Rh5CG271000

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000178
Physical Location & Seq
Reverse (-)
29143018 .. 29151318
8301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG271000.1

Sequence Viewer

Length: 1080 bp
ATGGCCAAGAGATCACAAGGTCCTAAATTTTTGCATCAATTGCGAACATCAGCACTTCCACCAAACCACTTGCGAGCATCTGCTGAAAAGGTTTCTAGGATTGTAAAGCCTTTGGATAAACCTACAACACCTGCATGTCCATTGCGATCTTCAACTGAAAAGGTTTCTAAGGTTATAAAGCCTTTAGTTAAACCTACAACACTTTCAAGCCCATTGCGGTTATCTCCTAGAAAGCATTCAAAGACACAGCCTTCCACAAATCGATCAACACATCCTCGTCGACCTGCTATGCAGTCATCAAGGACTCCATCTCCTCCTTCTTCTCCACATGTTATGAGATCGTCTCCACTTTCCCTTTCACCTCCACATATGCGCAGAGTCTTATCAACCTCTAATCAGCAAGCATCAACTCCAAGTGTGCATGAAGAGATAGCTGAATCTTCTCAAGTTGCTCATCCTCCTACCTTAGAACAGAACATTGGTGCCCAGAAGAAACGACGTGGTGAGACTCGAGGTCTTGGGACAGCCAAGAAGAAATGTTGTAGTAATCAAATAGAGATTGATATTCCAGAGCATGTAAAACGAGCCGTAGGAGCGAATTGCCAGTCTTACATCACAGAGATAGGCTGCATTGTTAGGCAAAATGCTCCATTACAAGTTAAGCATTGGAGTGGAATTAGCAAGGATGATGTTGCTTCGATGGTTCGTTTTGTCCGTGAGAAATTCAAATTGGGGAATGAACCACACGTGAATGAGGCTATTGAGGCAGACATGAAAAGAAGATATAGCACTTGGCGATACAATTTGCATAAGACATTTTTGCAATATGAATCAGTGGAGGAGGCACTTGAGAATAGACCTGAAAATGTGGGAGAAGATGACTGGAATTTTCTCAGCAATTGGTGGCACGATGACGAGTGGCTGGAATTGAGCGGAAAAAATAAGAAAAATAGAGATAAGCTAACAATAACTCATTGTGCTGGGACAAAAGCATTCAGTCGCATTAGATATGAAAATATATCTAATGAAAAGATTTATGTCAAGAGACCAAATGATGGTAGTTACAGGATAAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

359

Amino Acids

40.77

Weight (kDa)

