Rh5DG168300

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000178
Physical Location & Seq
Forward (+)
17896523 .. 17898671
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG168300.1

Sequence Viewer

Length: 1578 bp
ATGCTAATAGCTCTTTTTTTTCATGACAGGTTGTGTGCATATATATATATATATATATATATATATATCATTATGGCTAATGGTAGACAAGGTCCAAGGTTTCTACATCAATTGCGGACAAAAGCACTGCCACAGCACCAAATGCGATCATCTACTCAAAAGATTTCAAAGCTTGCAAAGTCTTTAAGTAAGCCTACAACACCAGCACAAGCACCGGCAGCCCCATTGCACTCATCAGTAGAGCAGATTATCACTTCCATTCCTACTCATGTTCCAAAACATCATTGTCCACCTCAAGTTCAATCATCACCACTTATGCGAATGCTAAGATCAGCTTCTGTTAAGCAAGGGTCAACTTCTATTAACCAAGGATCAACTTCTATTCAACAAGAATCAACTTCAACTGCAAATGCCACACAGCCTACTCAAGTTGCTTGTTCCCCCACGGTAGAAGAGGGCACTAATACTAATAGCAGTGCAGTTCGCAAGAAAGTACGTGGTGAGACTCGATGTCTTGAGCTATCCAAGAGGAAGCGTGATGGTGTTCAACTTGATATTGATATTCCAAAGCATACTATGAGAGCTGTAGGAACAAATTGTCAATTCTGCATTACTGGTATGGGGTGCTTTGTTCGAAAAAATGTTCCATTGCAAATTAAGAAGTGGTCTGAGCTCTCAAGAGAAGATGTTGCTTTGCTAATTCGTCATGCCCGTGAAAAATTCAAGTTGAGCAATGAGTCTCATGTGGATGAGGCAATTGAGAAACATATGATGAGATATTTTACCACTTGGCGCTATAATTTGCGTAAGAAATTTCTGAAATATGACTCAATAGAGGAAGCTGTAGAAAATCGACCTGAAGATGTGGAAGAGGAAGATTGGAACTATTTGATTGCAAATCTGTGGCAAGATGGAAAGTGGCTGGAAACAAGTGAAAAAAACAAGAAAAACAGAGATAAGTTGGAGATAACACATTGTGCAGGGACAAAGGCATTTAGTCGCCTTAGAACTGAAAATCGAAATCCTGAGAATGGAGAGGAAGTTGGTCGTATTGACCTTTTCAAGCTCACACGATATAGCGAAAAGAAATCTGCATGGGTTGGTGATACTGCAAAGAATGCTTTTGAAGAGATGAAGAATCTACAAAACGTCCCACAAATGAATGAAGAAACTGGTGAAATAATGACTGAAGATGAGATCTATGATAAAGTTCTTTCAAAAATTGTTGGTCCACCTCGATCAGGCTATATACGCGGCTTAGGAGCTGGGCCAAAGCCTAAAAGATCTAAACTTGCAGCAAATGATGCTCAACTGAGGGAGGCAAATCAAAGGGCAGATCAAGCAGAAAGACGAGCAATGCAGCTTGTAGAGGAGTTGATGGCTGTGAAGTCTACTGCAGCTCAGCAAAATGAGGAGTTAAAGACAGTCAAAGCTGATGCAGCTCAGCAAAATGAAGAGTTAAAGGCAGTAAAGGCTAGAGCTACTCAACAAAATGAAGAGTTAGAGGCACTAAAGGCAAGACAAAATCAGACTGACACACTTTTACTTAAATTGATGGCACAATTATCCCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

525

Amino Acids

59.71

Weight (kDa)

