MD15G1434900.v1.1

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000178
Physical Location & Seq
Forward (+)
53498447 .. 53504995
6549 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1434900.v1.1.491

Sequence Viewer

Length: 2031 bp
ATGGAGATTGATTCAGCTAGTAATTCTACTTCAATCGGGAGCGACTGGTCAGGTGGGGATCAAGACGGGGATCAAGATGTGAGCTCTGTGGATAAGGCAGTGCAAAAATTGCTTAAGTATGTTGAAGAAAGCCGCCAGAGGGAAAAATCGTCCAAGAAGATTGGTCGTGCGCAAACTAAGCAATTGACAGGCTTGGGTTCTTGGAGTAGATTCCCGAATGAGGAAGAGGCGCCTTCTCATAATCGTCCGCAAACTAAGGCATTGACAGGCACGGGTTCTTGGAGTAGATCTAGGAATGAGCAAGAGGCGCCTTCTCATAATCCTGCACAAACTAAGGCATTGACAGGCTTGGGATCTTGGAGTATATCTCGGGATGATCAAGAAGCACCGTCTCATAATCGTGCACAAAATAAGGCATTGACAAGCTTGGGTTCTTGGAATAGATTCTCGAGTGAGCAAGGGGCGCCTTCTCATAATCCTGTGCAAACCACGCCATTGCCAGGCTTGGGTTCTTCAAGTAGATTTCGGAATGGGCAAGAGACACCTTCTCATGATCGCGCGGAAACTACACCATTGGCAGGCTTGAGTTCCTGGATTAGTTTTGAGAATCAGCAAGAGGCTCCTTCTCATGTCCCTCACTTTAACAAGAAAGAATTGAGTGCTTCCCTGGCGGTTATTAAGAGGGTTATGGAAATGGACGCATCTGTACCTTTCAACACTCCTGTGGATCCAGTTGCTATGAGAATGCCTGATTACTTTGATGTCATAGATACACCAATGGATTTTGGAACAATATGCAACCATCTTCAAAATGGTACTAAATATATGAACTCAGAGGATGTGTTCAGGGACGTCCAATACATTTGGAAGAACTGCTGCACCTATTACAATGAGGGTAACTTTGTTTTGGACCTTATGAAGCGGGTGAAGGAGAAATTCATGACATATTGGACAGAAGCTGGTTTGTGCAGTAAAGAACCAGGACCAAGAAGTGTGTTAAAAAGCTCTAATGTGGAGAAAAGGAGGACACGAGGGCCCACCGTTAACCGTATACTAGATCAAGTTCCTTTTGGGGGAAGACTTGAAGTCACTTGGAGGAACCGGAGAGCTGTAGGTGAAAGCTCCAAATTGTTCAAATCAGCATGTACAGCCCTGGTTAGGCAAACCCGGGAGATACCCCTGCAGGTCAAGTCGTGGAAGAGTATCCCTATTGATATTAAAAAGAAGGCATTTGAGCGTATCTTGAAGCGCTTCAAAGTTGAAGATCACATGAGATGGGTGTTGGAACAGATTCATAGATCCTACCACAGTTATCGGCGTTACCTCAAGAGGTTGTGGTATGATACATGTGGGACAATTGAGGAAGCACGGCAAAACATACCACCAAGTGTCGCTGAGGATGATTGGCAGTATCTTACAGACTTGTGGAGCTCACCTGAATGGAAGGCATGGAGTAAGAAAAACAAGGAGAATGGTTTCAAAGAAAATAACTTAATTCACACTTGTGGCTCCAAGAGTTTCTCGCAAATCTACGAGGAAGAGAGAAAGAAGACTGGAAATGACCCTGGTCGCATACGTCTATGGGAACTCACCCATTTGCGGTCTGATGGAAAAGCTGCCCATCCAGCTGCAGAGGAGGCATTGTCAAAGCTCAAGGCACTTTATGCTGAAGTGTCTGCGGGGAACTTGCATATGACTGAAGACGAGATTTATGAAAAGGTTTTTGGACCTGAGCGTCCGCAGAGGGAACGTGGTATAACCTCCAAAGAGTTATGGGGTGAACTCAGAAAGCAACTTGACGAATCAAAGCAGCGACAAGAGGAGTCGGAACAAAGATGTGTTGCTGAGGTACAGGGTTTAAAAGAGCAACTTGGTAGAGTTGAGGGTTTGTTTTCAGAGCAAATGAATCGGTTTGAAGGTTTACTAGTACAGTTGGCGAGTCAAGTTAGTTCTCCTGTGCAGACAGAGAGGCCTACTGTAAATCCACCCTCCCAAAGAGGGCGGCCGCGGACTGTCCGACCTAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

