 173, 212
BbvI GCAGC 2 cut(s) 353, 395
BcoDI GTCTC 2 cut(s) 241, 425
BfaI CTAG 3 cut(s) 336, 378, 474
BfuAI ACCTGC 1 cut(s) 200
BglII AGATCT 1 cut(s) 296
BisI GCNGC 2 cut(s) 342, 384
BlsI GCNGC 2 cut(s) 343, 385
Bme18I GGWCC 2 cut(s) 173, 212
BmgT120I GGNCC 2 cut(s) 173, 212
Bpu10I CCTNAGC 2 cut(s) 96, 216
BsaAI YACGTR 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse3DI GCAATG 2 cut(s) 132, 333
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 2 cut(s) 132, 333
BseMII CTCAG 1 cut(s) 87
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 353, 395
BsgI GTGCAG 2 cut(s) 360, 402
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 2 cut(s) 241, 425
BsmBI CGTCTC 1 cut(s) 425
Bso31I GGTCTC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 241
BsrDI GCAATG 2 cut(s) 132, 333
BssMI GATC 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 402
Bst6I CTCTTC 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 96, 216
BstENI CCTNNNNNAGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 1 cut(s) 299
BstMAI GTCTC 2 cut(s) 241, 425
BstMBI GATC 1 cut(s) 296
BstMWI GCNNNNNNNGC 5 cut(s) 284, 332, 341, 383, 416
BstV1I GCAGC 2 cut(s) 353, 395
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BtsCI GGATG 1 cut(s) 55
BveI ACCTGC 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 173, 212
CseI GACGC 1 cut(s) 446
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 1 cut(s) 39
CviJI RGCY 8 cut(s) 10, 189, 220, 266, 335, 344, 377, 386
CviKI_1 RGCY 8 cut(s) 10, 189, 220, 266, 335, 344, 377, 386
DdeI CTNAG 2 cut(s) 96, 216
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 173, 212
Eco57I CTGAAG 1 cut(s) 242
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 425
FaeI CATG 1 cut(s) 42
FaiI YATR 5 cut(s) 40, 69, 145, 147, 194
FatI CATG 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 342, 384
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 342, 384
FspBI CTAG 3 cut(s) 336, 378, 474
GluI GCNGC 2 cut(s) 342, 384
HgaI GACGC 1 cut(s) 446
Hin1II CATG 1 cut(s) 42
HinfI GANTC 1 cut(s) 113
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 2 cut(s) 118, 133
Hpy188III TCNNGA 2 cut(s) 95, 260
Hpy8I GTNNAC 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 325, 367
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 311, 341, 383
HpyF10VI GCNNNNNNNGC 5 cut(s) 284, 332, 341, 383, 416
HpyF3I CTNAG 2 cut(s) 96, 216
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 1 cut(s) 42
Kzo9I GATC 1 cut(s) 296
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 4 cut(s) 108, 195, 245, 443
Lsp1109I GCAGC 2 cut(s) 353, 395
MaeI CTAG 3 cut(s) 336, 378, 474
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 298
MboI GATC 1 cut(s) 296
MboII GAAGA 3 cut(s) 122, 306, 368
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 296
MluCI AATT 6 cut(s) 83, 165, 226, 359, 452, 464
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 8 cut(s) 189, 256, 267, 277, 307, 316, 358, 481
MseI TTAA 1 cut(s) 414
MunI CAATTG 1 cut(s) 165
MwoI GCNNNNNNNGC 5 cut(s) 284, 332, 341, 383, 416
NdeII GATC 1 cut(s) 296
NlaIII CATG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 343, 385
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 197
PpuMI RGGWCCY 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 212
PspPI GGNCC 2 cut(s) 173, 212
PspPPI RGGWCCY 1 cut(s) 212
PsuI RGATCY 1 cut(s) 296
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 2 cut(s) 342, 384
Sau3AI GATC 1 cut(s) 296
Sau96I GGNCC 2 cut(s) 173, 212
SchI GAGTC 1 cut(s) 122
SetI ASST 8 cut(s) 12, 181, 199, 214, 237, 346, 369, 388
SinI GGWCC 2 cut(s) 173, 212
Sse9I AATT 6 cut(s) 83, 165, 226, 359, 452, 464
SspMI CTAG 3 cut(s) 336, 378, 474
TaaI ACNGT 1 cut(s) 402
TaiI ACGT 1 cut(s) 199
TasI AATT 6 cut(s) 83, 165, 226, 359, 452, 464
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 2 cut(s) 341, 383
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 4 cut(s) 123, 344, 369, 411
TspGWI ACGGA 4 cut(s) 71, 171, 286, 449
VpaK11BI GGWCC 2 cut(s) 173, 212
XagI CCTNNNNNAGG 1 cut(s) 183
XapI RAATTY 1 cut(s) 226
XspI CTAG 3 cut(s) 336, 378, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.