Rmu_sc0000293.1_g000019

Domain of unknown function (DUF4218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000293.1
OG0000178
Physical Location & Seq
Forward (+)
97513 .. 99790
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000293.1_g000019.1.cds

Sequence Viewer

Length: 1626 bp
atggacactgaaggtaagacgaaggactcatataagactcgtcttgatatggaagagatggtcatcaagtctgatttacacctcaaatgtattgatggtgtgattaagtttagaccagcatattacacttttaatatagatgagaggaaaggtttttgtgagttctgtagttgtaccaaacttccagatggcatggcttcaaatatctctaattgtgtgaacagtgctgattctaagatttatggtttgaaaagtcacgattgccacattatattgcagcgacttcttcctgtagccttgcttgggtacttgtctaaagatgttcgtgaggtcattattaaattatgtttattctttaaggagttgacttccaagactttgagattggatgttttggaaaggttggataaggatattgtcgtactcctatgcaagttagagttgaacttcccaccctcatttttcaacattatgactcatttgccaattcacttggcttatgaggccatacttgctggaccagtacaatatcgatggatgtttccatttgagagaaaaatgcataacttaaaggattattgcagaaacaaagcccaccctgaaggatcaattgtggaaggttattgtgattgtgaatgcctgacattttgctccatgtactttcgtgatgttgagacaaagtttaaccaagtagacaggaaccatgatgtaagtgagagaaggatgggtttatctattttcacacagaatgttaagttgttaaagggagcagttgatgatgttctcagcctaactgactttgcaaggattcgatgggaacataaagcagaacttgagaggcaaaatattccaaacatagaaaaagaacaacaacagaagtttcataaatggtttttgcgacgtgttcaacagatgcaagttgagggttcaacagaagatgttgaatccttactatacttggccagtggacctcaacgtgaagtggcacgatatagtgggtgtatcgtcaatggcataaggtttcatactcagaaacgcgatgcaaataaaaaaactcaaaactatggagtggtagtcaaaggagagcatcgtggtaaaagtatagacttttatggtgttttgaaagatataattgtgttatcataccttggaaataatcaggtggtcgttttcaaatgtgattggctggatctcaatgcaagaaggggaattcaagttgatgagaaccagtttacaagtgttaattttaccaaaaaatggtatatgaatgatccatttgcattggcatgtcaaacacagcaggtatactatttgaaagatacaaagcatggtagtaattggcgtgttgtagaaaggtcgcagcctagagggatgtatgattttacagaaaaagaaactgaagtgggtgattcattagaggaggtagaagatccatatcagcaagagtcacatgggtatgacgattcagttgaagttgatgttggagagacgtcattacatagagatgacatggatatgatcgttgttaatttgaatgctaaagatagtgatgcagaagatggcgactttaatgatgaagataatgagttgatgtctaatgatgatatcgaggacgactctacgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transposase_21

Protein Analysis

541

Amino Acids

62.84

Weight (kDa)