9.31

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 291 - 426 1.7e-17 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 85, 1391
AccII CGCG 1 cut(s) 1254
AciI CCGC 2 cut(s) 115, 1254
AclWI GGATC 1 cut(s) 379
AcsI RAATTY 2 cut(s) 719, 812
AcuI CTGAAG 2 cut(s) 879, 1209
AdeI CACNNNGTG 1 cut(s) 977
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 2 cut(s) 1031, 1241
AgsI TTSAA 9 cut(s) 168, 302, 386, 402, 548, 724, 1063, 1127, 1218
AhdI GACNNNNNGTC 1 cut(s) 510
Alw21I GWGCWC 1 cut(s) 675
Alw26I GTCTC 2 cut(s) 497, 744
AlwI GGATC 1 cut(s) 379
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 1 cut(s) 1268
ApeKI GCWGC 5 cut(s) 218, 1295, 1360, 1397, 1439
ApoI RAATTY 2 cut(s) 719, 812
AspLEI GCGC 1 cut(s) 795
AspS9I GGNCC 3 cut(s) 92, 1229, 1268
AsuHPI GGTGA 4 cut(s) 300, 512, 1115, 1187
AsuII TTCGAA 1 cut(s) 634
AvaII GGWCC 2 cut(s) 92, 1229
BaeGI GKGCMC 1 cut(s) 461
BanII GRGCYC 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 675
BbvI GCAGC 5 cut(s) 230, 1307, 1372, 1409, 1451
BccI CCATC 4 cut(s) 533, 905, 1372, 1549
BcoDI GTCTC 2 cut(s) 497, 744
BfaI CTAG 2 cut(s) 1476, 1576
BfmI CTRYAG 3 cut(s) 585, 843, 1395
BfoI RGCGCY 1 cut(s) 796
BglII AGATCT 2 cut(s) 1197, 1283
BisI GCNGC 6 cut(s) 219, 1255, 1296, 1361, 1398, 1440
BlpI GCTNAGC 2 cut(s) 1401, 1443
BlsI GCNGC 6 cut(s) 220, 1256, 1297, 1362, 1399, 1441
Bme18I GGWCC 2 cut(s) 92, 1229
BmeRI GACNNNNNGTC 1 cut(s) 510
BmgT120I GGNCC 3 cut(s) 92, 1229, 1268
BmsI GCATC 2 cut(s) 1294, 1426
Bpu10I CCTNAGC 1 cut(s) 1258
Bpu1102I GCTNAGC 2 cut(s) 1401, 1443
Bpu14I TTCGAA 1 cut(s) 634
BpuEI CTTGAG 4 cut(s) 279, 411, 536, 661
BsaAI YACGTR 1 cut(s) 497
BsaJI CCNNGG 3 cut(s) 95, 367, 444
BsaXI ACNNNNNCTCC 2 cut(s) 1026, 1056
Bsc4I CCNNNNNNNGG 2 cut(s) 1031, 1241
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 619, 1177
Bse3DI GCAATG 4 cut(s) 224, 647, 739, 1362
BseDI CCNNGG 3 cut(s) 95, 367, 444
BseGI GGATG 1 cut(s) 754
BseLI CCNNNNNNNGG 2 cut(s) 1031, 1241
BseMI GCAATG 4 cut(s) 224, 647, 739, 1362
BseMII CTCAG 5 cut(s) 660, 1017, 1304, 1415, 1457
BseNI ACTGG 2 cut(s) 619, 1177
BseRI GAGGAG 2 cut(s) 1385, 1427
BseSI GKGCMC 1 cut(s) 461
BseXI GCAGC 5 cut(s) 230, 1307, 1372, 1409, 1451
BseYI CCCAGC 1 cut(s) 1265
BsgI GTGCAG 2 cut(s) 498, 999
Bsh1236I CGCG 1 cut(s) 1254
BshFI GGCC 1 cut(s) 1270
BsiHKAI GWGCWC 1 cut(s) 675
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 2 cut(s) 997, 1136