677

Amino Acids

77.2

Weight (kDa)

9.13

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 224 - 305 1.2e-13 Bromodomain
Transposase_24 PF03004 466 - 588 1.4e-20 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1734
AatII GACGTC 1 cut(s) 855
Acc16I TGCGCA 1 cut(s) 171
Acc36I ACCTGC 1 cut(s) 1174
AccB1I GGYRCC 3 cut(s) 229, 307, 463
AccI GTMKAC 1 cut(s) 1051
AccII CGCG 3 cut(s) 558, 560, 2008
AclWI GGATC 6 cut(s) 66, 78, 361, 722, 735, 1293
AcoI YGGCCR 1 cut(s) 2003
AcsI RAATTY 1 cut(s) 935
AcuI CTGAAG 2 cut(s) 1689, 1719
AcyI GRCGYC 4 cut(s) 230, 308, 464, 852
AdeI CACNNNGTG 1 cut(s) 1388
AfaI GTAC 5 cut(s) 708, 817, 1147, 1851, 1929
AfeI AGCGCT 1 cut(s) 1250
AfiI CCNNNNNNNGG 9 cut(s) 139, 220, 500, 506, 578, 1073, 1158, 1599, 1998
AflII CTTAAG 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 1346
AhdI GACNNNNNGTC 1 cut(s) 1085
AhlI ACTAGT 1 cut(s) 1924
AjnI CCWGG 6 cut(s) 499, 590, 666, 979, 1152, 1564
AjuI GAANNNNNNNTTGG 2 cut(s) 1707, 1739
AleI CACNNNNGTG 2 cut(s) 722, 1503
Alw21I GWGCWC 3 cut(s) 86, 406, 1433
Alw26I GTCTC 2 cut(s) 396, 533
Alw44I GTGCAC 1 cut(s) 402
AlwI GGATC 6 cut(s) 66, 78, 361, 722, 735, 1293
AlwNI CAGNNNCTG 1 cut(s) 959
Ama87I CYCGRG 3 cut(s) 369, 448, 1167
Aor51HI AGCGCT 1 cut(s) 1250
AoxI GGCC 3 cut(s) 1034, 1970, 2003
ApaI GGGCCC 1 cut(s) 1038
ApaLI GTGCAC 1 cut(s) 402
ApeKI GCWGC 4 cut(s) 876, 1616, 1628, 1810
ApoI RAATTY 1 cut(s) 935
Asp700I GAANNNNTTC 4 cut(s) 443, 1250, 1290, 1475
AspLEI GCGC 6 cut(s) 172, 232, 310, 466, 560, 1251
AspS9I GGNCC 5 cut(s) 910, 983, 1034, 1035, 1727
AsuC2I CCSGG 2 cut(s) 1168, 1169
AsuHPI GGTGA 5 cut(s) 937, 1127, 1425, 1582, 1790
AvaI CYCGRG 3 cut(s) 369, 448, 1167
AvaII GGWCC 3 cut(s) 910, 983, 1727
BaeGI GKGCMC 2 cut(s) 406, 1038
BamHI GGATCC 1 cut(s) 727
BanI GGYRCC 3 cut(s) 229, 307, 463
BanII GRGCYC 3 cut(s) 86, 1038, 1433
BarI GAAGNNNNNNTAC 2 cut(s) 13, 45
BauI CACGAG 1 cut(s) 1029
BbsI GAAGAC 3 cut(s) 1084, 1556, 1707
Bbv12I GWGCWC 3 cut(s) 86, 406, 1433
BbvCI CCTCAGC 2 cut(s) 1395, 1845