5.26

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1493
Acc36I ACCTGC 1 cut(s) 1291
AccB7I CCANNNNNTGG 1 cut(s) 1257
AccI GTMKAC 2 cut(s) 693, 1305
AccII CGCG 1 cut(s) 1038
AclWI GGATC 4 cut(s) 613, 1197, 1265, 1424
AcoI YGGCCR 1 cut(s) 960
AcsI RAATTY 1 cut(s) 1209
AcuI CTGAAG 3 cut(s) 30, 621, 1419
AcyI GRCGYC 1 cut(s) 1490
AfaI GTAC 5 cut(s) 175, 308, 423, 525, 659
AfiI CCNNNNNNNGG 2 cut(s) 303, 1257
AflIII ACRYGT 1 cut(s) 901
AjiI CACGTC 1 cut(s) 902
AjuI GAANNNNNNNTTGG 2 cut(s) 1464, 1496
Alw26I GTCTC 2 cut(s) 668, 1481
AlwI GGATC 4 cut(s) 613, 1197, 1265, 1424
AoxI GGCC 2 cut(s) 504, 960
ApeKI GCWGC 2 cut(s) 277, 1360
ApoI RAATTY 1 cut(s) 1209
AspS9I GGNCC 2 cut(s) 518, 968
AsuHPI GGTGA 1 cut(s) 1418
AvaII GGWCC 2 cut(s) 518, 968
BalI TGGCCA 1 cut(s) 962
BbvI GCAGC 2 cut(s) 289, 1372
BccI CCATC 7 cut(s) 52, 89, 182, 528, 718, 807, 1553
BcoDI GTCTC 2 cut(s) 668, 1481
BfaI CTAG 1 cut(s) 1365
BfmI CTRYAG 2 cut(s) 166, 291
BfuAI ACCTGC 1 cut(s) 1291
BisI GCNGC 2 cut(s) 278, 1361
BlsI GCNGC 2 cut(s) 279, 1362
Bme18I GGWCC 2 cut(s) 518, 968
BmgBI CACGTC 1 cut(s) 902
BmgT120I GGNCC 2 cut(s) 518, 968
BmiI GGNNCC 1 cut(s) 701
BmsI GCATC 4 cut(s) 903, 1030, 1096, 1540
BplI GAGNNNNNCTC 1 cut(s) 1601
BpuEI CTTGAG 1 cut(s) 854
Bsa29I ATCGAT 1 cut(s) 532
BsaAI YACGTR 1 cut(s) 1623
BsaBI GATNNNNATC 2 cut(s) 62, 1434
BsaHI GRCGYC 1 cut(s) 1490
BsaJI CCNNGG 1 cut(s) 1147
BsaXI ACNNNNNCTCC 2 cut(s) 1059, 1089
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 1257
Bse1I ACTGG 3 cut(s) 521, 963, 1228
Bse8I GATNNNNATC 2 cut(s) 62, 1434
BseCI ATCGAT 1 cut(s) 532
BseDI CCNNGG 1 cut(s) 1147
BseGI GGATG 4 cut(s) 394, 543, 729, 1377
BseJI GATNNNNATC 2 cut(s) 62, 1434
BseLI CCNNNNNNNGG 2 cut(s) 303, 1257
BseMII CTCAG 2 cut(s) 799, 1043
BseNI ACTGG 3 cut(s) 521, 963, 1228
BseRI GAGGAG 1 cut(s) 1433
BseXI GCAGC 2 cut(s) 289, 1372
Bsh1236I CGCG 1 cut(s) 1038
BshFI GGCC 2 cut(s) 506, 962
BshVI ATCGAT 1 cut(s) 532
BslI CCNNNNNNNGG 2 cut(s) 303, 1257
BsmAI GTCTC 2 cut(s) 668, 1481
BsmBI CGTCTC 1 cut(s) 1481
BsmI GAATGC 2 cut(s) 641, 1540
BsnI GGCC 2 cut(s) 506, 962
Bsp143I GATC 5 cut(s) 605, 1189, 1270, 1429, 1518
BspANI GGCC 2 cut(s) 506, 962
BspCNI CTCAG 2 cut(s) 798, 1042
BspDI ATCGAT 1 cut(s) 532
BspFNI CGCG 1 cut(s) 1038
BspLI GGNNCC 1 cut(s) 701
BspMI ACCTGC 1 cut(s) 1291
BspPI GGATC 4 cut(s) 613, 1197, 1265, 1424
BsrI ACTGG 3 cut(s) 521, 963, 1228
BssECI CCNNGG 1 cut(s) 1147
BssMI GATC 5 cut(s) 605, 1189, 1270, 1429, 1518
BssNAI GTATAC 1 cut(s) 1306
BssNI GRCGYC 1 cut(s) 1490
BssT1I CCWWGG 1 cut(s) 1147
Bst1107I GTATAC 1 cut(s) 1306
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 1490
BstBAI YACGTR 1 cut(s) 1623
BstDEI CTNAG 3 cut(s) 234, 785, 1029
BstF5I GGATG 4 cut(s) 394, 543, 729, 1377
