Rroxscaffold_5G00355660

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000178
Physical Location & Seq
Reverse (-)
34497879 .. 34499728
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355660.1

Sequence Viewer

Length: 1074 bp
ATGCTACGATCATCTTCTGTTCAGGAAGGGTCAACTTCTATTCAACAAAAATCTGCTTCAACTATAAATGTCACAGAGCCTTCTCAAGTTCGTTCTTTACCGTTTGTGGATGAGGTCACTAACACTAGTGGTGGTGCAGTTAGCAAGAAAGTGCGTGGTGAGCCTCGATGTCTTGAGCTATTCAAGAGGAAGCGCGATGGTGTCCAATTTGATATTGATATTCCAAAGCATACCATGAGAGCTGTAGGAACAAACTGCCAATTTTACATTACTAGTATGGGATGCTTCGTTCGAAAAAATGTTCCATTACAAATTAAGAAGTGGTCCGACATCTCAAGAGATGACGTTGCTTTGCTAATTCGCCATGTCCGTGAGAAATTCAATTTGAGCCATGAATCTCATGTGGATGAGGCAATTGAGAGACACATGATCAGATATTTTACCACATGGCGCTATAATTTGCATAAGAAGTTTCAGAAATATGAATCAGTAGAGGAAGCAATGGAGAATCGACCTGAAGATGTTGAAGAGGATGATTGGAACTACTTAATTGCAAATTTGTGGCAAGATCAAAAGTGGCTGCGAAATCCTGAAACTGGAGAGGAAATTGGTCGTATTGACCTTTTCAAGCTCACACGATACAGTGAAAAGAAATCTGCATGGGTTGGTGATACAGCAAAGAATGCTTTTATCTATGATGAAGTGCTTTCCAAAATTATTGGTCCACCACGATCAAGCTATATACGTGGCTTAGGAGCAGGCCCAAAGCCTAAAAGGTCTAAATTTTCTGCAAATGATGCTCAAGTGAGGGAGGCGAATCAAAGGGCAGATGAAGCGGAAAGAAGAGCAATGCAGCTTGTAGATGAATTGATGGCTGTAAAGTCTACTGCAGCTCAGCAAAATGAGGAGTTAGAGATGGTCAAAGCTGGTGCAGCTCAACAAAATGAAGAGTTAGAGGCAGTGAAGGTTAGAGCTGCTCAACAAAATGAAGAGTTGGAGGCATTAAAGGCAAGACAAAATCAGACCGACACACTTTTACTCAAATTGATGGCACAGTTGTCCTCCCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

357

Amino Acids

40.95

Weight (kDa)

