Rroxscaffold_7G00189260

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000178
Physical Location & Seq
Forward (+)
28997045 .. 28997716
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189260.1

Sequence Viewer

Length: 672 bp
ATGGACCGAAGTTGGATGTACTTGAAACATACATTTCAACCAGAATTTACCAACGGTCTCAAATTATTTATGGATGCTGCAAAAGAACATCTAAACAAAGAAAATAAGACATGTTGCCCTTGTTGTGATTGTAAAAATGGAGAACATTTTACATTAAAAGAGATACGTAGACATATATTGTCAAAATGGTTTCAATTGCATTATTCTGTATGGACTGAGCATGGGGAAGATATTAATGATGTAGCAAATAACCAAATGGATGATGAATTTGTCTTTGACGGTGAGGATGATGGCGAGGATGACGACAATGCTTCAATGATGGACATGTTAAATGATGTTCAAGGGCCTTTAAATATGGAGATAGATGATGATGAGGTAAGTAATCGTGGTGACAGTACACATGCTAACAAATATGATTATTTGTTTGGCGAAGCCCAAAGAGAACTAGACCCAGGTTGTACAAAGTTCTCAGCACTAAGTTTTATTTTAAAGCTAATGCATACGAAGGTACTCGGTAGTTGGAGCATTAAAAGTTTCAACGTTTTGTTGAAAACACTTAAAGATTCTCACCTAAATGGAGTAGTTATTCCATCATCACATTATGAAGCCAAAAAAATGTTGCGAGAATTGGGTTTGGGGTATGAATCTATATATGCATGTAAGAATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

223

Amino Acids

25.75

Weight (kDa)

