RchiOBHm_Chr4g0402051

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000178
Physical Location & Seq
Forward (+)
20582977 .. 20588427
5451 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37391

Sequence Viewer

Length: 876 bp
ATGCAGTCATCAAGGACTCCATCTCCTCCTTCTTCTCCACATGTTATGAGATCGTCTCCACTTTCCCCTTCACCTCCACATATGCGCAGAGTCTTATCAACCTCTAATCAGCACACATCAACTCCAAGTGCGCATGAAGAGATAGCTGAATCTTCTCAAGTTGCTCATCCTCCTACCTTAGAAGAGAACATTGCAGCCCAGAAGAAACGACGTGGTGAGACTCGAGGTCTTGGGACAGCCAAGAAGAAATGTTGTAGTAATCCAATAGAGATTGATATTCCAGAGCATGTAAAACGAGCCGTAGGAGCGAATTGCCAGTCTTACATCACAGAGATAGGCTGCATTGTTAGGCAAAATGCTCCATTACAAGTTAAGCATTGGAGTGGAATTAGCAAGGATGATGTTGCTTTGATGGTTCGTCTTGTCCATGAGAAATTCAAATTGGAGAATGAACCACACGTGAATGAGGCTATTGAGGCAGACATGAAAAGAAGATATAGCACTTGGCGATACAATTTGCATAAGACATTTTTGCAATATGAATCAGTGGAGGAGGCACTTGAGAATAGACCTGAAAATGTGGGAGAAGATGACTGGAATTTTCTCATCAATTGGTGGCACGATGATCAGTGGCTGGAATTGAGCGGAAATAATAAGAAAAATAGAGATAAGCTAACAATAACTCATTGTGCTGGGACAAAAGCATTCAGTCGCATTAGATATGAAAATCAAAATCCTGAGACTGGAGAGGAGCTGAGCCGCATTGATATGTTCAAGCTGACAAGATTTAGGGAAAACAAGAAAACATGGGTCGGGGATGTCGCGGAACATGCTTATGGTGAGATGACAAAACTGAAAAATCCTGAGCAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

291

Amino Acids

33.46

Weight (kDa)