BslI CCNNNNNNNGG 2 cut(s) 1031, 1241
BsmAI GTCTC 2 cut(s) 497, 744
BsmFI GGGAC 2 cut(s) 997, 1136
BsmI GAATGC 2 cut(s) 327, 1123
BsnI GGCC 1 cut(s) 1270
Bsp119I TTCGAA 1 cut(s) 634
Bsp1286I GDGCHC 2 cut(s) 461, 675
Bsp143I GATC 7 cut(s) 146, 329, 371, 1197, 1238, 1283, 1336
Bsp1720I GCTNAGC 2 cut(s) 1401, 1443
BspACI CCGC 2 cut(s) 115, 1254
BspANI GGCC 1 cut(s) 1270
BspCNI CTCAG 5 cut(s) 661, 1018, 1305, 1414, 1456
BspFNI CGCG 1 cut(s) 1254
BspHI TCATGA 1 cut(s) 22
BspMAI CTGCAG 1 cut(s) 1399
BspPI GGATC 1 cut(s) 379
BspT104I TTCGAA 1 cut(s) 634
BsrDI GCAATG 4 cut(s) 224, 647, 739, 1362
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 2 cut(s) 619, 1177
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 3 cut(s) 95, 367, 444
BssMI GATC 7 cut(s) 146, 329, 371, 1197, 1238, 1283, 1336
BssT1I CCWWGG 2 cut(s) 95, 367
Bst4CI ACNGT 2 cut(s) 448, 1426
Bst6I CTCTTC 5 cut(s) 447, 864, 1122, 1449, 1491
BstAPI GCANNNNNTGC 3 cut(s) 142, 1118, 1304
BstBAI YACGTR 1 cut(s) 497
BstBI TTCGAA 1 cut(s) 634
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 8 cut(s) 326, 669, 1004, 1026, 1258, 1313, 1401, 1443
BstDSI CCRYGG 1 cut(s) 444
BstENI CCTNNNNNAGG 1 cut(s) 1239
BstF5I GGATG 1 cut(s) 754
BstFNI CGCG 1 cut(s) 1254
BstH2I RGCGCY 1 cut(s) 796
BstHHI GCGC 1 cut(s) 795
BstKTI GATC 7 cut(s) 149, 332, 374, 1200, 1241, 1286, 1339
BstMAI GTCTC 2 cut(s) 497, 744
BstMBI GATC 7 cut(s) 146, 329, 371, 1197, 1238, 1283, 1336
BstMWI GCNNNNNNNGC 9 cut(s) 142, 218, 1118, 1251, 1304, 1340, 1439, 1472, 1514
BstSFI CTRYAG 3 cut(s) 585, 843, 1395
BstSLI GKGCMC 1 cut(s) 461
BstUI CGCG 1 cut(s) 1254
BstV1I GCAGC 5 cut(s) 230, 1307, 1372, 1409, 1451
BstX2I RGATCY 2 cut(s) 1197, 1283
BstYI RGATCY 2 cut(s) 1197, 1283
BsuRI GGCC 1 cut(s) 1270
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 1 cut(s) 754
BtsI GCAGTG 2 cut(s) 125, 481
BtsIMutI CAGTG 2 cut(s) 125, 481
Cac8I GCNNGC 1 cut(s) 174
CaiI CAGNNNCTG 1 cut(s) 338
CciI TCATGA 1 cut(s) 22
CfoI GCGC 1 cut(s) 795
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 3 cut(s) 92, 1229, 1268
Csp6I GTAC 1 cut(s) 494
CviAII CATG 5 cut(s) 23, 269, 707, 743, 1095
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 8 cut(s) 326, 669, 1004, 1026, 1258, 1313, 1401, 1443
DpnI GATC 7 cut(s) 148, 331, 373, 1199, 1240, 1285, 1338
DpnII GATC 7 cut(s) 146, 329, 371, 1197, 1238, 1283, 1336
