pycom15g38370

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000178
Physical Location & Seq
Forward (+)
38168438 .. 38181006
12569 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g38370.7

Sequence Viewer

Length: 3333 bp
ATGAGGACGAAACAACCGTGCAGGGGAAGAGGAAGGCCACGGAAAACGCCAAATGTGGTGAGTGAAAGAGTGGTGAGTGAGAGGGTGGTCAGCGAGCGAGTGGTCAATGAGAACGAAAACGCATTCTTGAATTTTGTAAATCACAATACTCACAATGTTGAAGAAGGAAATATTCTTGAGTGTTATGAATCTAGTCGCGAAGACCGTGATGATGAGGAATTTAACCCTGAAATGGAGATTGATTCAGCTAGTAATTCTACTTCAATCGGGAGCGACTGGTCAGGTGGGGATCAAGACGGGGATCAAGATGTGAGCTCTGTGGATAAGGCAGTGCAAAAATTGCTTAAGTATGTTGAAGAAAGCCGCCAGAGGGAAAAATTGTCCAAGAAGATTGATCGTGCGCAAACTAAGCAATTGACAGGCTTGGGTTCTCGGAATAGATTCCCGAATGAGGAAGAGGCGCCTTCTCATAATCTTCCGCAAACTAAGGCATTGACAGGCACGGGTTCTTGGAGTAGATCTAGGAATGAGCAAGAGGCGCCTTCTCATAATCCTGCGAAAACTAAGGCATTGACAGGCTTGGGATCTTGGAGTATATCTCAGGATGAGCAAGAAGCACCGTCTCATAATCGTGCACAAAATAAGGCATTGACAAGCTTGGGTTCTTGGAATAGATTCTCAAGTGAGCAAGGGGCGCCTTCTCATAATCCTGTGCAAACCACTCCGTTGCCAGGCTTGGGTTCTTCAAATAGATTTCGGAATGGGCAAGAGACACCTTCTCATGATCGCGCAGAAACTACACCATTGACAGGCTTGAGTTCCTGGATTAGTTTTGAGAATCAGCAAGAGGTGCCTTCTCATGTTCCTCACTTTAACAAGAAAGAATTGAGTGCTTCCCTGGTGGTTATTAAGAGGGTTATGGAAATGGATGCATCTGTACCTTTCAACGCTCCTGTGGATCCAGTTGCTATGAGAATGCCTGATTACTTTGATGTCATAGATACACCAATGGATTTTGGAACAATATGCAACCATCTTCAAAATGGTACTAAATATATGAACTCAGAGGATGTGTTCAGGGACGTCCAATACATTTGGAAGAACTGTTGCACCTATTACAATGAGGGTAACTTTGTTTTGGACCTTATGAAACGGGTGAAGGAGAAATTCATGACATATTGGACAGAAGCTGGTTTGTGCAGTAAAGAACCAGGAACAAGAAGTGTCTTAAAAAGCTCTAATGTGGAGAAAAGGAGGACACGAGGGCCCACTGTTAACCGTATACTAGATCAAGTTCCTTTTGGGGGAAGACTTGAAGTCACCTGGAGGAACCGGAGAGCTGTAGGGGAAAGCTCCAAATTGTTCAAATCAGCGTGTACAGCCCTGGTTAGGCAAACCCGGGAGATACCCCTACAGGTCAAGTCGTGGAAGAGTATCCCAATTGATATTAAAAAGAAGGCATTTGAGCGTATCTTGAAGCGCTTCAAAGTTGAAGATCACATGAGATGGGTGTTGGAACAGATTCATAGATCCTACCACAGTTATCGGCGTTACCTCAAGAGGTTGTGGTATGATACATGTGGGACAATTGAGGAAGCACTGCAAAACGTACCACCAAGTGTCGCTGAGGATGATTGGCAGTATCTTACAGACTTATGGAGCTCACCTGAATGGAAGGCATGGAGTAAGAAAAACAAGGAGAATGGTTTCAAAGAAAATAACTTAATTCACACTTGTGGCTCCAAGAGTTTCTCGCAAATCTACGAGGAAGAGAGAAAGAAGACGGGAAATGACCCTGGTCGCATACGTCTATGGGAACTCACCCATTTGCGGTCTGATGGAAAAGCTGCCCATCCAGCTGCAGAGGAGGCATTGTCAAAGCTCAAGGCACTTTATGCTGAAGTGTCTACGGGGAACTTGCATATGACTGAAGACGAGATTTATGAAAAGGTTTTTGGACCTGAGCGTCCGCAGAGGGAACGTGGTATAACCTCCAAAGAGTTATGGGGTGAACTCAGAAAGCAACTTGACGAATCAAAGCAGCGACAAGAGGAGTCGGAACAAAGATGTGTTGCTGAGGTACAGGGTTTAAAAGAGCAACTTGGTAGAGTTGAGGGTTTGTTTTCAGAGCAAATGAATCGGTTTGAAGGTTTACTAGTACAGTTGGCGAGTCAAGTTAGTTCCCCTGTGCAGACAGAGAGGCCTACTGTAAATCCACCCTCCCAAAGAGTTAGTCGGAAACAAGCGTGCAGGGGGAGAGGACGGCCGCGAAAGAACCCAAATGTGGTGAGTGAAAGAGTGGTGAGTGAGAGGGTGGTGAGTGAGAGAGTGGTCAATGAGAGAGAAAATGCTTTCTTGAATTTTGTAAGTCACAATGTTGAAGAAGGAAATAATATTCTTGAGTATTATAAAACTGATGATGAGGACCGCAATGATGAGGAATTTAACCCCGAATTGGAGATTGATTCGGGGAGTGATTCTTCTTCGATGAGGAGTGAATGGTCAGATGGGGATCAAAATGTGAGCTCTTTGGATAGGACAGTGCAGAACTTGCTTAAGAGGTATGGTGAAGTGAATCACCAGATGGCAAACTCATCGAAGCAGATTGATGGTGCGCAAGTGAGTCCATTGGCAGTCTCGGGTTCTAGCTGTAGGTTCCAGAATGAGCAAGAATCGCCTACACATGAACCTCGCTCTAACAAGAAAGAATTGGGTGCTGCCCTTGCGGTTATTAGGAAAGTTATGAAAATGGATGCAGCTGTACCTTTCAACATTCCCGTGGATCCAATAGCTCTGAGGTTACCTGATTACTTTGATGTCATAGAAACACCAATGGATTTTGGAACAATTTGCAACCATCTTCAAAATGGTACAAAGTATACAAACTCAGAGGATGTATTCAAGGACGTCCAATACATTTGGGAGAACTGCACCAACTATTACAGTGAGGGTAACTTTCTTTTGGACCTTATGAAACGGGTGAAGGAGAAATTCCTGAAATATTGGGCAGCTGCTGGTTTGTGTAGTAAAGAATGTGGGACAAGTAATGTTTTACCAAGCTCTAATGTGGGGAAAAGGAAGACACGAGGACCTACCCGTAACCTTAAACTAGCTCAAATTCCTCCCGGAGAAAGATTCGAAATCAGCTGGAAGAACCGGAGGGCCGTAGGTGAAGGCTCCACGTTTTTCAAATCAGAGTGTACAGCCCTGGTTAGGCAAACCCGGGAGATACCCCTACAAGTCAAGTCATGGAAGGAAATCCCATTTGATATTAAAAAGAAGGCATTTGAACATGTCTTGAAGCGTTTCAAGGTTGAAGATCGATCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

1111

Amino Acids

126.97

Weight (kDa)

8.23

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2409
AasI GACNNNNNNGTC 1 cut(s) 1965
AatII GACGTC 2 cut(s) 1086, 2910
Acc16I TGCGCA 2 cut(s) 402, 2616
AccB1I GGYRCC 4 cut(s) 460, 538, 694, 850
AccI GTMKAC 3 cut(s) 1282, 1907, 2879
AccII CGCG 3 cut(s) 198, 789, 2269
AciI CCGC 7 cut(s) 364, 479, 1831, 1970, 2267, 2428, 2726
AclWI GGATC 9 cut(s) 297, 309, 592, 953, 966, 1524, 2520, 2777, 2790
AcoI YGGCCR 1 cut(s) 2264
AcsI RAATTY 7 cut(s) 130, 218, 1166, 2359, 2441, 2990, 3117
AcuI CTGAAG 2 cut(s) 1920, 1950
AcyI GRCGYC 5 cut(s) 461, 539, 695, 1083, 2907
AdeI CACNNNGTG 1 cut(s) 1619
AfaI GTAC 9 cut(s) 939, 1048, 1378, 1611, 2082, 2160, 2763, 2872, 3202
AfeI AGCGCT 1 cut(s) 1481
AflII CTTAAG 2 cut(s) 344, 2555
AflIII ACRYGT 2 cut(s) 1577, 3292
AhdI GACNNNNNGTC 1 cut(s) 1316
AhlI ACTAGT 1 cut(s) 2155
AjnI CCWGG 8 cut(s) 730, 821, 897, 1210, 1322, 1383, 1795, 3207
AjuI GAANNNNNNNTTGG 2 cut(s) 1938, 1970
AleI CACNNNNGTG 1 cut(s) 1734
Alw21I GWGCWC 4 cut(s) 317, 637, 1664, 2528
Alw26I GTCTC 3 cut(s) 627, 764, 2641
Alw44I GTGCAC 1 cut(s) 633