7.73

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 196 - 284 2.2e-12 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 86, 132
AccBSI CCGCTC 1 cut(s) 645
AccII CGCG 1 cut(s) 824
AciI CCGC 3 cut(s) 645, 760, 824
AcsI RAATTY 2 cut(s) 434, 598
AcvI CACGTG 1 cut(s) 460
AfiI CCNNNNNNNGG 1 cut(s) 743
AflIII ACRYGT 2 cut(s) 40, 457
AgsI TTSAA 2 cut(s) 439, 775
AhdI GACNNNNNGTC 1 cut(s) 225
AjiI CACGTC 1 cut(s) 212
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 4 cut(s) 146, 673, 754, 778
AluI AGCT 4 cut(s) 146, 673, 754, 778
Alw26I GTCTC 3 cut(s) 60, 212, 734
AlwNI CAGNNNCTG 1 cut(s) 634
Ama87I CYCGRG 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 194, 339
ApoI RAATTY 2 cut(s) 434, 598
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AspLEI GCGC 2 cut(s) 87, 133
AsuHPI GGTGA 3 cut(s) 63, 227, 851
AvaI CYCGRG 1 cut(s) 222
BbrPI CACGTG 1 cut(s) 460
BbvI GCAGC 2 cut(s) 206, 326
BccI CCATC 2 cut(s) 28, 406
BceAI ACGGC 1 cut(s) 284
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 3 cut(s) 60, 212, 734
BisI GCNGC 3 cut(s) 195, 340, 760
BlpI GCTNAGC 1 cut(s) 755
BlsI GCNGC 3 cut(s) 196, 341, 761
BmeRI GACNNNNNGTC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 222
BmgBI CACGTC 1 cut(s) 212
BplI GAGNNNNNCTC 2 cut(s) 40, 72
BpmI CTGGAG 1 cut(s) 765
Bpu10I CCTNAGC 1 cut(s) 864
Bpu1102I GCTNAGC 1 cut(s) 755
BpuEI CTTGAG 2 cut(s) 141, 581
BsaAI YACGTR 1 cut(s) 460
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 743
Bse1I ACTGG 3 cut(s) 316, 599, 748
Bse3DI GCAATG 1 cut(s) 189
BseGI GGATG 3 cut(s) 166, 403, 823
BseLI CCNNNNNNNGG 1 cut(s) 743
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 3 cut(s) 729, 746, 855
BseNI ACTGG 3 cut(s) 316, 599, 748
BseRI GAGGAG 3 cut(s) 15, 566, 764
BseXI GCAGC 2 cut(s) 206, 326
BseYI CCCAGC 1 cut(s) 692
Bsh1236I CGCG 1 cut(s) 824
BsiHKCI CYCGRG 1 cut(s) 222
BslFI GGGAC 2 cut(s) 247, 709
BslI CCNNNNNNNGG 1 cut(s) 743
BsmAI GTCTC 3 cut(s) 60, 212, 734
BsmBI CGTCTC 1 cut(s) 60
BsmFI GGGAC 2 cut(s) 247, 709
BsmI GAATGC 1 cut(s) 704
BsoBI CYCGRG 1 cut(s) 222
Bsp143I GATC 2 cut(s) 50, 625
Bsp1720I GCTNAGC 1 cut(s) 755
BspACI CCGC 3 cut(s) 645, 760, 824
BspCNI CTCAG 3 cut(s) 730, 747, 856
BspFNI CGCG 1 cut(s) 824
BsrBI CCGCTC 1 cut(s) 645
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 3 cut(s) 316, 599, 748
BssMI GATC 2 cut(s) 50, 625
Bst6I CTCTTC 2 cut(s) 132, 177
BstBAI YACGTR 1 cut(s) 460
BstDEI CTNAG 4 cut(s) 178, 738, 755, 864
BstF5I GGATG 3 cut(s) 166, 403, 823
BstFNI CGCG 1 cut(s) 824
BstHHI GCGC 2 cut(s) 87, 133
BstKTI GATC 2 cut(s) 53, 628
BstMAI GTCTC 3 cut(s) 60, 212, 734
BstMBI GATC 2 cut(s) 50, 625
BstMWI GCNNNNNNNGC 3 cut(s) 305, 476, 830
BstNSI RCATGY 3 cut(s) 44, 290, 833
BstUI CGCG 1 cut(s) 824
BstV1I GCAGC 2 cut(s) 206, 326
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 3 cut(s) 166, 403, 823
BtsIMutI CAGTG 2 cut(s) 552, 635
CaiI CAGNNNCTG 1 cut(s) 634
CfoI GCGC 2 cut(s) 87, 133
CviAII CATG 8 cut(s) 41, 134, 287, 428, 484, 807, 830, 873
DdeI CTNAG 4 cut(s) 178, 738, 755, 864
DpnI GATC 2 cut(s) 52, 627
DpnII GATC 2 cut(s) 50, 625
DriI GACNNNNNGTC 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 132, 177
Eam1105I GACNNNNNGTC 1 cut(s) 225
EarI CTCTTC 2 cut(s) 132, 177
Eco72I CACGTG 1 cut(s) 460