DraIII CACNNNGTG 1 cut(s) 977
DriI GACNNNNNGTC 1 cut(s) 510
Eam1104I CTCTTC 5 cut(s) 447, 864, 1122, 1449, 1491
Eam1105I GACNNNNNGTC 1 cut(s) 510
EarI CTCTTC 5 cut(s) 447, 864, 1122, 1449, 1491
Ecl136II GAGCTC 1 cut(s) 673
Eco130I CCWWGG 2 cut(s) 95, 367
Eco24I GRGCYC 1 cut(s) 675
Eco47I GGWCC 2 cut(s) 92, 1229
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 2 cut(s) 879, 1209
EcoICRI GAGCTC 1 cut(s) 673
EcoNI CCTNNNNNAGG 1 cut(s) 1239
EcoT14I CCWWGG 2 cut(s) 95, 367
EcoT38I GRGCYC 1 cut(s) 675
ErhI CCWWGG 2 cut(s) 95, 367
FaeI CATG 5 cut(s) 26, 272, 710, 746, 1098
FalI AAGNNNNNCTT 2 cut(s) 319, 351
FaqI GGGAC 2 cut(s) 997, 1136
FatI CATG 5 cut(s) 22, 268, 706, 742, 1094
FauNDI CATATG 1 cut(s) 768
FblI GTMKAC 2 cut(s) 85, 1391
Fnu4HI GCNGC 6 cut(s) 219, 1255, 1296, 1361, 1398, 1440
FokI GGATG 1 cut(s) 761
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 6 cut(s) 219, 1255, 1296, 1361, 1398, 1440
FspBI CTAG 2 cut(s) 1476, 1576
GlaI GCGC 1 cut(s) 794
GluI GCNGC 6 cut(s) 219, 1255, 1296, 1361, 1398, 1440
GsaI CCCAGC 1 cut(s) 1269
HaeII RGCGCY 1 cut(s) 796
HaeIII GGCC 1 cut(s) 1270
HapII CCGG 1 cut(s) 215
HhaI GCGC 1 cut(s) 795
Hin1II CATG 5 cut(s) 26, 272, 710, 746, 1098
Hin6I GCGC 1 cut(s) 793
HinP1I GCGC 1 cut(s) 793
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 5 cut(s) 392, 505, 737, 827, 1138
HpaII CCGG 1 cut(s) 215
HphI GGTGA 4 cut(s) 300, 512, 1115, 1187
Hpy166II GTNNAC 5 cut(s) 86, 290, 354, 1232, 1392
Hpy188I TCNGA 3 cut(s) 670, 819, 1530
Hpy188III TCNNGA 4 cut(s) 23, 515, 678, 1025
Hpy8I GTNNAC 5 cut(s) 86, 290, 354, 1232, 1392
HpyCH4III ACNGT 2 cut(s) 448, 1426
HpyCH4IV ACGT 2 cut(s) 496, 1149
HpyF10VI GCNNNNNNNGC 9 cut(s) 142, 218, 1118, 1251, 1304, 1340, 1439, 1472, 1514
HpyF3I CTNAG 8 cut(s) 326, 669, 1004, 1026, 1258, 1313, 1401, 1443
HpySE526I ACGT 2 cut(s) 496, 1149
Hsp92II CATG 5 cut(s) 26, 272, 710, 746, 1098
HspAI GCGC 1 cut(s) 793
Kzo9I GATC 7 cut(s) 146, 329, 371, 1197, 1238, 1283, 1336
LmnI GCTCC 1 cut(s) 1262
Lsp1109I GCAGC 5 cut(s) 230, 1307, 1372, 1409, 1451
LweI GCATC 2 cut(s) 1294, 1426
MaeI CTAG 2 cut(s) 1476, 1576
MaeII ACGT 2 cut(s) 496, 1149
MalI GATC 7 cut(s) 148, 331, 373, 1199, 1240, 1285, 1338
MboI GATC 7 cut(s) 146, 329, 371, 1197, 1238, 1283, 1336
MfeI CAATTG 2 cut(s) 110, 756
MflI RGATCY 2 cut(s) 1197, 1283
MhlI GDGCHC 2 cut(s) 461, 675
MlyI GAGTC 3 cut(s) 499, 746, 821