8.25

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 884
AccII CGCG 1 cut(s) 195
AciI CCGC 1 cut(s) 836
AcsI RAATTY 3 cut(s) 377, 556, 782
AcuI CTGAAG 1 cut(s) 537
AfiI CCNNNNNNNGG 1 cut(s) 596
AgsI TTSAA 6 cut(s) 44, 60, 184, 382, 527, 628
AhlI ACTAGT 2 cut(s) 125, 272
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 9 cut(s) 178, 242, 631, 738, 856, 893, 926, 935, 974
AluI AGCT 9 cut(s) 178, 242, 631, 738, 856, 893, 926, 935, 974
Alw26I GTCTC 1 cut(s) 415
AoxI GGCC 1 cut(s) 760
ApeKI GCWGC 5 cut(s) 580, 853, 890, 932, 974
ApoI RAATTY 3 cut(s) 377, 556, 782
AspLEI GCGC 2 cut(s) 195, 453
AspS9I GGNCC 3 cut(s) 324, 722, 761
AsuHPI GGTGA 2 cut(s) 170, 680
AsuII TTCGAA 1 cut(s) 292
AvaII GGWCC 2 cut(s) 324, 722
BbvI GCAGC 5 cut(s) 567, 865, 902, 944, 961
BccI CCATC 4 cut(s) 191, 865, 910, 1042
BclI TGATCA 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 415
BcuI ACTAGT 2 cut(s) 125, 272
BfaI CTAG 2 cut(s) 126, 273
BfmI CTRYAG 2 cut(s) 243, 888
BfoI RGCGCY 1 cut(s) 454
BisI GCNGC 5 cut(s) 581, 854, 891, 933, 975
BlpI GCTNAGC 1 cut(s) 894
BlsI GCNGC 5 cut(s) 582, 855, 892, 934, 976
Bme18I GGWCC 2 cut(s) 324, 722
BmgT120I GGNCC 3 cut(s) 324, 722, 761
BmsI GCATC 2 cut(s) 272, 787
BpmI CTGGAG 1 cut(s) 618
Bpu10I CCTNAGC 1 cut(s) 751
Bpu1102I GCTNAGC 1 cut(s) 894
Bpu14I TTCGAA 1 cut(s) 292
BpuEI CTTGAG 4 cut(s) 69, 194, 319, 786
BsaAI YACGTR 1 cut(s) 746
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse1I ACTGG 1 cut(s) 601
Bse3DI GCAATG 2 cut(s) 507, 855
BseGI GGATG 4 cut(s) 115, 287, 412, 538
BseLI CCNNNNNNNGG 1 cut(s) 596
BseMI GCAATG 2 cut(s) 507, 855
BseMII CTCAG 1 cut(s) 908
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 1 cut(s) 920
BseXI GCAGC 5 cut(s) 567, 865, 902, 944, 961
BsgI GTGCAG 2 cut(s) 156, 951
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 762
BslI CCNNNNNNNGG 1 cut(s) 596
BsmAI GTCTC 1 cut(s) 415
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 1 cut(s) 762
Bsp119I TTCGAA 1 cut(s) 292
Bsp143I GATC 4 cut(s) 8, 429, 568, 731
Bsp1720I GCTNAGC 1 cut(s) 894
BspACI CCGC 1 cut(s) 836
BspANI GGCC 1 cut(s) 762
BspCNI CTCAG 1 cut(s) 907
BspFNI CGCG 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 892
BspQI GCTCTTC 1 cut(s) 838
BspT104I TTCGAA 1 cut(s) 292
BsrDI GCAATG 2 cut(s) 507, 855
BsrI ACTGG 1 cut(s) 601
BssMI GATC 4 cut(s) 8, 429, 568, 731
Bst4CI ACNGT 3 cut(s) 102, 644, 1056
Bst6I CTCTTC 4 cut(s) 522, 838, 942, 984
BstAPI GCANNNNNTGC 2 cut(s) 683, 797
BstBAI YACGTR 1 cut(s) 746
BstBI TTCGAA 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 760
BstDEI CTNAG 2 cut(s) 751, 894
BstF5I GGATG 4 cut(s) 115, 287, 412, 538
BstFNI CGCG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 454
BstHHI GCGC 2 cut(s) 195, 453
BstKTI GATC 4 cut(s) 11, 432, 571, 734
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 4 cut(s) 8, 429, 568, 731
BstMWI GCNNNNNNNGC 6 cut(s) 160, 683, 797, 833, 932, 1007
BstSFI CTRYAG 2 cut(s) 243, 888
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 5 cut(s) 567, 865, 902, 944, 961
BsuRI GGCC 1 cut(s) 762
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 4 cut(s) 115, 287, 412, 538
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 2 cut(s) 649, 966
Cac8I GCNNGC 1 cut(s) 760
CfoI GCGC 2 cut(s) 195, 453
Cfr13I GGNCC 3 cut(s) 324, 722, 761
CviAII CATG 7 cut(s) 235, 365, 392, 401, 427, 447, 660
DdeI CTNAG 2 cut(s) 751, 894
DpnI GATC 4 cut(s) 10, 431, 570, 733
DpnII GATC 4 cut(s) 8, 429, 568, 731
Eam1104I CTCTTC 4 cut(s) 522, 838, 942, 984
EarI CTCTTC 4 cut(s) 522, 838, 942, 984
Eco47I GGWCC 2 cut(s) 324, 722
Eco57I CTGAAG 1 cut(s) 537