AlwI GGATC 9 cut(s) 297, 309, 592, 953, 966, 1524, 2520, 2777, 2790
AlwNI CAGNNNCTG 2 cut(s) 1190, 3014
Ama87I CYCGRG 3 cut(s) 1398, 2638, 3222
Aor51HI AGCGCT 1 cut(s) 1481
AoxI GGCC 5 cut(s) 35, 1265, 2201, 2264, 3162
ApaI GGGCCC 1 cut(s) 1269
ApaLI GTGCAC 1 cut(s) 633
ApeKI GCWGC 7 cut(s) 1847, 1859, 2041, 2717, 2756, 3008, 3011
ApoI RAATTY 7 cut(s) 130, 218, 1166, 2359, 2441, 2990, 3117
ArsI GACNNNNNNTTYG 2 cut(s) 2218, 2250
Asp700I GAANNNNTTC 6 cut(s) 440, 674, 1481, 1521, 1706, 3305
AspLEI GCGC 7 cut(s) 403, 463, 541, 697, 791, 1482, 2617
AspS9I GGNCC 8 cut(s) 1141, 1265, 1266, 1958, 2425, 2965, 3089, 3162
AsuC2I CCSGG 5 cut(s) 1399, 1400, 3126, 3223, 3224
AsuII TTCGAA 1 cut(s) 3138
AvaI CYCGRG 3 cut(s) 1398, 2638, 3222
AvaII GGWCC 5 cut(s) 1141, 1958, 2425, 2965, 3089
BaeGI GKGCMC 2 cut(s) 637, 1269
BamHI GGATCC 2 cut(s) 958, 2782
BanI GGYRCC 4 cut(s) 460, 538, 694, 850
BanII GRGCYC 4 cut(s) 317, 1269, 1664, 2528
BarI GAAGNNNNNNTAC 2 cut(s) 244, 276
BauI CACGAG 2 cut(s) 1260, 3084
BbsI GAAGAC 5 cut(s) 207, 1315, 1787, 1938, 3086
Bbv12I GWGCWC 4 cut(s) 317, 637, 1664, 2528
BbvCI CCTCAGC 2 cut(s) 1626, 2076
BbvI GCAGC 7 cut(s) 1834, 1846, 2053, 2704, 2768, 2998, 3020
BccI CCATC 8 cut(s) 1041, 1500, 1832, 1860, 2501, 2578, 2603, 2865
BceAI ACGGC 2 cut(s) 2279, 3149
BcgI CGANNNNNNTGC 4 cut(s) 2120, 2154, 2577, 2611
BciT130I CCWGG 8 cut(s) 732, 823, 899, 1212, 1324, 1385, 1797, 3209
BciVI GTATCC 1 cut(s) 1445
BcnI CCSGG 5 cut(s) 1399, 1400, 3126, 3223, 3224
BcoDI GTCTC 3 cut(s) 627, 764, 2641
BcuI ACTAGT 1 cut(s) 2155
BfaI CTAG 7 cut(s) 192, 249, 522, 1286, 2156, 2646, 3110
BfmI CTRYAG 4 cut(s) 1341, 1412, 1860, 2650
BfoI RGCGCY 4 cut(s) 464, 542, 698, 1483
BfrI CTTAAG 2 cut(s) 344, 2555
BfuI GTATCC 1 cut(s) 1445
BglII AGATCT 1 cut(s) 518
BisI GCNGC 9 cut(s) 364, 1848, 1860, 2042, 2267, 2718, 2757, 3009, 3012
BlsI GCNGC 9 cut(s) 365, 1849, 1861, 2043, 2268, 2719, 2758, 3010, 3013
Bme18I GGWCC 5 cut(s) 1141, 1958, 2425, 2965, 3089
BmeRI GACNNNNNGTC 1 cut(s) 1316
BmeT110I CYCGRG 3 cut(s) 1398, 2638, 3222
BmgT120I GGNCC 8 cut(s) 1141, 1265, 1266, 1958, 2425, 2965, 3089, 3162
BmsI GCATC 3 cut(s) 919, 941, 2743
BoxI GACNNNNGTC 1 cut(s) 1797
BpiI GAAGAC 5 cut(s) 207, 1315, 1787, 1938, 3086
BplI GAGNNNNNCTC 2 cut(s) 583, 615
BpmI CTGGAG 1 cut(s) 1345
Bpu10I CCTNAGC 3 cut(s) 1626, 1962, 2076
Bpu14I TTCGAA 1 cut(s) 3138