BbvI GCAGC 4 cut(s) 863, 1603, 1615, 1822
BccI CCATC 4 cut(s) 810, 1269, 1601, 1629
BceAI ACGGC 1 cut(s) 1385
BcgI CGANNNNNNTGC 2 cut(s) 1889, 1923
BciT130I CCWGG 6 cut(s) 501, 592, 668, 981, 1154, 1566
BciVI GTATCC 1 cut(s) 1214
BclI TGATCA 1 cut(s) 376
BcnI CCSGG 2 cut(s) 1168, 1169
BcoDI GTCTC 2 cut(s) 396, 533
BcuI ACTAGT 1 cut(s) 1924
BfaI CTAG 5 cut(s) 18, 291, 1055, 1925, 2022
BfmI CTRYAG 3 cut(s) 1110, 1181, 1629
BfoI RGCGCY 4 cut(s) 233, 311, 467, 1252
BfrI CTTAAG 1 cut(s) 113
BfuAI ACCTGC 1 cut(s) 1174
BfuI GTATCC 1 cut(s) 1214
BglII AGATCT 1 cut(s) 287
BisI GCNGC 7 cut(s) 133, 877, 1617, 1629, 1811, 2003, 2006
BlsI GCNGC 7 cut(s) 134, 878, 1618, 1630, 1812, 2004, 2007
Bme1390I CCNGG 8 cut(s) 501, 592, 668, 981, 1154, 1168, 1169, 1566
Bme18I GGWCC 3 cut(s) 910, 983, 1727
BmeRI GACNNNNNGTC 1 cut(s) 1085
BmeT110I CYCGRG 3 cut(s) 369, 448, 1167
BmgT120I GGNCC 5 cut(s) 910, 983, 1034, 1035, 1727
BmiI GGNNCC 8 cut(s) 231, 309, 465, 621, 729, 1036, 1100, 1510
BmrFI CCNGG 8 cut(s) 501, 592, 668, 981, 1154, 1168, 1169, 1566
BmsI GCATC 1 cut(s) 710
BoxI GACNNNNGTC 1 cut(s) 1566
BpiI GAAGAC 3 cut(s) 1084, 1556, 1707
BplI GAGNNNNNCTC 2 cut(s) 352, 384
Bpu10I CCTNAGC 3 cut(s) 1395, 1731, 1845
BpuEI CTTGAG 3 cut(s) 604, 1310, 1637
BpuMI CCSGG 2 cut(s) 1168, 1169
BsaHI GRCGYC 4 cut(s) 230, 308, 464, 852
BsaJI CCNNGG 5 cut(s) 666, 1152, 1167, 1564, 2006
BsaWI WCCGGW 1 cut(s) 1101
BsaXI ACNNNNNCTCC 2 cut(s) 1628, 1658
Bsc4I CCNNNNNNNGG 9 cut(s) 139, 220, 500, 506, 578, 1073, 1158, 1599, 1998
Bse1I ACTGG 3 cut(s) 50, 731, 1558
Bse3DI GCAATG 1 cut(s) 494
BseBI CCWGG 6 cut(s) 501, 592, 668, 981, 1154, 1566
BseDI CCNNGG 5 cut(s) 666, 1152, 1167, 1564, 2006
BseGI GGATG 4 cut(s) 379, 844, 1405, 1621
BseLI CCNNNNNNNGG 9 cut(s) 139, 220, 500, 506, 578, 1073, 1158, 1599, 1998
BseMI GCAATG 1 cut(s) 494
BseMII CTCAG 5 cut(s) 846, 1386, 1722, 1798, 1836
BseNI ACTGG 3 cut(s) 50, 731, 1558
BseRI GAGGAG 2 cut(s) 1649, 1835
BseSI GKGCMC 2 cut(s) 406, 1038
BseX3I CGGCCG 1 cut(s) 2003
BseXI GCAGC 4 cut(s) 863, 1603, 1615, 1822
BsgI GTGCAG 4 cut(s) 309, 862, 988, 1979
Bsh1236I CGCG 3 cut(s) 558, 560, 2008
Bsh1285I CGRYCG 1 cut(s) 2006
BshFI GGCC 3 cut(s) 1036, 1972, 2005
