Rmu_sc0002500.1_g000002

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002500.1
OG0000178
Physical Location & Seq
Forward (+)
9779 .. 10561
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002500.1_g000002.1.cds

Sequence Viewer

Length: 783 bp
atgccgattgataaatcttggatgcaattaagtagatcagacccaaagtatgatcaaggagttacagagtttcttgattatgcatatagccatgataagtgggtagaggatgacatgataatatgtccatgcaaagtatgtggtttaaatagagacagacttgtgcggtctgaagtgcactggcatctccttagatacggaattaaaccacactatactttctggaatttgcatggggaggctgatgacgataatagtgatgaaagtgaggatgatagtaattgtgagactgatggagatactgataatggagcaacccctatggagctatgtgatgatatgcaagatttgatagaagaaatttttccgcaagatccaaatgaagatgcgcaaagattttacaagttgttggaagaggcggagacaccgttatatgagggttgcaaaaagtattccaacttgtcatttattgtcaagttgatgcacatcaagtgcagcaatacttggagcaacaaatcatttaacatgttgctagaactgttaaaagatgcatttcctatgtgcgaaaaacttcccaaatccaattatggtgcaaagaagattgttcaagaactcggtcttcattatgagagaattgacgcatgcaagaatgactgtataatttattacaaggagcatgcaaatgcaactgaatgtcctgtatgtaagtcttcaagatggcagacacaatgtggcaagggcgataaaaagaagcgaaagaagattccttggaaggtgttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

260

Amino Acids

30.41

Weight (kDa)