BpuEI CTTGAG 6 cut(s) 197, 664, 835, 1541, 1868, 2420
BpuMI CCSGG 5 cut(s) 1399, 1400, 3126, 3223, 3224
Bsa29I ATCGAT 1 cut(s) 3322
BsaBI GATNNNNATC 1 cut(s) 2511
BsaHI GRCGYC 5 cut(s) 461, 539, 695, 1083, 2907
BsaJI CCNNGG 8 cut(s) 38, 897, 1383, 1398, 1795, 2778, 3207, 3222
BsaWI WCCGGW 2 cut(s) 1332, 3156
BsaXI ACNNNNNCTCC 2 cut(s) 1859, 1889
Bse1I ACTGG 2 cut(s) 281, 962
Bse3DI GCAATG 1 cut(s) 2437
Bse8I GATNNNNATC 1 cut(s) 2511
BseBI CCWGG 8 cut(s) 732, 823, 899, 1212, 1324, 1385, 1797, 3209
BseCI ATCGAT 1 cut(s) 3322
BseDI CCNNGG 8 cut(s) 38, 897, 1383, 1398, 1795, 2778, 3207, 3222
BseGI GGATG 7 cut(s) 610, 934, 1075, 1636, 1852, 2758, 2899
BseJI GATNNNNATC 1 cut(s) 2511
BseMI GCAATG 1 cut(s) 2437
BseMII CTCAG 8 cut(s) 614, 1077, 1617, 1953, 2029, 2067, 2786, 2901
BseNI ACTGG 2 cut(s) 281, 962
BseRI GAGGAG 3 cut(s) 1880, 2066, 2506
BseSI GKGCMC 2 cut(s) 637, 1269
BseX3I CGGCCG 1 cut(s) 2264
BseXI GCAGC 7 cut(s) 1834, 1846, 2053, 2704, 2768, 2998, 3020
BsgI GTGCAG 6 cut(s) 40, 1219, 2210, 2269, 2564, 2914
Bsh1236I CGCG 3 cut(s) 198, 789, 2269
Bsh1285I CGRYCG 1 cut(s) 2267
BshFI GGCC 5 cut(s) 37, 1267, 2203, 2266, 3164
BshNI GGYRCC 4 cut(s) 460, 538, 694, 850
BshVI ATCGAT 1 cut(s) 3322
BsiEI CGRYCG 1 cut(s) 2267
BsiHKAI GWGCWC 4 cut(s) 317, 637, 1664, 2528
BsiHKCI CYCGRG 3 cut(s) 1398, 2638, 3222
BsiSI CCGG 5 cut(s) 1333, 1399, 3126, 3157, 3223
BslFI GGGAC 3 cut(s) 1094, 1597, 3052
BsmAI GTCTC 3 cut(s) 627, 764, 2641
BsmBI CGTCTC 1 cut(s) 627
BsmFI GGGAC 3 cut(s) 1094, 1597, 3052
BsmI GAATGC 2 cut(s) 122, 981
BsnI GGCC 5 cut(s) 37, 1267, 2203, 2266, 3164
BsoBI CYCGRG 3 cut(s) 1398, 2638, 3222
Bsp119I TTCGAA 1 cut(s) 3138
Bsp120I GGGCCC 1 cut(s) 1265
Bsp1286I GDGCHC 5 cut(s) 317, 637, 1269, 1664, 2528
Bsp1407I TGTACA 2 cut(s) 1376, 3200
Bsp68I TCGCGA 1 cut(s) 198
BspACI CCGC 7 cut(s) 364, 479, 1831, 1970, 2267, 2428, 2726
BspANI GGCC 5 cut(s) 37, 1267, 2203, 2266, 3164
BspCNI CTCAG 8 cut(s) 613, 1076, 1618, 1954, 2028, 2068, 2787, 2900
BspDI ATCGAT 1 cut(s) 3322
BspFNI CGCG 3 cut(s) 198, 789, 2269
BspHI TCATGA 2 cut(s) 781, 1170
BspMAI CTGCAG 1 cut(s) 1864
BspPI GGATC 9 cut(s) 297, 309, 592, 953, 966, 1524, 2520, 2777, 2790
BspT104I TTCGAA 1 cut(s) 3138
BspT107I GGYRCC 4 cut(s) 460, 538, 694, 850
BspTI CTTAAG 2 cut(s) 344, 2555
BsrDI GCAATG 1 cut(s) 2437
BsrGI TGTACA 2 cut(s) 1376, 3200
BsrI ACTGG 2 cut(s) 281, 962