5.0

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 76 9.4e-19 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 169
AclI AACGTT 1 cut(s) 540
AcsI RAATTY 2 cut(s) 44, 266
AfaI GTAC 4 cut(s) 20, 397, 460, 510
AflIII ACRYGT 2 cut(s) 110, 324
AgsI TTSAA 7 cut(s) 25, 38, 194, 315, 341, 538, 550
AjnI CCWGG 1 cut(s) 451
AluBI AGCT 1 cut(s) 493
AluI AGCT 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 2 cut(s) 44, 266
AseI ATTAAT 1 cut(s) 234
AspS9I GGNCC 2 cut(s) 4, 344
AsuHPI GGTGA 3 cut(s) 293, 401, 560
AvaII GGWCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 64
BccI CCATC 3 cut(s) 284, 313, 598
BciT130I CCWGG 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 1 cut(s) 446
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 344
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 451
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 5 cut(s) 21, 79, 265, 292, 304
BseMII CTCAG 2 cut(s) 207, 483
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 1 cut(s) 346
Bso31I GGTCTC 1 cut(s) 62
Bsp1407I TGTACA 1 cut(s) 458
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 2 cut(s) 208, 482
BspTNI GGTCTC 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 3 cut(s) 56, 281, 395
BstAUI TGTACA 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 167
BstDEI CTNAG 3 cut(s) 216, 469, 476
BstF5I GGATG 5 cut(s) 21, 79, 265, 292, 304
BstMAI GTCTC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 453
BstNSI RCATGY 4 cut(s) 114, 328, 404, 660
BstSCI CCNGG 1 cut(s) 451
BstSNI TACGTA 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 346
BtsCI GGATG 5 cut(s) 21, 79, 265, 292, 304
Cfr13I GGNCC 2 cut(s) 4, 344
Csp6I GTAC 4 cut(s) 19, 396, 459, 509
CviAII CATG 5 cut(s) 111, 221, 325, 401, 657
CviJI RGCY 4 cut(s) 346, 434, 493, 608
CviKI_1 RGCY 4 cut(s) 346, 434, 493, 608
CviQI GTAC 4 cut(s) 19, 396, 459, 509
DdeI CTNAG 3 cut(s) 216, 469, 476
DraI TTTAAA 2 cut(s) 351, 489
Eco105I TACGTA 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 451
EcoT22I ATGCAT 2 cut(s) 501, 658
FaeI CATG 5 cut(s) 114, 224, 328, 404, 660
FatI CATG 5 cut(s) 110, 220, 324, 400, 656
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 5 cut(s) 28, 86, 272, 299, 311
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 446
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 346
Hin1II CATG 5 cut(s) 114, 224, 328, 404, 660
HinfI GANTC 2 cut(s) 563, 644
HphI GGTGA 3 cut(s) 293, 401, 560
Hpy166II GTNNAC 2 cut(s) 170, 398
Hpy8I GTNNAC 2 cut(s) 170, 398
HpyAV CCTTC 1 cut(s) 499
HpyCH4III ACNGT 3 cut(s) 56, 281, 395
HpyCH4IV ACGT 2 cut(s) 166, 540
HpyCH4V TGCA 4 cut(s) 80, 199, 499, 656
HpyF3I CTNAG 3 cut(s) 216, 469, 476
HpySE526I ACGT 2 cut(s) 166, 540
Hsp92II CATG 5 cut(s) 114, 224, 328, 404, 660
LmnI GCTCC 1 cut(s) 522
LpnPI CCDG 3 cut(s) 54, 438, 465
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 446
MaeII ACGT 2 cut(s) 166, 540
MaeIII GTNAC 1 cut(s) 389
MboII GAAGA 1 cut(s) 239
MfeI CAATTG 1 cut(s) 194
MluCI AATT 5 cut(s) 44, 62, 194, 266, 626
MmeI TCCRAC 1 cut(s) 500
MnlI CCTC 3 cut(s) 277, 289, 367
Mph1103I ATGCAT 2 cut(s) 501, 658
MseI TTAA 7 cut(s) 155, 234, 329, 350, 488, 528, 558
MslI CAYNNNNRTG 1 cut(s) 573
MspR9I CCNGG 1 cut(s) 453
MunI CAATTG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 453
NlaIII CATG 5 cut(s) 114, 224, 328, 404, 660
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 2 cut(s) 501, 658
NspI RCATGY 4 cut(s) 114, 328, 404, 660
PciI ACATGT 2 cut(s) 110, 324
PfeI GAWTC 2 cut(s) 563, 644
PkrI GCNGC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 167
PscI ACATGT 2 cut(s) 110, 324
PshBI ATTAAT 1 cut(s) 234
Psp1406I AACGTT 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 451
PspPI GGNCC 2 cut(s) 4, 344
RsaI GTAC 4 cut(s) 20, 397, 460, 510
RsaNI GTAC 4 cut(s) 19, 396, 459, 509
RseI CAYNNNNRTG 1 cut(s) 573
SaqAI TTAA 7 cut(s) 155, 234, 329, 350, 488, 528, 558
SatI GCNGC 1 cut(s) 78
Sau96I GGNCC 2 cut(s) 4, 344
ScrFI CCNGG 1 cut(s) 453
SetI ASST 7 cut(s) 169, 378, 457, 495, 510, 543, 573
SfaNI GCATC 1 cut(s) 64
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 573
SnaBI TACGTA 1 cut(s) 167
Sse9I AATT 5 cut(s) 44, 62, 194, 266, 626
SspMI CTAG 1 cut(s) 446
StyD4I CCNGG 1 cut(s) 451
TaaI ACNGT 3 cut(s) 56, 281, 395
TaiI ACGT 2 cut(s) 169, 543
TaqII GACCGA 1 cut(s) 21
TasI AATT 5 cut(s) 44, 62, 194, 266, 626
TatI WGTACW 3 cut(s) 18, 395, 458
TfiI GAWTC 2 cut(s) 563, 644
Tru1I TTAA 7 cut(s) 155, 234, 329, 350, 488, 528, 558
Tru9I TTAA 7 cut(s) 155, 234, 329, 350, 488, 528, 558
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 3 cut(s) 279, 618, 657
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 234
XapI RAATTY 2 cut(s) 44, 266
XceI RCATGY 4 cut(s) 114, 328, 404, 660
XmiI GTMKAC 1 cut(s) 169
XspI CTAG 1 cut(s) 446
Zsp2I ATGCAT 2 cut(s) 501, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.