FaeI CATG 7 cut(s) 238, 368, 395, 404, 430, 450, 663
FatI CATG 7 cut(s) 234, 364, 391, 400, 426, 446, 659
FbaI TGATCA 1 cut(s) 429
FblI GTMKAC 1 cut(s) 884
Fnu4HI GCNGC 5 cut(s) 581, 854, 891, 933, 975
FokI GGATG 4 cut(s) 122, 294, 419, 545
Fsp4HI GCNGC 5 cut(s) 581, 854, 891, 933, 975
FspBI CTAG 2 cut(s) 126, 273
GlaI GCGC 2 cut(s) 194, 452
GluI GCNGC 5 cut(s) 581, 854, 891, 933, 975
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 1 cut(s) 454
HaeIII GGCC 1 cut(s) 762
HhaI GCGC 2 cut(s) 195, 453
Hin1II CATG 7 cut(s) 238, 368, 395, 404, 430, 450, 663
Hin6I GCGC 2 cut(s) 193, 451
HinP1I GCGC 2 cut(s) 193, 451
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 4 cut(s) 395, 485, 508, 817
HphI GGTGA 2 cut(s) 170, 680
Hpy166II GTNNAC 3 cut(s) 33, 725, 885
Hpy188I TCNGA 4 cut(s) 328, 434, 477, 1023
Hpy188III TCNNGA 5 cut(s) 23, 173, 184, 336, 590
Hpy8I GTNNAC 3 cut(s) 33, 725, 885
HpyAV CCTTC 3 cut(s) 20, 90, 958
HpyCH4III ACNGT 3 cut(s) 102, 644, 1056
HpyCH4IV ACGT 2 cut(s) 345, 745
HpyCH4V TGCA 8 cut(s) 137, 463, 554, 659, 791, 853, 890, 932
HpyF10VI GCNNNNNNNGC 6 cut(s) 160, 683, 797, 833, 932, 1007
HpyF3I CTNAG 2 cut(s) 751, 894
HpySE526I ACGT 2 cut(s) 345, 745
Hsp92II CATG 7 cut(s) 238, 368, 395, 404, 430, 450, 663
HspAI GCGC 2 cut(s) 193, 451
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 4 cut(s) 8, 429, 568, 731
LguI GCTCTTC 1 cut(s) 838
LmnI GCTCC 1 cut(s) 755
LpnPI CCDG 6 cut(s) 8, 528, 582, 603, 744, 912
Lsp1109I GCAGC 5 cut(s) 567, 865, 902, 944, 961
LweI GCATC 2 cut(s) 272, 787
MaeI CTAG 2 cut(s) 126, 273
MaeII ACGT 2 cut(s) 345, 745
MaeIII GTNAC 2 cut(s) 70, 115
MalI GATC 4 cut(s) 10, 431, 570, 733
MboI GATC 4 cut(s) 8, 429, 568, 731
MboII GAAGA 6 cut(s) 6, 530, 539, 855, 959, 1001
MfeI CAATTG 1 cut(s) 414
MmeI TCCRAC 2 cut(s) 351, 975
MseI TTAA 3 cut(s) 315, 548, 1004
MslI CAYNNNNRTG 2 cut(s) 369, 405
MunI CAATTG 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 688
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 6 cut(s) 160, 683, 797, 833, 932, 1007
NdeII GATC 4 cut(s) 8, 429, 568, 731
NlaIII CATG 7 cut(s) 238, 368, 395, 404, 430, 450, 663
NmuCI GTSAC 2 cut(s) 70, 115
NspV TTCGAA 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 838
PcsI WCGNNNNNNNCGW 1 cut(s) 367
PctI GAATGC 1 cut(s) 688
PfeI GAWTC 4 cut(s) 395, 485, 508, 817
PkrI GCNGC 5 cut(s) 582, 855, 892, 934, 976
Ppu21I YACGTR 1 cut(s) 746
PspPI GGNCC 3 cut(s) 324, 722, 761
PstI CTGCAG 1 cut(s) 892
RseI CAYNNNNRTG 2 cut(s) 369, 405
SapI GCTCTTC 1 cut(s) 838
SaqAI TTAA 3 cut(s) 315, 548, 1004
SatI GCNGC 5 cut(s) 581, 854, 891, 933, 975
Sau3AI GATC 4 cut(s) 8, 429, 568, 731
Sau96I GGNCC 3 cut(s) 324, 722, 761
SfaNI GCATC 2 cut(s) 272, 787
SfcI CTRYAG 2 cut(s) 243, 888
SfuI TTCGAA 1 cut(s) 292
SinI GGWCC 2 cut(s) 324, 722
SmiMI CAYNNNNRTG 2 cut(s) 369, 405
SmlI CTYRAG 4 cut(s) 84, 173, 334, 801
SmoI CTYRAG 4 cut(s) 84, 173, 334, 801
SpeI ACTAGT 2 cut(s) 125, 272
SsiI CCGC 1 cut(s) 836
SspMI CTAG 2 cut(s) 126, 273
TaaI ACNGT 3 cut(s) 102, 644, 1056
TaiI ACGT 2 cut(s) 348, 748
TaqI TCGA 3 cut(s) 166, 292, 511
TaqII GACCGA 1 cut(s) 1040
TfiI GAWTC 4 cut(s) 395, 485, 508, 817
Tru1I TTAA 3 cut(s) 315, 548, 1004
Tru9I TTAA 3 cut(s) 315, 548, 1004
TscAI CASTG 2 cut(s) 649, 966
TseFI GTSAC 2 cut(s) 70, 115
TseI GCWGC 5 cut(s) 580, 853, 890, 932, 974
Tsp45I GTSAC 2 cut(s) 70, 115
TspDTI ATGAA 7 cut(s) 408, 498, 714, 846, 879, 960, 1002
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 2 cut(s) 649, 966
VpaK11BI GGWCC 2 cut(s) 324, 722
XapI RAATTY 3 cut(s) 377, 556, 782
XmiI GTMKAC 1 cut(s) 884
XspI CTAG 2 cut(s) 126, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.