BssECI CCNNGG 8 cut(s) 38, 897, 1383, 1398, 1795, 2778, 3207, 3222
BssNAI GTATAC 2 cut(s) 1283, 2880
BssNI GRCGYC 5 cut(s) 461, 539, 695, 1083, 2907
BssSI CACGAG 2 cut(s) 1260, 3084
Bst1107I GTATAC 2 cut(s) 1283, 2880
Bst2BI CACGAG 2 cut(s) 1260, 3084
Bst2UI CCWGG 8 cut(s) 732, 823, 899, 1212, 1324, 1385, 1797, 3209
Bst6I CTCTTC 4 cut(s) 22, 450, 1424, 1764
BstACI GRCGYC 5 cut(s) 461, 539, 695, 1083, 2907
BstAFI CTTAAG 2 cut(s) 344, 2555
BstAPI GCANNNNNTGC 4 cut(s) 340, 850, 1895, 2551
BstAUI TGTACA 2 cut(s) 1376, 3200
BstBI TTCGAA 1 cut(s) 3138
BstC8I GCNNGC 2 cut(s) 95, 2248
BstDSI CCRYGG 2 cut(s) 38, 2778
BstEII GGTNACC 1 cut(s) 2799
BstF5I GGATG 7 cut(s) 610, 934, 1075, 1636, 1852, 2758, 2899
BstFNI CGCG 3 cut(s) 198, 789, 2269
BstH2I RGCGCY 4 cut(s) 464, 542, 698, 1483
BstHHI GCGC 7 cut(s) 403, 463, 541, 697, 791, 1482, 2617
BstMAI GTCTC 3 cut(s) 627, 764, 2641
BstMCI CGRYCG 1 cut(s) 2267
BstNI CCWGG 8 cut(s) 732, 823, 899, 1212, 1324, 1385, 1797, 3209
BstNSI RCATGY 2 cut(s) 1581, 3296
BstPAI GACNNNNGTC 1 cut(s) 1797
BstPI GGTNACC 1 cut(s) 2799
BstSFI CTRYAG 4 cut(s) 1341, 1412, 1860, 2650
BstSLI GKGCMC 2 cut(s) 637, 1269
BstUI CGCG 3 cut(s) 198, 789, 2269
BstV1I GCAGC 7 cut(s) 1834, 1846, 2053, 2704, 2768, 2998, 3020
BstV2I GAAGAC 5 cut(s) 207, 1315, 1787, 1938, 3086
BstX2I RGATCY 5 cut(s) 518, 584, 958, 1529, 2782
BstYI RGATCY 5 cut(s) 518, 584, 958, 1529, 2782
BstZ17I GTATAC 2 cut(s) 1283, 2880
BstZI CGGCCG 1 cut(s) 2264
Bsu15I ATCGAT 1 cut(s) 3322
BsuI GTATCC 1 cut(s) 1445
BsuRI GGCC 5 cut(s) 37, 1267, 2203, 2266, 3164
BsuTUI ATCGAT 1 cut(s) 3322
BtgI CCRYGG 2 cut(s) 38, 2778
BtsCI GGATG 7 cut(s) 610, 934, 1075, 1636, 1852, 2758, 2899
BtsI GCAGTG 2 cut(s) 336, 1598
BtsIMutI CAGTG 5 cut(s) 336, 1269, 1598, 2547, 2950
BtuMI TCGCGA 1 cut(s) 198
Cac8I GCNNGC 2 cut(s) 95, 2248
CaiI CAGNNNCTG 2 cut(s) 1190, 3014
CciI TCATGA 2 cut(s) 781, 1170
CfoI GCGC 7 cut(s) 403, 463, 541, 697, 791, 1482, 2617
Cfr13I GGNCC 8 cut(s) 1141, 1265, 1266, 1958, 2425, 2965, 3089, 3162
Cfr9I CCCGGG 2 cut(s) 1398, 3222
ClaI ATCGAT 1 cut(s) 3322
CseI GACGC 1 cut(s) 1955
Csp6I GTAC 9 cut(s) 938, 1047, 1377, 1610, 2081, 2159, 2762, 2871, 3201
CviQI GTAC 9 cut(s) 938, 1047, 1377, 1610, 2081, 2159, 2762, 2871, 3201
DinI GGCGCC 3 cut(s) 462, 540, 696
DraI TTTAAA 1 cut(s) 2091
DraIII CACNNNGTG 1 cut(s) 1619
DrdI GACNNNNNNGTC 1 cut(s) 1965
DriI GACNNNNNGTC 1 cut(s) 1316