Eco88I CYCGRG 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 8 cut(s) 44, 137, 290, 431, 487, 810, 833, 876
FaqI GGGAC 2 cut(s) 247, 709
FatI CATG 8 cut(s) 40, 133, 286, 427, 483, 806, 829, 872
FauNDI CATATG 1 cut(s) 81
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 3 cut(s) 195, 340, 760
FokI GGATG 3 cut(s) 153, 410, 830
Fsp4HI GCNGC 3 cut(s) 195, 340, 760
FspAI RTGCGCAY 1 cut(s) 132
FspI TGCGCA 2 cut(s) 86, 132
GlaI GCGC 2 cut(s) 86, 132
GluI GCNGC 3 cut(s) 195, 340, 760
GsaI CCCAGC 1 cut(s) 696
GsuI CTGGAG 1 cut(s) 765
HhaI GCGC 2 cut(s) 87, 133
Hin1II CATG 8 cut(s) 44, 137, 290, 431, 487, 810, 833, 876
Hin6I GCGC 2 cut(s) 85, 131
HinP1I GCGC 2 cut(s) 85, 131
HinfI GANTC 5 cut(s) 16, 90, 149, 220, 542
HphI GGTGA 3 cut(s) 63, 227, 851
Hpy188III TCNNGA 3 cut(s) 281, 737, 863
Hpy99I CGWCG 1 cut(s) 213
HpyAV CCTTC 2 cut(s) 39, 78
HpyCH4IV ACGT 2 cut(s) 211, 459
HpyCH4V TGCA 5 cut(s) 4, 194, 342, 520, 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 476, 830
HpyF3I CTNAG 4 cut(s) 178, 738, 755, 864
HpySE526I ACGT 2 cut(s) 211, 459
Hsp92II CATG 8 cut(s) 44, 137, 290, 431, 487, 810, 833, 876
HspAI GCGC 2 cut(s) 85, 131
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 2 cut(s) 50, 625
LmnI GCTCC 3 cut(s) 305, 364, 751
LpnPI CCDG 9 cut(s) 212, 294, 329, 580, 585, 620, 678, 729, 750
Lsp1109I GCAGC 2 cut(s) 206, 326
MaeII ACGT 2 cut(s) 211, 459
MalI GATC 2 cut(s) 52, 627
MbiI CCGCTC 1 cut(s) 645
MboI GATC 2 cut(s) 50, 625
MboII GAAGA 8 cut(s) 24, 144, 149, 194, 214, 256, 504, 599
MfeI CAATTG 1 cut(s) 610
MluCI AATT 8 cut(s) 310, 387, 434, 440, 514, 598, 610, 638
MlyI GAGTC 3 cut(s) 10, 99, 214
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 4 cut(s) 381, 462, 767, 834
MunI CAATTG 1 cut(s) 610
Mva1269I GAATGC 1 cut(s) 704
MvnI CGCG 1 cut(s) 824
MwoI GCNNNNNNNGC 3 cut(s) 305, 476, 830
NdeI CATATG 1 cut(s) 81
NdeII GATC 2 cut(s) 50, 625
NlaIII CATG 8 cut(s) 44, 137, 290, 431, 487, 810, 833, 876
NsbI TGCGCA 2 cut(s) 86, 132
NspI RCATGY 3 cut(s) 44, 290, 833
PaeR7I CTCGAG 1 cut(s) 222
PciI ACATGT 1 cut(s) 40
PctI GAATGC 1 cut(s) 704
PfeI GAWTC 2 cut(s) 149, 542
PkrI GCNGC 3 cut(s) 196, 341, 761
PleI GAGTC 3 cut(s) 10, 98, 214
PmaCI CACGTG 1 cut(s) 460
PmlI CACGTG 1 cut(s) 460
PpsI GAGTC 3 cut(s) 10, 98, 214
Ppu21I YACGTR 1 cut(s) 460
PscI ACATGT 1 cut(s) 40
PspCI CACGTG 1 cut(s) 460
PspFI CCCAGC 1 cut(s) 692
PspXI VCTCGAGB 1 cut(s) 222
PstNI CAGNNNCTG 1 cut(s) 634
RseI CAYNNNNRTG 4 cut(s) 381, 462, 767, 834
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 3 cut(s) 195, 340, 760
Sau3AI GATC 2 cut(s) 50, 625
SchI GAGTC 3 cut(s) 10, 99, 214
Sfr274I CTCGAG 1 cut(s) 222
SlaI CTCGAG 1 cut(s) 222
SmiMI CAYNNNNRTG 4 cut(s) 381, 462, 767, 834
SmlI CTYRAG 3 cut(s) 156, 222, 560
SmoI CTYRAG 3 cut(s) 156, 222, 560
Sse9I AATT 8 cut(s) 310, 387, 434, 440, 514, 598, 610, 638
SsiI CCGC 3 cut(s) 645, 760, 824
TaiI ACGT 2 cut(s) 214, 462
TaqI TCGA 1 cut(s) 223
TasI AATT 8 cut(s) 310, 387, 434, 440, 514, 598, 610, 638
TauI GCSGC 1 cut(s) 762
TfiI GAWTC 2 cut(s) 149, 542
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 2 cut(s) 552, 635
TseI GCWGC 2 cut(s) 194, 339
TspDTI ATGAA 5 cut(s) 150, 465, 500, 555, 738
TspRI CASTG 2 cut(s) 552, 635
XapI RAATTY 2 cut(s) 434, 598
XceI RCATGY 3 cut(s) 44, 290, 833
XhoI CTCGAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.