5.18

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 390
AciI CCGC 3 cut(s) 166, 368, 419
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 2 cut(s) 226, 360
AcuI CTGAAG 1 cut(s) 192
AdeI CACNNNGTG 1 cut(s) 731
AflIII ACRYGT 1 cut(s) 525
AgsI TTSAA 2 cut(s) 608, 714
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 3 cut(s) 147, 281, 416
Alw44I GTGCAC 1 cut(s) 176
AlwI GGATC 1 cut(s) 368
ApaLI GTGCAC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 495
ApoI RAATTY 2 cut(s) 226, 360
Asp700I GAANNNNTTC 2 cut(s) 363, 570
AspLEI GCGC 1 cut(s) 391
BaeGI GKGCMC 1 cut(s) 180
BbsI GAAGAC 2 cut(s) 611, 702
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 507
BccI CCATC 2 cut(s) 287, 711
BclI TGATCA 1 cut(s) 52
BcoDI GTCTC 3 cut(s) 147, 281, 416
BfaI CTAG 1 cut(s) 533
BisI GCNGC 1 cut(s) 496
BlsI GCNGC 1 cut(s) 497
BmsI GCATC 5 cut(s) 12, 193, 376, 471, 538
BpiI GAAGAC 2 cut(s) 611, 702
BsaBI GATNNNNATC 1 cut(s) 485
BsaJI CCNNGG 1 cut(s) 767
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bse1I ACTGG 1 cut(s) 185
Bse8I GATNNNNATC 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 767
BseGI GGATG 3 cut(s) 27, 115, 277
BseJI GATNNNNATC 1 cut(s) 485
BseNI ACTGG 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 1 cut(s) 507
BsgI GTGCAG 1 cut(s) 514
BsiHKAI GWGCWC 1 cut(s) 180
BsmAI GTCTC 3 cut(s) 147, 281, 416
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 3 cut(s) 35, 52, 373
BspACI CCGC 3 cut(s) 166, 368, 419
BspPI GGATC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 767
BssMI GATC 3 cut(s) 35, 52, 373
BssT1I CCWWGG 1 cut(s) 767
Bst4CI ACNGT 3 cut(s) 429, 540, 656
Bst6I CTCTTC 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 643, 678
BstDEI CTNAG 1 cut(s) 191
BstF5I GGATG 3 cut(s) 27, 115, 277
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 3 cut(s) 38, 55, 376
BstMAI GTCTC 3 cut(s) 147, 281, 416
BstMBI GATC 3 cut(s) 35, 52, 373
BstNSI RCATGY 3 cut(s) 529, 645, 680
BstSLI GKGCMC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 507
BstV2I GAAGAC 2 cut(s) 611, 702
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BtsCI GGATG 3 cut(s) 27, 115, 277
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 2 cut(s) 643, 678
CfoI GCGC 1 cut(s) 391
CseI GACGC 1 cut(s) 647
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviAII CATG 7 cut(s) 92, 115, 129, 233, 526, 642, 677
CviJI RGCY 3 cut(s) 90, 242, 328
CviKI_1 RGCY 3 cut(s) 90, 242, 328
DdeI CTNAG 1 cut(s) 191
DpnI GATC 3 cut(s) 37, 54, 375
DpnII GATC 3 cut(s) 35, 52, 373
DraI TTTAAA 1 cut(s) 147
DraIII CACNNNGTG 1 cut(s) 731
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
EciI GGCGGA 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 767
Eco57I CTGAAG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 767
EcoT22I ATGCAT 2 cut(s) 85, 553
ErhI CCWWGG 1 cut(s) 767
FaeI CATG 7 cut(s) 95, 118, 132, 236, 529, 645, 680
FatI CATG 7 cut(s) 91, 114, 128, 232, 525, 641, 676
FbaI TGATCA 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 496
FokI GGATG 3 cut(s) 34, 122, 284
Fsp4HI GCNGC 1 cut(s) 496
FspBI CTAG 1 cut(s) 533
FspI TGCGCA 1 cut(s) 390
GlaI GCGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 496
HgaI GACGC 1 cut(s) 647
HhaI GCGC 1 cut(s) 391
Hin1II CATG 7 cut(s) 95, 118, 132, 236, 529, 645, 680
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 1 cut(s) 763
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 40, 172
Hpy188III TCNNGA 4 cut(s) 74, 223, 608, 714
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 766
HpyCH4III ACNGT 3 cut(s) 429, 540, 656
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 7 cut(s) 95, 118, 132, 236, 529, 645, 680
HspAI GCGC 1 cut(s) 389
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 3 cut(s) 35, 52, 373
LmnI GCTCC 4 cut(s) 311, 325, 507, 673
LpnPI CCDG 3 cut(s) 166, 208, 711
Lsp1109I GCAGC 1 cut(s) 507
LweI GCATC 5 cut(s) 12, 193, 376, 471, 538
MaeI CTAG 1 cut(s) 533
MaeIII GTNAC 1 cut(s) 61
MalI GATC 3 cut(s) 37, 54, 375
MboI GATC 3 cut(s) 35, 52, 373
MboII GAAGA 7 cut(s) 368, 395, 425, 610, 611, 702, 772
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 8 cut(s) 26, 201, 226, 280, 360, 583, 633, 660
MmeI TCCRAC 2 cut(s) 390, 480
MnlI CCTC 5 cut(s) 100, 232, 262, 409, 430
Mph1103I ATGCAT 2 cut(s) 85, 553
MroXI GAANNNNTTC 2 cut(s) 363, 570
MseI TTAA 5 cut(s) 29, 146, 204, 522, 542
MslI CAYNNNNRTG 1 cut(s) 681
NdeII GATC 3 cut(s) 35, 52, 373
NlaIII CATG 7 cut(s) 95, 118, 132, 236, 529, 645, 680
NsbI TGCGCA 1 cut(s) 390
NsiI ATGCAT 2 cut(s) 85, 553
NspI RCATGY 3 cut(s) 529, 645, 680
PaeI GCATGC 2 cut(s) 645, 680
PciI ACATGT 1 cut(s) 525
PdmI GAANNNNTTC 2 cut(s) 363, 570
PfeI GAWTC 1 cut(s) 763
PkrI GCNGC 1 cut(s) 497
PscI ACATGT 1 cut(s) 525
PsuI RGATCY 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 5 cut(s) 29, 146, 204, 522, 542
SatI GCNGC 1 cut(s) 496
Sau3AI GATC 3 cut(s) 35, 52, 373
SduI GDGCHC 1 cut(s) 180
SetI ASST 2 cut(s) 330, 777
SfaNI GCATC 5 cut(s) 12, 193, 376, 471, 538
SmiMI CAYNNNNRTG 1 cut(s) 681
SphI GCATGC 2 cut(s) 645, 680
Sse9I AATT 8 cut(s) 26, 201, 226, 280, 360, 583, 633, 660
SsiI CCGC 3 cut(s) 166, 368, 419
SspMI CTAG 1 cut(s) 533
StyI CCWWGG 1 cut(s) 767
TaaI ACNGT 3 cut(s) 429, 540, 656
TaqII GACCGA 1 cut(s) 605
TasI AATT 8 cut(s) 26, 201, 226, 280, 360, 583, 633, 660
TfiI GAWTC 1 cut(s) 763
Tru1I TTAA 5 cut(s) 29, 146, 204, 522, 542
Tru9I TTAA 5 cut(s) 29, 146, 204, 522, 542
TscAI CASTG 1 cut(s) 185
TseI GCWGC 1 cut(s) 495
TspDTI ATGAA 3 cut(s) 276, 396, 611
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 176
XapI RAATTY 2 cut(s) 226, 360
XceI RCATGY 3 cut(s) 529, 645, 680
XmnI GAANNNNTTC 2 cut(s) 363, 570
XspI CTAG 1 cut(s) 533
Zsp2I ATGCAT 2 cut(s) 85, 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.