DseDI GACNNNNNNGTC 1 cut(s) 1965
EaeI YGGCCR 1 cut(s) 2264
EagI CGGCCG 1 cut(s) 2264
Eam1104I CTCTTC 4 cut(s) 22, 450, 1424, 1764
Eam1105I GACNNNNNGTC 1 cut(s) 1316
EarI CTCTTC 4 cut(s) 22, 450, 1424, 1764
Ecl136II GAGCTC 3 cut(s) 315, 1662, 2526
EclXI CGGCCG 1 cut(s) 2264
Eco147I AGGCCT 1 cut(s) 2203
Eco24I GRGCYC 4 cut(s) 317, 1269, 1664, 2528
Eco47I GGWCC 5 cut(s) 1141, 1958, 2425, 2965, 3089
Eco47III AGCGCT 1 cut(s) 1481
Eco52I CGGCCG 1 cut(s) 2264
Eco53kI GAGCTC 3 cut(s) 315, 1662, 2526
Eco57I CTGAAG 2 cut(s) 1920, 1950
Eco88I CYCGRG 3 cut(s) 1398, 2638, 3222
Eco91I GGTNACC 1 cut(s) 2799
EcoICRI GAGCTC 3 cut(s) 315, 1662, 2526
EcoO109I RGGNCCY 2 cut(s) 1265, 3089
EcoO65I GGTNACC 1 cut(s) 2799
EcoRII CCWGG 8 cut(s) 730, 821, 897, 1210, 1322, 1383, 1795, 3207
EcoT22I ATGCAT 1 cut(s) 934
EcoT38I GRGCYC 4 cut(s) 317, 1269, 1664, 2528
EgeI GGCGCC 3 cut(s) 462, 540, 696
EheI GGCGCC 3 cut(s) 462, 540, 696
Esp3I CGTCTC 1 cut(s) 627
FalI AAGNNNNNCTT 2 cut(s) 2085, 2117
FaqI GGGAC 3 cut(s) 1094, 1597, 3052
FauNDI CATATG 1 cut(s) 1923
FblI GTMKAC 3 cut(s) 1282, 1907, 2879
Fnu4HI GCNGC 9 cut(s) 364, 1848, 1860, 2042, 2267, 2718, 2757, 3009, 3012
FokI GGATG 7 cut(s) 617, 941, 1082, 1643, 1839, 2765, 2906
FriOI GRGCYC 4 cut(s) 317, 1269, 1664, 2528
Fsp4HI GCNGC 9 cut(s) 364, 1848, 1860, 2042, 2267, 2718, 2757, 3009, 3012
FspBI CTAG 7 cut(s) 192, 249, 522, 1286, 2156, 2646, 3110
FspI TGCGCA 2 cut(s) 402, 2616
GlaI GCGC 7 cut(s) 402, 462, 540, 696, 790, 1481, 2616
GluI GCNGC 9 cut(s) 364, 1848, 1860, 2042, 2267, 2718, 2757, 3009, 3012
GsuI CTGGAG 1 cut(s) 1345
HaeII RGCGCY 4 cut(s) 464, 542, 698, 1483
HaeIII GGCC 5 cut(s) 37, 1267, 2203, 2266, 3164
HapII CCGG 5 cut(s) 1333, 1399, 3126, 3157, 3223
HgaI GACGC 1 cut(s) 1955
HhaI GCGC 7 cut(s) 403, 463, 541, 697, 791, 1482, 2617
Hin1I GRCGYC 5 cut(s) 461, 539, 695, 1083, 2907
Hin6I GCGC 7 cut(s) 401, 461, 539, 695, 789, 1480, 2615
HinP1I GCGC 7 cut(s) 401, 461, 539, 695, 789, 1480, 2615
HincII GTYRAC 1 cut(s) 1276
HindII GTYRAC 1 cut(s) 1276
HindIII AAGCTT 1 cut(s) 655
HpaI GTTAAC 1 cut(s) 1276
HpaII CCGG 5 cut(s) 1333, 1399, 3126, 3157, 3223
Hpy166II GTNNAC 9 cut(s) 635, 1276, 1283, 1377, 1908, 2012, 2153, 2880, 3201
Hpy8I GTNNAC 9 cut(s) 635, 1276, 1283, 1377, 1908, 2012, 2153, 2880, 3201
HpyCH4IV ACGT 6 cut(s) 1083, 1608, 1807, 1981, 2907, 3182
HpySE526I ACGT 6 cut(s) 1083, 1608, 1807, 1981, 2907, 3182