BshNI GGYRCC 3 cut(s) 229, 307, 463
BsiEI CGRYCG 1 cut(s) 2006
BsiHKAI GWGCWC 3 cut(s) 86, 406, 1433
BsiHKCI CYCGRG 3 cut(s) 369, 448, 1167
BsiSI CCGG 2 cut(s) 1102, 1168
BslFI GGGAC 3 cut(s) 617, 863, 1366
BslI CCNNNNNNNGG 9 cut(s) 139, 220, 500, 506, 578, 1073, 1158, 1599, 1998
BsmAI GTCTC 2 cut(s) 396, 533
BsmBI CGTCTC 1 cut(s) 396
BsmFI GGGAC 3 cut(s) 617, 863, 1366
BsmI GAATGC 1 cut(s) 750
BsnI GGCC 3 cut(s) 1036, 1972, 2005
BsoBI CYCGRG 3 cut(s) 369, 448, 1167
Bsp120I GGGCCC 1 cut(s) 1034
Bsp1286I GDGCHC 4 cut(s) 86, 406, 1038, 1433
Bsp1407I TGTACA 1 cut(s) 1145
BspANI GGCC 3 cut(s) 1036, 1972, 2005
BspCNI CTCAG 5 cut(s) 845, 1387, 1723, 1797, 1837
BspFNI CGCG 3 cut(s) 558, 560, 2008
BspHI TCATGA 2 cut(s) 550, 939
BspLI GGNNCC 8 cut(s) 231, 309, 465, 621, 729, 1036, 1100, 1510
BspMAI CTGCAG 2 cut(s) 1185, 1633
BspMI ACCTGC 1 cut(s) 1174
BspPI GGATC 6 cut(s) 66, 78, 361, 722, 735, 1293
BspT107I GGYRCC 3 cut(s) 229, 307, 463
BspTI CTTAAG 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 494
BsrGI TGTACA 1 cut(s) 1145
BsrI ACTGG 3 cut(s) 50, 731, 1558
BssECI CCNNGG 5 cut(s) 666, 1152, 1167, 1564, 2006
BssNAI GTATAC 1 cut(s) 1052
BssNI GRCGYC 4 cut(s) 230, 308, 464, 852
BssSI CACGAG 1 cut(s) 1029
Bst1107I GTATAC 1 cut(s) 1052
Bst2BI CACGAG 1 cut(s) 1029
Bst2UI CCWGG 6 cut(s) 501, 592, 668, 981, 1154, 1566
Bst4CI ACNGT 7 cut(s) 390, 1042, 1049, 1310, 1932, 1978, 2014
Bst6I CTCTTC 3 cut(s) 219, 1193, 1533
BstACI GRCGYC 4 cut(s) 230, 308, 464, 852
BstAFI CTTAAG 1 cut(s) 113
BstAPI GCANNNNNTGC 2 cut(s) 109, 1664
BstAUI TGTACA 1 cut(s) 1145
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 8 cut(s) 177, 255, 333, 832, 1395, 1731, 1784, 1845
BstDSI CCRYGG 1 cut(s) 2006
BstF5I GGATG 4 cut(s) 379, 844, 1405, 1621
BstFNI CGCG 3 cut(s) 558, 560, 2008
BstH2I RGCGCY 4 cut(s) 233, 311, 467, 1252
BstHHI GCGC 6 cut(s) 172, 232, 310, 466, 560, 1251
BstMAI GTCTC 2 cut(s) 396, 533
BstMCI CGRYCG 1 cut(s) 2006
BstNI CCWGG 6 cut(s) 501, 592, 668, 981, 1154, 1566
BstNSI RCATGY 2 cut(s) 1146, 1350
BstPAI GACNNNNGTC 1 cut(s) 1566
BstSCI CCNGG 8 cut(s) 499, 590, 666, 979, 1152, 1166, 1167, 1564
BstSFI CTRYAG 3 cut(s) 1110, 1181, 1629
