Rh4BG323100

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000178
Physical Location & Seq
Reverse (-)
48878721 .. 48902122
23402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG323100.1

Sequence Viewer

Length: 693 bp
ATGAGAGCTGTAGGAACAAACTGCCAATTTTACATTACTGGTATGGGATGCTTCGTTCGAAAAAATGTTCCATTACAAATTAAGAAGTGGCCTGACATCTCAAGAGATGATGTTGCTTTGCTAATTCGCAACGTCCGTGAGAAATTCAATTTGAGCCATGAATCTCATGTGGATGAGGCAATTGAGAAACACATGATCAGATATTTTACCACATGGCGCTATAATTTGCATAAGAAGTTTCAGAAATATGAATCAGTAGAGGAAGCAATGGAGAATCGACCTGAAGATGTTGAAGAGGATGATTGGAACTACTTAATTGCAAATCTGTGGCTAGATGAAAAGTGGCTGAAAACAAGCGAAAAAAACAAGACAAACAGGGACAAGTTAGAGATAACACATTGTGCAGGGACAAAGGCATTTAGTCGTCTTAGAACTGAAAATCGAAATCCTGAAACTGGAGAGGAAATTGGTCGTATTGACCTTTTCAAGCTCACACGATACAGTGAAAAGAAATCTGCATGGGTTGGTGATACAGCAAAGAATGCTTTTCTTGATTTTGATTCCCACAGAACGCTGATAAAGAAGGAAGTTAAAAAGAAAATTAAAGAGAATAGCCTAGAGACATTGAGTTTTGTGTATACCAGAATCACATCCATCAGCCAACGAGGAAAGATGAGATATATTGTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

230

Amino Acids

27.38

Weight (kDa)

9.26

Isoelectric Point (pI)

26.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 99 - 226 4.8e-12 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 638
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 455
AgsI TTSAA 3 cut(s) 148, 293, 487
AloI GAACNNNNNNTCC 2 cut(s) 39, 71
AluBI AGCT 2 cut(s) 8, 490
AluI AGCT 2 cut(s) 8, 490
Alw26I GTCTC 1 cut(s) 614
AoxI GGCC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 539
AsuII TTCGAA 1 cut(s) 58
BccI CCATC 1 cut(s) 662
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 2 cut(s) 332, 617
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 220
BmsI GCATC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse1I ACTGG 2 cut(s) 43, 460
Bse3DI GCAATG 1 cut(s) 273
BseGI GGATG 4 cut(s) 53, 178, 304, 650
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMI GCAATG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 43, 460
BsgI GTGCAG 1 cut(s) 423
BshFI GGCC 1 cut(s) 91
BslFI GGGAC 2 cut(s) 392, 421
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 614
BsmFI GGGAC 2 cut(s) 392, 421
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 58
Bsp143I GATC 1 cut(s) 195
BspANI GGCC 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 2 cut(s) 43, 460
BssMI GATC 1 cut(s) 195
BssNAI GTATAC 1 cut(s) 639
Bst1107I GTATAC 1 cut(s) 639
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 542
BstBI TTCGAA 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 428
BstF5I GGATG 4 cut(s) 53, 178, 304, 650
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 542
BstSFI CTRYAG 1 cut(s) 9
BstZ17I GTATAC 1 cut(s) 639
BsuRI GGCC 1 cut(s) 91
BtsCI GGATG 4 cut(s) 53, 178, 304, 650
BtsIMutI CAGTG 1 cut(s) 508
CfoI GCGC 1 cut(s) 219
CviAII CATG 5 cut(s) 158, 167, 193, 213, 519
CviJI RGCY 8 cut(s) 8, 91, 156, 331, 346, 490, 615, 660
CviKI_1 RGCY 8 cut(s) 8, 91, 156, 331, 346, 490, 615, 660
DdeI CTNAG 1 cut(s) 428
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
DraIII CACNNNGTG 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 303
FaeI CATG 5 cut(s) 161, 170, 196, 216, 522
FaqI GGGAC 2 cut(s) 392, 421
FatI CATG 5 cut(s) 157, 166, 192, 212, 518
FbaI TGATCA 1 cut(s) 195
FblI GTMKAC 1 cut(s) 638
FokI GGATG 4 cut(s) 60, 185, 311, 637
FspBI CTAG 2 cut(s) 332, 617
GlaI GCGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 477
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 1 cut(s) 91
HhaI GCGC 1 cut(s) 219
Hin1II CATG 5 cut(s) 161, 170, 196, 216, 522
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 5 cut(s) 161, 251, 274, 560, 645
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 1 cut(s) 639
Hpy188I TCNGA 2 cut(s) 200, 243
Hpy188III TCNNGA 3 cut(s) 102, 449, 551
Hpy8I GTNNAC 1 cut(s) 639
HpyAV CCTTC 1 cut(s) 577
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 4 cut(s) 229, 320, 404, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 542
HpyF3I CTNAG 1 cut(s) 428
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 5 cut(s) 161, 170, 196, 216, 522
HspAI GCGC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 1 cut(s) 195
LpnPI CCDG 8 cut(s) 24, 105, 294, 361, 390, 441, 462, 655
LweI GCATC 1 cut(s) 38
MaeI CTAG 2 cut(s) 332, 617
MaeII ACGT 1 cut(s) 132
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 2 cut(s) 296, 305
MfeI CAATTG 1 cut(s) 180
MnlI CCTC 5 cut(s) 169, 253, 289, 454, 659
MseI TTAA 4 cut(s) 81, 314, 591, 603
MslI CAYNNNNRTG 1 cut(s) 171
MunI CAATTG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 547
MwoI GCNNNNNNNGC 1 cut(s) 542
NdeII GATC 1 cut(s) 195
NlaIII CATG 5 cut(s) 161, 170, 196, 216, 522
NspV TTCGAA 1 cut(s) 58
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PctI GAATGC 1 cut(s) 547
PfeI GAWTC 5 cut(s) 161, 251, 274, 560, 645
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 4 cut(s) 81, 314, 591, 603
Sau3AI GATC 1 cut(s) 195
SetI ASST 5 cut(s) 10, 135, 283, 483, 492
SfaNI GCATC 1 cut(s) 38
SfcI CTRYAG 1 cut(s) 9
SfuI TTCGAA 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
SspMI CTAG 2 cut(s) 332, 617
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 58, 277, 442
TfiI GAWTC 5 cut(s) 161, 251, 274, 560, 645
Tru1I TTAA 4 cut(s) 81, 314, 591, 603
Tru9I TTAA 4 cut(s) 81, 314, 591, 603
TscAI CASTG 1 cut(s) 508
TspDTI ATGAA 3 cut(s) 174, 264, 351
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 508
XapI RAATTY 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 638
XspI CTAG 2 cut(s) 332, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.