Hsp92I GRCGYC 5 cut(s) 461, 539, 695, 1083, 2907
HspAI GCGC 7 cut(s) 401, 461, 539, 695, 789, 1480, 2615
KasI GGCGCC 3 cut(s) 460, 538, 694
KspAI GTTAAC 1 cut(s) 1276
LmnI GCTCC 6 cut(s) 270, 955, 1358, 1659, 1745, 3182
Lsp1109I GCAGC 7 cut(s) 1834, 1846, 2053, 2704, 2768, 2998, 3020
LweI GCATC 3 cut(s) 919, 941, 2743
MaeI CTAG 7 cut(s) 192, 249, 522, 1286, 2156, 2646, 3110
MaeII ACGT 6 cut(s) 1083, 1608, 1807, 1981, 2907, 3182
MaeIII GTNAC 7 cut(s) 1127, 1318, 1550, 2369, 2799, 2951, 3098
MfeI CAATTG 3 cut(s) 413, 1440, 1587
MflI RGATCY 5 cut(s) 518, 584, 958, 1529, 2782
MhlI GDGCHC 5 cut(s) 317, 637, 1269, 1664, 2528
Mly113I GGCGCC 3 cut(s) 461, 539, 695
MlyI GAGTC 3 cut(s) 2063, 2179, 2632
MmeI TCCRAC 3 cut(s) 1494, 2037, 2216
Mph1103I ATGCAT 1 cut(s) 934
MroXI GAANNNNTTC 6 cut(s) 440, 674, 1481, 1521, 1706, 3305
MslI CAYNNNNRTG 4 cut(s) 630, 1669, 1734, 2777
MspA1I CMGCKG 4 cut(s) 1859, 2759, 3011, 3147
MspCI CTTAAG 2 cut(s) 344, 2555
MspI CCGG 5 cut(s) 1333, 1399, 3126, 3157, 3223
MunI CAATTG 3 cut(s) 413, 1440, 1587
Mva1269I GAATGC 2 cut(s) 122, 981
MvaI CCWGG 8 cut(s) 732, 823, 899, 1212, 1324, 1385, 1797, 3209
MvnI CGCG 3 cut(s) 198, 789, 2269
NarI GGCGCC 3 cut(s) 461, 539, 695
NciI CCSGG 5 cut(s) 1399, 1400, 3126, 3223, 3224
NdeI CATATG 1 cut(s) 1923
NmuCI GTSAC 2 cut(s) 1318, 2369
NruI TCGCGA 1 cut(s) 198
NsbI TGCGCA 2 cut(s) 402, 2616
NsiI ATGCAT 1 cut(s) 934
NspI RCATGY 2 cut(s) 1581, 3296
NspV TTCGAA 1 cut(s) 3138
OliI CACNNNNGTG 1 cut(s) 1734
PagI TCATGA 2 cut(s) 781, 1170
PceI AGGCCT 1 cut(s) 2203
PciI ACATGT 2 cut(s) 1577, 3292
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 202
PctI GAATGC 2 cut(s) 122, 981
PdmI GAANNNNTTC 6 cut(s) 440, 674, 1481, 1521, 1706, 3305
PfoI TCCNGGA 2 cut(s) 821, 3124
PkrI GCNGC 9 cut(s) 365, 1849, 1861, 2043, 2268, 2719, 2758, 3010, 3013
PleI GAGTC 3 cut(s) 2062, 2178, 2631
PluTI GGCGCC 3 cut(s) 464, 542, 698
PpsI GAGTC 3 cut(s) 2062, 2178, 2631
PpuMI RGGWCCY 1 cut(s) 3089
PscI ACATGT 2 cut(s) 1577, 3292
PshAI GACNNNNGTC 1 cut(s) 1797
PsiI TTATAA 1 cut(s) 2409
Psp124BI GAGCTC 3 cut(s) 317, 1664, 2528
Psp5II RGGWCCY 1 cut(s) 3089
Psp6I CCWGG 8 cut(s) 730, 821, 897, 1210, 1322, 1383, 1795, 3207
PspEI GGTNACC 1 cut(s) 2799
PspGI CCWGG 8 cut(s) 730, 821, 897, 1210, 1322, 1383, 1795, 3207
PspOMI GGGCCC 1 cut(s) 1265
PspPI GGNCC 8 cut(s) 1141, 1265, 1266, 1958, 2425, 2965, 3089, 3162