BstSLI GKGCMC 2 cut(s) 406, 1038
BstUI CGCG 3 cut(s) 558, 560, 2008
BstV1I GCAGC 4 cut(s) 863, 1603, 1615, 1822
BstV2I GAAGAC 3 cut(s) 1084, 1556, 1707
BstX2I RGATCY 4 cut(s) 287, 353, 727, 1298
BstYI RGATCY 4 cut(s) 287, 353, 727, 1298
BstZ17I GTATAC 1 cut(s) 1052
BstZI CGGCCG 1 cut(s) 2003
BsuI GTATCC 1 cut(s) 1214
BsuRI GGCC 3 cut(s) 1036, 1972, 2005
BtgI CCRYGG 1 cut(s) 2006
BtsCI GGATG 4 cut(s) 379, 844, 1405, 1621
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
BveI ACCTGC 1 cut(s) 1174
Cac8I GCNNGC 1 cut(s) 580
CaiI CAGNNNCTG 1 cut(s) 959
CciI TCATGA 2 cut(s) 550, 939
CciNI GCGGCCGC 1 cut(s) 2003
CfoI GCGC 6 cut(s) 172, 232, 310, 466, 560, 1251
Cfr13I GGNCC 5 cut(s) 910, 983, 1034, 1035, 1727
Cfr42I CCGCGG 1 cut(s) 2009
Cfr9I CCCGGG 1 cut(s) 1167
CseI GACGC 2 cut(s) 707, 1724
Csp6I GTAC 5 cut(s) 707, 816, 1146, 1850, 1928
CviAII CATG 7 cut(s) 551, 629, 940, 1143, 1270, 1347, 1449
CviQI GTAC 5 cut(s) 707, 816, 1146, 1850, 1928
DdeI CTNAG 8 cut(s) 177, 255, 333, 832, 1395, 1731, 1784, 1845
DinI GGCGCC 3 cut(s) 231, 309, 465
DraI TTTAAA 1 cut(s) 1860
DraIII CACNNNGTG 1 cut(s) 1388
DrdI GACNNNNNNGTC 1 cut(s) 1734
DriI GACNNNNNGTC 1 cut(s) 1085
DseDI GACNNNNNNGTC 1 cut(s) 1734
EaeI YGGCCR 1 cut(s) 2003
EagI CGGCCG 1 cut(s) 2003
Eam1104I CTCTTC 3 cut(s) 219, 1193, 1533
Eam1105I GACNNNNNGTC 1 cut(s) 1085
EarI CTCTTC 3 cut(s) 219, 1193, 1533
Ecl136II GAGCTC 2 cut(s) 84, 1431
EclXI CGGCCG 1 cut(s) 2003
Eco147I AGGCCT 1 cut(s) 1972
Eco24I GRGCYC 3 cut(s) 86, 1038, 1433
Eco47I GGWCC 3 cut(s) 910, 983, 1727
Eco47III AGCGCT 1 cut(s) 1250
Eco52I CGGCCG 1 cut(s) 2003
Eco53kI GAGCTC 2 cut(s) 84, 1431
Eco57I CTGAAG 2 cut(s) 1689, 1719
Eco88I CYCGRG 3 cut(s) 369, 448, 1167
EcoICRI GAGCTC 2 cut(s) 84, 1431
EcoO109I RGGNCCY 1 cut(s) 1034
EcoRII CCWGG 6 cut(s) 499, 590, 666, 979, 1152, 1564
EcoT38I GRGCYC 3 cut(s) 86, 1038, 1433
EgeI GGCGCC 3 cut(s) 231, 309, 465
EheI GGCGCC 3 cut(s) 231, 309, 465
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 7 cut(s) 554, 632, 943, 1146, 1273, 1350, 1452
FalI AAGNNNNNCTT 2 cut(s) 1854, 1886
FaqI GGGAC 3 cut(s) 617, 863, 1366
FatI CATG 7 cut(s) 550, 628, 939, 1142, 1269, 1346, 1448
