Rw5G011510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000178
Physical Location & Seq
Reverse (-)
13187899 .. 13192088
4190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011510.1

Sequence Viewer

Length: 645 bp
ATGATTGCCGATAACTATTTAATTGAAAGACCTCTAGGCCAAGTTGAAGATCATTTATTTTCGTATGGAATGGTTATGCATTACATTAAGTGGACAAAACATGGGGAAGAAGAGTATGATGATGAATTGGAAAATGATGACATAATAGAAGAGGATAATGGAGAGGATGTTGAGGAAGATGTTGATGATGTAGTTGAAATGATACATGAATATCAGGCTGGTGCTTTTGCTAATGACGGGACCCAACAAGTGTACTATTTACGAGATACTAGGCTTGGTAATAATTGGCGTGTCGTAGAGATATCACAACCTCGAGGGAATTATGATGCTGTAGAAAAAGAAGCAGAAGAAAATGAGGTATGTGATTCAGCAGTGCTGGCAGAGGATCCCTATCAACAAGAGTTGCATGATTTTATCAATCCTATTGAGGTTAATGATGGCTACGTGTCATTAAGTAGGGATGACATGGAAATGATTGTTGTGGATTTGAATGCCAAAAGACAACGAAGAGAAAATGATAGCTTCATTAATGATGATTGTGACGCTGAAGATGGTGGCTCTAGTGATGACAATGTTGAGGGTGAATATGTCTCATCTGAGGATGATATTCATGATGCTTATGTTGTTCTTGAGACCACAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.71

Weight (kDa)