BstFNI CGCG 1 cut(s) 1038
BstKTI GATC 5 cut(s) 608, 1192, 1273, 1432, 1521
BstMAI GTCTC 2 cut(s) 668, 1481
BstMBI GATC 5 cut(s) 605, 1189, 1270, 1429, 1518
BstMWI GCNNNNNNNGC 2 cut(s) 503, 512
BstNSI RCATGY 1 cut(s) 1290
BstSFI CTRYAG 2 cut(s) 166, 291
BstUI CGCG 1 cut(s) 1038
BstV1I GCAGC 2 cut(s) 289, 1372
BstX2I RGATCY 2 cut(s) 1189, 1429
BstYI RGATCY 2 cut(s) 1189, 1429
BstZ17I GTATAC 1 cut(s) 1306
Bsu15I ATCGAT 1 cut(s) 532
BsuRI GGCC 2 cut(s) 506, 962
BsuTUI ATCGAT 1 cut(s) 532
BtgZI GCGATG 1 cut(s) 1053
BtrI CACGTC 1 cut(s) 902
BtsCI GGATG 4 cut(s) 394, 543, 729, 1377
BtsIMutI CAGTG 3 cut(s) 6, 229, 970
BveI ACCTGC 1 cut(s) 1291
Cfr13I GGNCC 2 cut(s) 518, 968
ClaI ATCGAT 1 cut(s) 532
Csp6I GTAC 5 cut(s) 174, 307, 422, 524, 658
CviAII CATG 7 cut(s) 193, 655, 704, 1287, 1328, 1451, 1510
CviJI RGCY 9 cut(s) 197, 296, 497, 506, 593, 789, 962, 1186, 1363
CviKI_1 RGCY 9 cut(s) 197, 296, 497, 506, 593, 789, 962, 1186, 1363
CviQI GTAC 5 cut(s) 174, 307, 422, 524, 658
DdeI CTNAG 3 cut(s) 234, 785, 1029
DpnI GATC 5 cut(s) 607, 1191, 1272, 1431, 1520
DpnII GATC 5 cut(s) 605, 1189, 1270, 1429, 1518
EaeI YGGCCR 1 cut(s) 960
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 1147
Eco32I GATATC 1 cut(s) 1606
Eco47I GGWCC 2 cut(s) 518, 968
Eco57I CTGAAG 3 cut(s) 30, 621, 1419
EcoRI GAATTC 1 cut(s) 1209
EcoRV GATATC 1 cut(s) 1606
EcoT14I CCWWGG 1 cut(s) 1147
EcoT22I ATGCAT 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 1147
Esp3I CGTCTC 1 cut(s) 1481
FaeI CATG 7 cut(s) 196, 658, 707, 1290, 1331, 1454, 1513
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FatI CATG 7 cut(s) 192, 654, 703, 1286, 1327, 1450, 1509
FblI GTMKAC 2 cut(s) 693, 1305
Fnu4HI GCNGC 2 cut(s) 278, 1361
FokI GGATG 4 cut(s) 401, 550, 736, 1384
Fsp4HI GCNGC 2 cut(s) 278, 1361
FspBI CTAG 1 cut(s) 1365
GluI GCNGC 2 cut(s) 278, 1361
HaeIII GGCC 2 cut(s) 506, 962
Hin1I GRCGYC 1 cut(s) 1490
Hin1II CATG 7 cut(s) 196, 658, 707, 1290, 1331, 1454, 1513
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HphI GGTGA 1 cut(s) 1418
Hpy166II GTNNAC 6 cut(s) 220, 366, 694, 968, 1233, 1306
Hpy188I TCNGA 2 cut(s) 73, 1032
Hpy188III TCNNGA 5 cut(s) 44, 185, 257, 326, 665
Hpy8I GTNNAC 6 cut(s) 220, 366, 694, 968, 1233, 1306
Hpy99I CGWCG 1 cut(s) 903
HpyAV CCTTC 6 cut(s) 5, 16, 596, 611, 714, 1197
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 4 cut(s) 901, 976, 1490, 1622
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 512
HpyF3I CTNAG 3 cut(s) 234, 785, 1029
HpySE526I ACGT 4 cut(s) 901, 976, 1490, 1622
Hsp92I GRCGYC 1 cut(s) 1490
Hsp92II CATG 7 cut(s) 196, 658, 707, 1290, 1331, 1454, 1513
Kzo9I GATC 5 cut(s) 605, 1189, 1270, 1429, 1518
LmnI GCTCC 2 cut(s) 656, 767
Lsp1109I GCAGC 2 cut(s) 289, 1372