PspPPI RGGWCCY 1 cut(s) 3089
PstI CTGCAG 1 cut(s) 1864
PstNI CAGNNNCTG 2 cut(s) 1190, 3014
PsuI RGATCY 5 cut(s) 518, 584, 958, 1529, 2782
PvuII CAGCTG 4 cut(s) 1859, 2759, 3011, 3147
RruI TCGCGA 1 cut(s) 198
RsaI GTAC 9 cut(s) 939, 1048, 1378, 1611, 2082, 2160, 2763, 2872, 3202
RsaNI GTAC 9 cut(s) 938, 1047, 1377, 1610, 2081, 2159, 2762, 2871, 3201
RseI CAYNNNNRTG 4 cut(s) 630, 1669, 1734, 2777
SacI GAGCTC 3 cut(s) 317, 1664, 2528
SatI GCNGC 9 cut(s) 364, 1848, 1860, 2042, 2267, 2718, 2757, 3009, 3012
Sau96I GGNCC 8 cut(s) 1141, 1265, 1266, 1958, 2425, 2965, 3089, 3162
SchI GAGTC 3 cut(s) 2063, 2179, 2632
SduI GDGCHC 5 cut(s) 317, 637, 1269, 1664, 2528
SfaNI GCATC 3 cut(s) 919, 941, 2743
SfcI CTRYAG 4 cut(s) 1341, 1412, 1860, 2650
SfoI GGCGCC 3 cut(s) 462, 540, 696
SfuI TTCGAA 1 cut(s) 3138
SinI GGWCC 5 cut(s) 1141, 1958, 2425, 2965, 3089
SmaI CCCGGG 2 cut(s) 1400, 3224
SmiMI CAYNNNNRTG 4 cut(s) 630, 1669, 1734, 2777
SmlI CTYRAG 8 cut(s) 176, 344, 679, 814, 1556, 1883, 2399, 2555
SmoI CTYRAG 8 cut(s) 176, 344, 679, 814, 1556, 1883, 2399, 2555
SpeI ACTAGT 1 cut(s) 2155
SseBI AGGCCT 1 cut(s) 2203
SsiI CCGC 7 cut(s) 364, 479, 1831, 1970, 2267, 2428, 2726
SspDI GGCGCC 3 cut(s) 460, 538, 694
SspI AATATT 3 cut(s) 172, 2395, 3002
SspMI CTAG 7 cut(s) 192, 249, 522, 1286, 2156, 2646, 3110
SstI GAGCTC 3 cut(s) 317, 1664, 2528
StuI AGGCCT 1 cut(s) 2203
TaiI ACGT 6 cut(s) 1086, 1611, 1810, 1984, 2910, 3185
TaqI TCGA 4 cut(s) 2486, 2597, 3138, 3322
TatI WGTACW 3 cut(s) 1376, 2158, 3200
TauI GCSGC 2 cut(s) 366, 2269
TscAI CASTG 5 cut(s) 336, 1276, 1605, 2547, 2950
TseFI GTSAC 2 cut(s) 1318, 2369
TseI GCWGC 7 cut(s) 1847, 1859, 2041, 2717, 2756, 3008, 3011
Tsp45I GTSAC 2 cut(s) 1318, 2369
TspGWI ACGGA 2 cut(s) 55, 714
TspMI CCCGGG 2 cut(s) 1398, 3222
TspRI CASTG 5 cut(s) 336, 1276, 1605, 2547, 2950
Vha464I CTTAAG 2 cut(s) 344, 2555
VneI GTGCAC 1 cut(s) 633
VpaK11BI GGWCC 5 cut(s) 1141, 1958, 2425, 2965, 3089
XapI RAATTY 7 cut(s) 130, 218, 1166, 2359, 2441, 2990, 3117
XceI RCATGY 2 cut(s) 1581, 3296
XcmI CCANNNNNNNNNTGG 2 cut(s) 1040, 2864
XmaI CCCGGG 2 cut(s) 1398, 3222
XmiI GTMKAC 3 cut(s) 1282, 1907, 2879
XmnI GAANNNNTTC 6 cut(s) 440, 674, 1481, 1521, 1706, 3305
XspI CTAG 7 cut(s) 192, 249, 522, 1286, 2156, 2646, 3110
ZraI GACGTC 2 cut(s) 1084, 2908
Zsp2I ATGCAT 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.