FauI CCCGC 2 cut(s) 915, 1672
FauNDI CATATG 1 cut(s) 1692
FbaI TGATCA 1 cut(s) 376
FblI GTMKAC 1 cut(s) 1051
Fnu4HI GCNGC 7 cut(s) 133, 877, 1617, 1629, 1811, 2003, 2006
FokI GGATG 4 cut(s) 386, 851, 1412, 1608
FriOI GRGCYC 3 cut(s) 86, 1038, 1433
Fsp4HI GCNGC 7 cut(s) 133, 877, 1617, 1629, 1811, 2003, 2006
FspBI CTAG 5 cut(s) 18, 291, 1055, 1925, 2022
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 6 cut(s) 171, 231, 309, 465, 559, 1250
GluI GCNGC 7 cut(s) 133, 877, 1617, 1629, 1811, 2003, 2006
HaeII RGCGCY 4 cut(s) 233, 311, 467, 1252
HaeIII GGCC 3 cut(s) 1036, 1972, 2005
HapII CCGG 2 cut(s) 1102, 1168
HgaI GACGC 2 cut(s) 707, 1724
HhaI GCGC 6 cut(s) 172, 232, 310, 466, 560, 1251
Hin1I GRCGYC 4 cut(s) 230, 308, 464, 852
Hin1II CATG 7 cut(s) 554, 632, 943, 1146, 1273, 1350, 1452
Hin6I GCGC 6 cut(s) 170, 230, 308, 464, 558, 1249
HinP1I GCGC 6 cut(s) 170, 230, 308, 464, 558, 1249
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HindIII AAGCTT 1 cut(s) 424
HinfI GANTC 9 cut(s) 11, 210, 444, 607, 1291, 1802, 1823, 1906, 1939
HpaI GTTAAC 1 cut(s) 1045
HpaII CCGG 2 cut(s) 1102, 1168
HphI GGTGA 5 cut(s) 937, 1127, 1425, 1582, 1790
Hpy166II GTNNAC 5 cut(s) 404, 1045, 1052, 1781, 1922
Hpy188I TCNGA 7 cut(s) 528, 835, 1606, 1787, 1828, 1897, 2018
Hpy8I GTNNAC 5 cut(s) 404, 1045, 1052, 1781, 1922
HpyAV CCTTC 9 cut(s) 243, 321, 477, 555, 633, 922, 1219, 1438, 1910
HpyCH4III ACNGT 7 cut(s) 390, 1042, 1049, 1310, 1932, 1978, 2014
HpyCH4IV ACGT 3 cut(s) 852, 1576, 1750
HpyF3I CTNAG 8 cut(s) 177, 255, 333, 832, 1395, 1731, 1784, 1845
HpySE526I ACGT 3 cut(s) 852, 1576, 1750
Hsp92I GRCGYC 4 cut(s) 230, 308, 464, 852
Hsp92II CATG 7 cut(s) 554, 632, 943, 1146, 1273, 1350, 1452
HspAI GCGC 6 cut(s) 170, 230, 308, 464, 558, 1249
KasI GGCGCC 3 cut(s) 229, 307, 463
Ksp22I TGATCA 1 cut(s) 376
KspAI GTTAAC 1 cut(s) 1045
KspI CCGCGG 1 cut(s) 2009
LmnI GCTCC 5 cut(s) 39, 625, 1127, 1428, 1514
Lsp1109I GCAGC 4 cut(s) 863, 1603, 1615, 1822
LweI GCATC 1 cut(s) 710
MaeI CTAG 5 cut(s) 18, 291, 1055, 1925, 2022
MaeII ACGT 3 cut(s) 852, 1576, 1750
MaeIII GTNAC 3 cut(s) 896, 1087, 1319
MfeI CAATTG 2 cut(s) 182, 1356
MflI RGATCY 4 cut(s) 287, 353, 727, 1298