4.05

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 312
AclWI GGATC 2 cut(s) 380, 393
AcuI CTGAAG 1 cut(s) 567
AdeI CACNNNGTG 1 cut(s) 642
AfaI GTAC 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 4 cut(s) 26, 47, 197, 490
AluBI AGCT 1 cut(s) 522
AluI AGCT 1 cut(s) 522
Alw26I GTCTC 2 cut(s) 595, 626
AlwI GGATC 2 cut(s) 380, 393
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 1 cut(s) 37
AseI ATTAAT 1 cut(s) 528
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 593
AvaI CYCGRG 1 cut(s) 312
AvaII GGWCC 1 cut(s) 240
BamHI GGATCC 1 cut(s) 385
BccI CCATC 2 cut(s) 431, 545
BcoDI GTCTC 2 cut(s) 595, 626
BfaI CTAG 3 cut(s) 35, 270, 561
BfmI CTRYAG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 3 cut(s) 241, 242, 387
BmsI GCATC 2 cut(s) 316, 604
BsaAI YACGTR 1 cut(s) 445
BsaBI GATNNNNATC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 626
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bse8I GATNNNNATC 1 cut(s) 390
BseGI GGATG 3 cut(s) 172, 466, 607
BseJI GATNNNNATC 1 cut(s) 390
BseMII CTCAG 1 cut(s) 588
BshFI GGCC 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 595, 626
BsmFI GGGAC 1 cut(s) 253
BsmI GAATGC 1 cut(s) 496
BsnI GGCC 1 cut(s) 39
Bso31I GGTCTC 1 cut(s) 626
BsoBI CYCGRG 1 cut(s) 312
Bsp143I GATC 2 cut(s) 49, 385
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 589
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 3 cut(s) 241, 242, 387
BspPI GGATC 2 cut(s) 380, 393
BspTNI GGTCTC 1 cut(s) 626
BssMI GATC 2 cut(s) 49, 385
Bst6I CTCTTC 3 cut(s) 105, 144, 502
BstBAI YACGTR 1 cut(s) 445
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 1 cut(s) 597
BstF5I GGATG 3 cut(s) 172, 466, 607
BstKTI GATC 2 cut(s) 52, 388
BstMAI GTCTC 2 cut(s) 595, 626
BstMBI GATC 2 cut(s) 49, 385
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 3 cut(s) 172, 466, 607
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 378
CciI TCATGA 1 cut(s) 610
Cfr13I GGNCC 1 cut(s) 240
CseI GACGC 1 cut(s) 551
Csp6I GTAC 1 cut(s) 253
CviAII CATG 5 cut(s) 101, 206, 407, 466, 611
CviJI RGCY 6 cut(s) 39, 218, 274, 441, 522, 558
CviKI_1 RGCY 6 cut(s) 39, 218, 274, 441, 522, 558
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 597
DpnI GATC 2 cut(s) 51, 387
DpnII GATC 2 cut(s) 49, 385
DraIII CACNNNGTG 1 cut(s) 642
Eam1104I CTCTTC 3 cut(s) 105, 144, 502
EarI CTCTTC 3 cut(s) 105, 144, 502
Eco31I GGTCTC 1 cut(s) 626
Eco32I GATATC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 240
EcoRV GATATC 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 81
FaeI CATG 5 cut(s) 104, 209, 410, 469, 614
FaqI GGGAC 1 cut(s) 253
FatI CATG 5 cut(s) 100, 205, 406, 465, 610
FokI GGATG 3 cut(s) 179, 473, 614
FspBI CTAG 3 cut(s) 35, 270, 561
HaeIII GGCC 1 cut(s) 39
HgaI GACGC 1 cut(s) 551
Hin1II CATG 5 cut(s) 104, 209, 410, 469, 614
HinfI GANTC 1 cut(s) 365
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 2 cut(s) 93, 253
Hpy188I TCNGA 1 cut(s) 598
Hpy188III TCNNGA 2 cut(s) 611, 629
Hpy8I GTNNAC 2 cut(s) 93, 253
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 2 cut(s) 79, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 5 cut(s) 104, 209, 410, 469, 614
KflI GGGWCCC 1 cut(s) 240
Kzo9I GATC 2 cut(s) 49, 385
LpnPI CCDG 3 cut(s) 200, 204, 362
LweI GCATC 2 cut(s) 316, 604
MaeI CTAG 3 cut(s) 35, 270, 561
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 539
MalI GATC 2 cut(s) 51, 387
MboI GATC 2 cut(s) 49, 385
MboII GAAGA 8 cut(s) 59, 119, 122, 161, 188, 359, 519, 560
MflI RGATCY 1 cut(s) 385
MluCI AATT 4 cut(s) 21, 125, 283, 319
Mph1103I ATGCAT 1 cut(s) 81
MseI TTAA 5 cut(s) 20, 87, 432, 452, 528
MslI CAYNNNNRTG 1 cut(s) 470
Mva1269I GAATGC 1 cut(s) 496
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 2 cut(s) 49, 385
NlaIII CATG 5 cut(s) 104, 209, 410, 469, 614
NlaIV GGNNCC 3 cut(s) 241, 242, 387
NmuCI GTSAC 1 cut(s) 539
NsiI ATGCAT 1 cut(s) 81
PaeR7I CTCGAG 1 cut(s) 312
PagI TCATGA 1 cut(s) 610
PctI GAATGC 1 cut(s) 496
PfeI GAWTC 1 cut(s) 365
Ppu21I YACGTR 1 cut(s) 445
PpuMI RGGWCCY 1 cut(s) 240
PshBI ATTAAT 1 cut(s) 528
Psp5II RGGWCCY 1 cut(s) 240
PspN4I GGNNCC 3 cut(s) 241, 242, 387
PspPI GGNCC 1 cut(s) 240
PspPPI RGGWCCY 1 cut(s) 240
PspXI VCTCGAGB 1 cut(s) 312
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 5 cut(s) 20, 87, 432, 452, 528
Sau3AI GATC 2 cut(s) 49, 385
Sau96I GGNCC 1 cut(s) 240
SetI ASST 7 cut(s) 34, 313, 360, 432, 447, 524, 644
SfaNI GCATC 2 cut(s) 316, 604
SfcI CTRYAG 1 cut(s) 330
Sfr274I CTCGAG 1 cut(s) 312
SinI GGWCC 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 2 cut(s) 312, 629
SmoI CTYRAG 2 cut(s) 312, 629
Sse9I AATT 4 cut(s) 21, 125, 283, 319
SspMI CTAG 3 cut(s) 35, 270, 561
TaiI ACGT 1 cut(s) 447
TaqI TCGA 1 cut(s) 313
TasI AATT 4 cut(s) 21, 125, 283, 319
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 5 cut(s) 20, 87, 432, 452, 528
Tru9I TTAA 5 cut(s) 20, 87, 432, 452, 528
TscAI CASTG 1 cut(s) 378
TseFI GTSAC 1 cut(s) 539
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 4 cut(s) 138, 222, 514, 599
TspRI CASTG 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 240
VspI ATTAAT 1 cut(s) 528
XhoI CTCGAG 1 cut(s) 312
XspI CTAG 3 cut(s) 35, 270, 561
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.