MmeI TCCRAC 1 cut(s) 942
MseI TTAA 7 cut(s) 185, 342, 363, 657, 1418, 1460, 1548
MslI CAYNNNNRTG 2 cut(s) 711, 747
MspI CCGG 1 cut(s) 215
MunI CAATTG 2 cut(s) 110, 756
Mva1269I GAATGC 2 cut(s) 327, 1123
MvnI CGCG 1 cut(s) 1254
MwoI GCNNNNNNNGC 9 cut(s) 142, 218, 1118, 1251, 1304, 1340, 1439, 1472, 1514
NdeI CATATG 1 cut(s) 768
NdeII GATC 7 cut(s) 146, 329, 371, 1197, 1238, 1283, 1336
NlaIII CATG 5 cut(s) 26, 272, 710, 746, 1098
NspV TTCGAA 1 cut(s) 634
PagI TCATGA 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 709
PctI GAATGC 2 cut(s) 327, 1123
PfeI GAWTC 2 cut(s) 392, 1138
PflFI GACNNNGTC 1 cut(s) 90
PkrI GCNGC 6 cut(s) 220, 1256, 1297, 1362, 1399, 1441
PleI GAGTC 3 cut(s) 499, 745, 821
PpsI GAGTC 3 cut(s) 499, 745, 821
Ppu21I YACGTR 1 cut(s) 497
Psp124BI GAGCTC 1 cut(s) 675
PspFI CCCAGC 1 cut(s) 1265
PspPI GGNCC 3 cut(s) 92, 1229, 1268
PstI CTGCAG 1 cut(s) 1399
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 2 cut(s) 1197, 1283
PsyI GACNNNGTC 1 cut(s) 90
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 2 cut(s) 711, 747
SacI GAGCTC 1 cut(s) 675
SaqAI TTAA 7 cut(s) 185, 342, 363, 657, 1418, 1460, 1548
SatI GCNGC 6 cut(s) 219, 1255, 1296, 1361, 1398, 1440
Sau3AI GATC 7 cut(s) 146, 329, 371, 1197, 1238, 1283, 1336
Sau96I GGNCC 3 cut(s) 92, 1229, 1268
SchI GAGTC 3 cut(s) 499, 746, 821
SduI GDGCHC 2 cut(s) 461, 675
SfaNI GCATC 2 cut(s) 1294, 1426
SfcI CTRYAG 3 cut(s) 585, 843, 1395
SfuI TTCGAA 1 cut(s) 634
SinI GGWCC 2 cut(s) 92, 1229
SmiMI CAYNNNNRTG 2 cut(s) 711, 747
SmlI CTYRAG 4 cut(s) 294, 426, 515, 676
SmoI CTYRAG 4 cut(s) 294, 426, 515, 676
SsiI CCGC 2 cut(s) 115, 1254
SspMI CTAG 2 cut(s) 1476, 1576
SstI GAGCTC 1 cut(s) 675
StyI CCWWGG 2 cut(s) 95, 367
TaaI ACNGT 2 cut(s) 448, 1426
TaiI ACGT 2 cut(s) 499, 1152
TaqI TCGA 5 cut(s) 508, 634, 853, 1018, 1237
TauI GCSGC 1 cut(s) 1257
TfiI GAWTC 2 cut(s) 392, 1138
Tru1I TTAA 7 cut(s) 185, 342, 363, 657, 1418, 1460, 1548
Tru9I TTAA 7 cut(s) 185, 342, 363, 657, 1418, 1460, 1548
TscAI CASTG 2 cut(s) 132, 481
TseI GCWGC 5 cut(s) 218, 1295, 1360, 1397, 1439
TspDTI ATGAA 6 cut(s) 11, 1148, 1175, 1179, 1467, 1509
TspRI CASTG 2 cut(s) 132, 481
Tth111I GACNNNGTC 1 cut(s) 90
VpaK11BI GGWCC 2 cut(s) 92, 1229
XagI CCTNNNNNAGG 1 cut(s) 1239
XapI RAATTY 2 cut(s) 719, 812
XmiI GTMKAC 2 cut(s) 85, 1391
XspI CTAG 2 cut(s) 1476, 1576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.