MhlI GDGCHC 4 cut(s) 86, 406, 1038, 1433
MluCI AATT 8 cut(s) 22, 107, 182, 653, 935, 1127, 1356, 1494
Mly113I GGCGCC 3 cut(s) 230, 308, 464
MlyI GAGTC 2 cut(s) 1832, 1948
MmeI TCCRAC 2 cut(s) 1263, 1806
MroXI GAANNNNTTC 4 cut(s) 443, 1250, 1290, 1475
MseI TTAA 8 cut(s) 114, 642, 678, 998, 1044, 1218, 1493, 1859
MslI CAYNNNNRTG 4 cut(s) 399, 722, 1438, 1503
MspA1I CMGCKG 2 cut(s) 1628, 2008
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 2 cut(s) 1102, 1168
MspR9I CCNGG 8 cut(s) 501, 592, 668, 981, 1154, 1168, 1169, 1566
MunI CAATTG 2 cut(s) 182, 1356
Mva1269I GAATGC 1 cut(s) 750
MvaI CCWGG 6 cut(s) 501, 592, 668, 981, 1154, 1566
MvnI CGCG 3 cut(s) 558, 560, 2008
NarI GGCGCC 3 cut(s) 230, 308, 464
NciI CCSGG 2 cut(s) 1168, 1169
NdeI CATATG 1 cut(s) 1692
NlaIII CATG 7 cut(s) 554, 632, 943, 1146, 1273, 1350, 1452
NlaIV GGNNCC 8 cut(s) 231, 309, 465, 621, 729, 1036, 1100, 1510
NmuCI GTSAC 1 cut(s) 1087
NotI GCGGCCGC 1 cut(s) 2003
NsbI TGCGCA 1 cut(s) 171
NspI RCATGY 2 cut(s) 1146, 1350
OliI CACNNNNGTG 2 cut(s) 722, 1503
PaeR7I CTCGAG 1 cut(s) 448
PagI TCATGA 2 cut(s) 550, 939
PceI AGGCCT 1 cut(s) 1972
PciI ACATGT 1 cut(s) 1346
PctI GAATGC 1 cut(s) 750
PdmI GAANNNNTTC 4 cut(s) 443, 1250, 1290, 1475
PfeI GAWTC 7 cut(s) 11, 210, 444, 607, 1291, 1802, 1906
PfoI TCCNGGA 1 cut(s) 590
PkrI GCNGC 7 cut(s) 134, 878, 1618, 1630, 1812, 2004, 2007
PleI GAGTC 2 cut(s) 1831, 1947
PluTI GGCGCC 3 cut(s) 233, 311, 467
PpsI GAGTC 2 cut(s) 1831, 1947
PscI ACATGT 1 cut(s) 1346
PshAI GACNNNNGTC 1 cut(s) 1566
Psp124BI GAGCTC 2 cut(s) 86, 1433
Psp6I CCWGG 6 cut(s) 499, 590, 666, 979, 1152, 1564
PspGI CCWGG 6 cut(s) 499, 590, 666, 979, 1152, 1564
PspN4I GGNNCC 8 cut(s) 231, 309, 465, 621, 729, 1036, 1100, 1510
PspOMI GGGCCC 1 cut(s) 1034
PspPI GGNCC 5 cut(s) 910, 983, 1034, 1035, 1727
PstI CTGCAG 2 cut(s) 1185, 1633
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 4 cut(s) 287, 353, 727, 1298
PvuII CAGCTG 1 cut(s) 1628
RsaI GTAC 5 cut(s) 708, 817, 1147, 1851, 1929
RsaNI GTAC 5 cut(s) 707, 816, 1146, 1850, 1928
RseI CAYNNNNRTG 4 cut(s) 399, 722, 1438, 1503
SacI GAGCTC 2 cut(s) 86, 1433
SacII CCGCGG 1 cut(s) 2009
SaqAI TTAA 8 cut(s) 114, 642, 678, 998, 1044, 1218, 1493, 1859
