RLG00000017793

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000178
Physical Location & Seq
Reverse (-)
21284628 .. 21286776
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017793

Sequence Viewer

Length: 462 bp
ATGAGTATGCAAGATAAACCACTACCTGAAGACCAGTTCCCAGGCGTCTGGCGAGAGCCAATAGTAGCGTCGTCTTGCCGGAGCTCGGTGGACCCAATAACAACGGAGCATAAAGCAGAACTTGAGAGGCAGAATATTACAAACATAGGAAAGGAACAGCAACAAAGATTTCATAAGTGGTTTTTGAGACGTGTGAAAGCTGAAGTGGATGATTTATTAGAGGAGATTGAAGATCCATATCAGCAAGTGTCACATGAGTATGTCAATTTAGATGAAATTGACATTGGGGAGACTTCATTGTGTAGAGATGACAGTGAAATGATCATTGTTGATTTGAATGCTGACAAGCAAGGGATTAGTGATTCTACATTCATCAATGATAGTGATGCAGAAGATGGTGACTTTGGTGATAAAGATAATGAGTTTATGTATTCTGATGATAACAAGGACGACTATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.73

Weight (kDa)

4.15

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 227
AcuI CTGAAG 2 cut(s) 48, 222
AcyI GRCGYC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 85
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 2 cut(s) 230, 337
AjiI CACGTC 1 cut(s) 191
AjnI CCWGG 1 cut(s) 40
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 2 cut(s) 84, 200
AluI AGCT 2 cut(s) 84, 200
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 2 cut(s) 181, 284
AlwI GGATC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 2 cut(s) 410, 419
AvaII GGWCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 86
BccI CCATC 1 cut(s) 389
BciT130I CCWGG 1 cut(s) 42
BclI TGATCA 1 cut(s) 321
BcoDI GTCTC 2 cut(s) 181, 284
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 214
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 181, 284
BsmBI CGTCTC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 232, 321
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 2 cut(s) 232, 321
BssNI GRCGYC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 45
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 2 cut(s) 235, 324
BstMAI GTCTC 2 cut(s) 181, 284
BstMBI GATC 2 cut(s) 232, 321
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 1 cut(s) 232
BtrI CACGTC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 91
CseI GACGC 2 cut(s) 34, 57
CviAII CATG 1 cut(s) 254
CviJI RGCY 3 cut(s) 58, 84, 200
CviKI_1 RGCY 3 cut(s) 58, 84, 200
DpnI GATC 2 cut(s) 234, 323
DpnII GATC 2 cut(s) 232, 321
Ecl136II GAGCTC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 48, 222
EcoICRI GAGCTC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 86
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 1 cut(s) 257
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 321
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 1 cut(s) 86
HapII CCGG 1 cut(s) 79
HgaI GACGC 2 cut(s) 34, 57
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 1 cut(s) 257
HinfI GANTC 1 cut(s) 362
HpaII CCGG 1 cut(s) 79
HphI GGTGA 2 cut(s) 410, 419
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 436
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 10, 389
HpySE526I ACGT 1 cut(s) 190
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 2 cut(s) 232, 321
LmnI GCTCC 2 cut(s) 81, 106
LpnPI CCDG 6 cut(s) 27, 34, 39, 47, 54, 92
LweI GCATC 1 cut(s) 376
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 2 cut(s) 249, 398
MalI GATC 2 cut(s) 234, 323
MboI GATC 2 cut(s) 232, 321
MboII GAAGA 3 cut(s) 41, 242, 404
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 2 cut(s) 265, 276
MnlI CCTC 2 cut(s) 120, 214
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 1 cut(s) 42
NdeII GATC 2 cut(s) 232, 321
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 2 cut(s) 249, 398
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 91
PsuI RGATCY 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 1 cut(s) 86
Sau3AI GATC 2 cut(s) 232, 321
Sau96I GGNCC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 86
SetI ASST 4 cut(s) 28, 86, 193, 202
SfaNI GCATC 1 cut(s) 376
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 2 cut(s) 265, 276
SspI AATATT 1 cut(s) 136
SstI GAGCTC 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 1 cut(s) 193
TasI AATT 2 cut(s) 265, 276
TfiI GAWTC 1 cut(s) 362
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 2 cut(s) 249, 398
Tsp45I GTSAC 2 cut(s) 249, 398
TspDTI ATGAA 4 cut(s) 161, 285, 288, 361
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.