10.01

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 292 - 343 3.2e-06 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AarI CACCTGC 1 cut(s) 139
Acc16I TGCGCA 1 cut(s) 374
Acc36I ACCTGC 2 cut(s) 139, 292
AccB1I GGYRCC 1 cut(s) 482
AccB7I CCANNNNNTGG 1 cut(s) 1055
AccBSI CCGCTC 1 cut(s) 933
AccI GTMKAC 1 cut(s) 280
AciI CCGC 2 cut(s) 217, 933
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 26, 722, 886
AcvI CACGTG 1 cut(s) 748
AfiI CCNNNNNNNGG 1 cut(s) 1055
AflIII ACRYGT 2 cut(s) 328, 745
AgsI TTSAA 4 cut(s) 153, 207, 240, 727
AhdI GACNNNNNGTC 1 cut(s) 513
AjiI CACGTC 1 cut(s) 500
AjuI GAANNNNNNNTTGG 4 cut(s) 462, 494, 713, 745
AluBI AGCT 2 cut(s) 434, 961
AluI AGCT 2 cut(s) 434, 961
Alw26I GTCTC 3 cut(s) 348, 500, 1039
Ama87I CYCGRG 1 cut(s) 510
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 627
ApoI RAATTY 3 cut(s) 26, 722, 886
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
Asp700I GAANNNNTTC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 351, 515
AvaI CYCGRG 1 cut(s) 510
AvaII GGWCC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 487
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 482
BbrPI CACGTG 1 cut(s) 748
BbvI GCAGC 1 cut(s) 614
BccI CCATC 3 cut(s) 316, 694, 1049
BceAI ACGGC 1 cut(s) 572
BcoDI GTCTC 3 cut(s) 348, 500, 1039
BfaI CTAG 2 cut(s) 96, 228
BfuAI ACCTGC 2 cut(s) 139, 292
BisI GCNGC 1 cut(s) 628
BlsI GCNGC 1 cut(s) 629
Bme18I GGWCC 1 cut(s) 20
BmeRI GACNNNNNGTC 1 cut(s) 513
BmeT110I CYCGRG 1 cut(s) 510
BmgBI CACGTC 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 484
BmsI GCATC 3 cut(s) 43, 86, 413
BplI GAGNNNNNCTC 2 cut(s) 328, 360
BpuEI CTTGAG 2 cut(s) 429, 869
Bsa29I ATCGAT 1 cut(s) 262
BsaAI YACGTR 1 cut(s) 748
BsaI GGTCTC 1 cut(s) 1039
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 1055
Bse1I ACTGG 2 cut(s) 604, 887
Bse3DI GCAATG 2 cut(s) 140, 212
BseCI ATCGAT 1 cut(s) 262
BseGI GGATG 3 cut(s) 271, 454, 691
BseLI CCNNNNNNNGG 1 cut(s) 1055
BseMI GCAATG 2 cut(s) 140, 212
BseMII CTCAG 1 cut(s) 907
BseNI ACTGG 2 cut(s) 604, 887
BseRI GAGGAG 2 cut(s) 303, 854
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 1 cut(s) 614
BseYI CCCAGC 1 cut(s) 980
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 482
BshVI ATCGAT 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 510
BslFI GGGAC 2 cut(s) 535, 997
BslI CCNNNNNNNGG 1 cut(s) 1055
BsmAI GTCTC 3 cut(s) 348, 500, 1039
BsmBI CGTCTC 1 cut(s) 348
BsmFI GGGAC 2 cut(s) 535, 997
BsmI GAATGC 2 cut(s) 235, 992
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 1039
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 487
Bsp143I GATC 4 cut(s) 11, 146, 263, 338
BspACI CCGC 2 cut(s) 217, 933
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 906
BspDI ATCGAT 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 484
BspMI ACCTGC 2 cut(s) 139, 292
BspT107I GGYRCC 1 cut(s) 482
BspTNI GGTCTC 1 cut(s) 1039
BsrBI CCGCTC 1 cut(s) 933
BsrDI GCAATG 2 cut(s) 140, 212
BsrI ACTGG 2 cut(s) 604, 887
BssMI GATC 4 cut(s) 11, 146, 263, 338
Bst6I CTCTTC 1 cut(s) 420
BstAPI GCANNNNNTGC 1 cut(s) 40
BstBAI YACGTR 1 cut(s) 748
BstC8I GCNNGC 2 cut(s) 75, 402
BstDEI CTNAG 3 cut(s) 168, 466, 893
BstF5I GGATG 3 cut(s) 271, 454, 691
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 4 cut(s) 14, 149, 266, 341
BstMAI GTCTC 3 cut(s) 348, 500, 1039
BstMBI GATC 4 cut(s) 11, 146, 263, 338
BstMWI GCNNNNNNNGC 3 cut(s) 40, 593, 764
BstNSI RCATGY 3 cut(s) 138, 332, 578
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 614
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 262
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 3 cut(s) 271, 454, 691
BtsIMutI CAGTG 1 cut(s) 840
BveI ACCTGC 2 cut(s) 139, 292
Cac8I GCNNGC 2 cut(s) 75, 402
CfoI GCGC 1 cut(s) 375
Cfr13I GGNCC 1 cut(s) 20
ClaI ATCGAT 1 cut(s) 262
CviAII CATG 5 cut(s) 135, 329, 422, 575, 772
DdeI CTNAG 3 cut(s) 168, 466, 893
DpnI GATC 4 cut(s) 13, 148, 265, 340
DpnII GATC 4 cut(s) 11, 146, 263, 338
DriI GACNNNNNGTC 1 cut(s) 513
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 420
Eam1105I GACNNNNNGTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 1039