LweI GCATC 4 cut(s) 903, 1030, 1096, 1540
MaeI CTAG 1 cut(s) 1365
MaeII ACGT 4 cut(s) 901, 976, 1490, 1622
MaeIII GTNAC 2 cut(s) 254, 1446
MalI GATC 5 cut(s) 607, 1191, 1272, 1431, 1520
MboI GATC 5 cut(s) 605, 1189, 1270, 1429, 1518
MboII GAAGA 6 cut(s) 65, 278, 947, 1439, 1568, 1589
MfeI CAATTG 1 cut(s) 609
MflI RGATCY 2 cut(s) 1189, 1429
MlsI TGGCCA 1 cut(s) 962
MluCI AATT 9 cut(s) 211, 341, 486, 609, 1131, 1209, 1243, 1336, 1528
MluNI TGGCCA 1 cut(s) 962
MlyI GAGTC 5 cut(s) 20, 31, 469, 1454, 1610
MmeI TCCRAC 2 cut(s) 384, 1462
Mox20I TGGCCA 1 cut(s) 962
Mph1103I ATGCAT 1 cut(s) 564
MscI TGGCCA 1 cut(s) 962
MslI CAYNNNNRTG 4 cut(s) 1285, 1455, 1503, 1514
Msp20I TGGCCA 1 cut(s) 962
MunI CAATTG 1 cut(s) 609
Mva1269I GAATGC 2 cut(s) 641, 1540
MvnI CGCG 1 cut(s) 1038
MwoI GCNNNNNNNGC 2 cut(s) 503, 512
NdeII GATC 5 cut(s) 605, 1189, 1270, 1429, 1518
NlaIII CATG 7 cut(s) 196, 658, 707, 1290, 1331, 1454, 1513
NlaIV GGNNCC 1 cut(s) 701
NmuCI GTSAC 2 cut(s) 254, 1446
NsiI ATGCAT 1 cut(s) 564
NspI RCATGY 1 cut(s) 1290
PctI GAATGC 2 cut(s) 641, 1540
PfeI GAWTC 5 cut(s) 230, 808, 944, 1409, 1463
PflMI CCANNNNNTGG 1 cut(s) 1257
PkrI GCNGC 2 cut(s) 279, 1362
PleI GAGTC 5 cut(s) 20, 31, 469, 1453, 1610
PpsI GAGTC 5 cut(s) 20, 31, 469, 1453, 1610
Ppu21I YACGTR 1 cut(s) 1623
PspN4I GGNNCC 1 cut(s) 701
PspPI GGNCC 2 cut(s) 518, 968
PsuI RGATCY 2 cut(s) 1189, 1429
RsaI GTAC 5 cut(s) 175, 308, 423, 525, 659
RsaNI GTAC 5 cut(s) 174, 307, 422, 524, 658
RseI CAYNNNNRTG 4 cut(s) 1285, 1455, 1503, 1514
SatI GCNGC 2 cut(s) 278, 1361
Sau3AI GATC 5 cut(s) 605, 1189, 1270, 1429, 1518
Sau96I GGNCC 2 cut(s) 518, 968
SchI GAGTC 5 cut(s) 20, 31, 469, 1454, 1610
SfaNI GCATC 4 cut(s) 903, 1030, 1096, 1540
SfcI CTRYAG 2 cut(s) 166, 291
SinI GGWCC 2 cut(s) 518, 968
SmiMI CAYNNNNRTG 4 cut(s) 1285, 1455, 1503, 1514
SmlI CTYRAG 1 cut(s) 833
SmoI CTYRAG 1 cut(s) 833
Sse9I AATT 9 cut(s) 211, 341, 486, 609, 1131, 1209, 1243, 1336, 1528
SspI AATATT 1 cut(s) 847
SspMI CTAG 1 cut(s) 1365
StyI CCWWGG 1 cut(s) 1147
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 4 cut(s) 904, 979, 1493, 1625
TaqI TCGA 3 cut(s) 532, 811, 1608
TasI AATT 9 cut(s) 211, 341, 486, 609, 1131, 1209, 1243, 1336, 1528
TatI WGTACW 2 cut(s) 523, 657
TfiI GAWTC 5 cut(s) 230, 808, 944, 1409, 1463
TscAI CASTG 3 cut(s) 13, 229, 970
TseFI GTSAC 2 cut(s) 254, 1446
TseI GCWGC 2 cut(s) 277, 1360
Tsp45I GTSAC 2 cut(s) 254, 1446
TspDTI ATGAA 5 cut(s) 872, 1013, 1280, 1401, 1590
TspRI CASTG 3 cut(s) 13, 229, 970
Van91I CCANNNNNTGG 1 cut(s) 1257
VpaK11BI GGWCC 2 cut(s) 518, 968
XapI RAATTY 1 cut(s) 1209
XceI RCATGY 1 cut(s) 1290
XmiI GTMKAC 2 cut(s) 693, 1305
XspI CTAG 1 cut(s) 1365
ZraI GACGTC 1 cut(s) 1491
Zsp2I ATGCAT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.