SatI GCNGC 7 cut(s) 133, 877, 1617, 1629, 1811, 2003, 2006
Sau96I GGNCC 5 cut(s) 910, 983, 1034, 1035, 1727
SbfI CCTGCAGG 1 cut(s) 1185
SchI GAGTC 2 cut(s) 1832, 1948
ScrFI CCNGG 8 cut(s) 501, 592, 668, 981, 1154, 1168, 1169, 1566
SdaI CCTGCAGG 1 cut(s) 1185
SduI GDGCHC 4 cut(s) 86, 406, 1038, 1433
SfaNI GCATC 1 cut(s) 710
SfcI CTRYAG 3 cut(s) 1110, 1181, 1629
SfoI GGCGCC 3 cut(s) 231, 309, 465
Sfr274I CTCGAG 1 cut(s) 448
Sfr303I CCGCGG 1 cut(s) 2009
SgrBI CCGCGG 1 cut(s) 2009
SinI GGWCC 3 cut(s) 910, 983, 1727
SlaI CTCGAG 1 cut(s) 448
SmaI CCCGGG 1 cut(s) 1169
SmiMI CAYNNNNRTG 4 cut(s) 399, 722, 1438, 1503
SmlI CTYRAG 5 cut(s) 113, 448, 583, 1325, 1652
SmoI CTYRAG 5 cut(s) 113, 448, 583, 1325, 1652
SpeI ACTAGT 1 cut(s) 1924
Sse8387I CCTGCAGG 1 cut(s) 1185
Sse9I AATT 8 cut(s) 22, 107, 182, 653, 935, 1127, 1356, 1494
SseBI AGGCCT 1 cut(s) 1972
SspDI GGCGCC 3 cut(s) 229, 307, 463
SspMI CTAG 5 cut(s) 18, 291, 1055, 1925, 2022
SstI GAGCTC 2 cut(s) 86, 1433
StuI AGGCCT 1 cut(s) 1972
StyD4I CCNGG 8 cut(s) 499, 590, 666, 979, 1152, 1166, 1167, 1564
TaaI ACNGT 7 cut(s) 390, 1042, 1049, 1310, 1932, 1978, 2014
TaiI ACGT 3 cut(s) 855, 1579, 1753
TaqI TCGA 1 cut(s) 449
TasI AATT 8 cut(s) 22, 107, 182, 653, 935, 1127, 1356, 1494
TatI WGTACW 2 cut(s) 1145, 1927
TauI GCSGC 3 cut(s) 135, 2005, 2008
TfiI GAWTC 7 cut(s) 11, 210, 444, 607, 1291, 1802, 1906
Tru1I TTAA 8 cut(s) 114, 642, 678, 998, 1044, 1218, 1493, 1859
Tru9I TTAA 8 cut(s) 114, 642, 678, 998, 1044, 1218, 1493, 1859
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 1087
TseI GCWGC 4 cut(s) 876, 1616, 1628, 1810
Tsp45I GTSAC 1 cut(s) 1087
TspDTI ATGAA 6 cut(s) 842, 928, 932, 1283, 1728, 1919
TspMI CCCGGG 1 cut(s) 1167
TspRI CASTG 1 cut(s) 105
Vha464I CTTAAG 1 cut(s) 113
VneI GTGCAC 1 cut(s) 402
VpaK11BI GGWCC 3 cut(s) 910, 983, 1727
XapI RAATTY 1 cut(s) 935
XceI RCATGY 2 cut(s) 1146, 1350
XcmI CCANNNNNNNNNTGG 1 cut(s) 809
XhoI CTCGAG 1 cut(s) 448
XmaI CCCGGG 1 cut(s) 1167
XmiI GTMKAC 1 cut(s) 1051
XmnI GAANNNNTTC 4 cut(s) 443, 1250, 1290, 1475
XspI CTAG 5 cut(s) 18, 291, 1055, 1925, 2022
ZraI GACGTC 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.