Eco47I GGWCC 1 cut(s) 20
Eco72I CACGTG 1 cut(s) 748
Eco88I CYCGRG 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 20
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 5 cut(s) 138, 332, 425, 578, 775
FaqI GGGAC 2 cut(s) 535, 997
FatI CATG 5 cut(s) 134, 328, 421, 574, 771
FauNDI CATATG 1 cut(s) 369
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 628
FokI GGATG 3 cut(s) 258, 441, 698
Fsp4HI GCNGC 1 cut(s) 628
FspBI CTAG 2 cut(s) 96, 228
FspI TGCGCA 1 cut(s) 374
GlaI GCGC 1 cut(s) 374
GluI GCNGC 1 cut(s) 628
GsaI CCCAGC 1 cut(s) 984
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 375
Hin1II CATG 5 cut(s) 138, 332, 425, 578, 775
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 5 cut(s) 304, 378, 437, 508, 830
HphI GGTGA 2 cut(s) 351, 515
Hpy166II GTNNAC 1 cut(s) 281
Hpy188III TCNNGA 2 cut(s) 569, 1042
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 2 cut(s) 282, 501
HpyAV CCTTC 2 cut(s) 261, 327
HpyCH4IV ACGT 2 cut(s) 499, 747
HpyCH4V TGCA 7 cut(s) 34, 134, 292, 421, 630, 808, 823
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 593, 764
HpyF3I CTNAG 3 cut(s) 168, 466, 893
HpySE526I ACGT 2 cut(s) 499, 747
Hsp92II CATG 5 cut(s) 138, 332, 425, 578, 775
HspAI GCGC 1 cut(s) 373
Kzo9I GATC 4 cut(s) 11, 146, 263, 338
LmnI GCTCC 2 cut(s) 593, 652
Lsp1109I GCAGC 1 cut(s) 614
LweI GCATC 3 cut(s) 43, 86, 413
MaeI CTAG 2 cut(s) 96, 228
MaeII ACGT 2 cut(s) 499, 747
MaeIII GTNAC 1 cut(s) 1061
MalI GATC 4 cut(s) 13, 148, 265, 340
MbiI CCGCTC 1 cut(s) 933
MboI GATC 4 cut(s) 11, 146, 263, 338
MboII GAAGA 8 cut(s) 141, 312, 432, 437, 502, 544, 792, 887
MfeI CAATTG 2 cut(s) 38, 898
MhlI GDGCHC 1 cut(s) 487
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 298, 387, 502
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 235
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 189, 660
MslI CAYNNNNRTG 3 cut(s) 133, 669, 750
Msp20I TGGCCA 1 cut(s) 5
MunI CAATTG 2 cut(s) 38, 898
Mva1269I GAATGC 2 cut(s) 235, 992
MwoI GCNNNNNNNGC 3 cut(s) 40, 593, 764
NdeI CATATG 1 cut(s) 369
NdeII GATC 4 cut(s) 11, 146, 263, 338
NlaIII CATG 5 cut(s) 138, 332, 425, 578, 775
NlaIV GGNNCC 1 cut(s) 484
NsbI TGCGCA 1 cut(s) 374
NspI RCATGY 3 cut(s) 138, 332, 578
PaeR7I CTCGAG 1 cut(s) 510
PaqCI CACCTGC 1 cut(s) 139
PciI ACATGT 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 712
PctI GAATGC 2 cut(s) 235, 992
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 437, 830
PflMI CCANNNNNTGG 1 cut(s) 1055
PkrI GCNGC 1 cut(s) 629
PleI GAGTC 3 cut(s) 298, 386, 502
PmaCI CACGTG 1 cut(s) 748
PmlI CACGTG 1 cut(s) 748
PpsI GAGTC 3 cut(s) 298, 386, 502
Ppu21I YACGTR 1 cut(s) 748
PpuMI RGGWCCY 1 cut(s) 20
PscI ACATGT 1 cut(s) 328
PsiI TTATAA 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 20
PspCI CACGTG 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 980
PspN4I GGNNCC 1 cut(s) 484
PspPI GGNCC 1 cut(s) 20
PspPPI RGGWCCY 1 cut(s) 20
PspXI VCTCGAGB 1 cut(s) 510
RseI CAYNNNNRTG 3 cut(s) 133, 669, 750
SalI GTCGAC 1 cut(s) 279
SaqAI TTAA 2 cut(s) 189, 660
SatI GCNGC 1 cut(s) 628
Sau3AI GATC 4 cut(s) 11, 146, 263, 338
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 3 cut(s) 298, 387, 502
SduI GDGCHC 1 cut(s) 487
SfaNI GCATC 3 cut(s) 43, 86, 413
Sfr274I CTCGAG 1 cut(s) 510
SinI GGWCC 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 510
SmiMI CAYNNNNRTG 3 cut(s) 133, 669, 750
SmlI CTYRAG 3 cut(s) 444, 510, 848
SmoI CTYRAG 3 cut(s) 444, 510, 848
SsiI CCGC 2 cut(s) 217, 933
SspMI CTAG 2 cut(s) 96, 228
TaiI ACGT 2 cut(s) 502, 750
TaqI TCGA 4 cut(s) 262, 280, 511, 698
TfiI GAWTC 2 cut(s) 437, 830
Tru1I TTAA 2 cut(s) 189, 660
Tru9I TTAA 2 cut(s) 189, 660
TscAI CASTG 1 cut(s) 840
TseI GCWGC 1 cut(s) 627
TspDTI ATGAA 6 cut(s) 438, 753, 788, 843, 1026, 1041
TspGWI ACGGA 1 cut(s) 704
TspRI CASTG 1 cut(s) 840
Van91I CCANNNNNTGG 1 cut(s) 1055
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 3 cut(s) 26, 722, 886
XceI RCATGY 3 cut(s) 138, 332, 578
XhoI CTCGAG 1 cut(s) 510
XmiI GTMKAC 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 2 cut(s) 96, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.