bromo domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_24 | PF03004 | 267 - 340 | 5.4e-10 | Plant transposase (Ptta/En/Spm family) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 13 |
| AccII | CGCG | 1 cut(s) | 1055 |
| AciI | CCGC | 4 cut(s) | 43, 402, 1064, 1107 |
| AclWI | GGATC | 1 cut(s) | 307 |
| AcsI | RAATTY | 2 cut(s) | 647, 740 |
| AcuI | CTGAAG | 1 cut(s) | 807 |
| AdeI | CACNNNGTG | 1 cut(s) | 905 |
| AfaI | GTAC | 1 cut(s) | 423 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 959 |
| AgeI | ACCGGT | 1 cut(s) | 142 |
| AgsI | TTSAA | 7 cut(s) | 96, 230, 314, 330, 476, 652, 991 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 438 |
| AluBI | AGCT | 8 cut(s) | 100, 263, 448, 512, 601, 770, 994, 1049 |
| AluI | AGCT | 8 cut(s) | 100, 263, 448, 512, 601, 770, 994, 1049 |
| Alw21I | GWGCWC | 1 cut(s) | 603 |
| Alw26I | GTCTC | 2 cut(s) | 425, 672 |
| AlwI | GGATC | 1 cut(s) | 307 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 266 |
| AoxI | GGCC | 1 cut(s) | 1140 |
| ApoI | RAATTY | 2 cut(s) | 647, 740 |
| AscI | GGCGCGCC | 1 cut(s) | 1053 |
| AsiGI | ACCGGT | 1 cut(s) | 142 |
| AspLEI | GCGC | 3 cut(s) | 723, 1055, 1057 |
| AspS9I | GGNCC | 2 cut(s) | 20, 1140 |
| AsuHPI | GGTGA | 2 cut(s) | 228, 440 |
| AsuII | TTCGAA | 1 cut(s) | 562 |
| AvaII | GGWCC | 1 cut(s) | 20 |
| BanII | GRGCYC | 2 cut(s) | 603, 1030 |
| Bbv12I | GWGCWC | 1 cut(s) | 603 |
| BbvCI | CCTCAGC | 1 cut(s) | 1059 |
| BccI | CCATC | 3 cut(s) | 461, 833, 1035 |
| BceAI | ACGGC | 2 cut(s) | 1051, 1076 |
| BcoDI | GTCTC | 2 cut(s) | 425, 672 |
| BfaI | CTAG | 1 cut(s) | 1144 |
| BfmI | CTRYAG | 2 cut(s) | 513, 771 |
| BfoI | RGCGCY | 1 cut(s) | 724 |
| BisI | GCNGC | 2 cut(s) | 1064, 1107 |
| BlsI | GCNGC | 2 cut(s) | 1065, 1108 |
| Bme18I | GGWCC | 1 cut(s) | 20 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 438 |
| BmgT120I | GGNCC | 2 cut(s) | 20, 1140 |
| BmiI | GGNNCC | 1 cut(s) | 1141 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1059 |
| Bpu14I | TTCGAA | 1 cut(s) | 562 |
| BpuEI | CTTGAG | 4 cut(s) | 207, 339, 464, 589 |
| BsaAI | YACGTR | 1 cut(s) | 425 |
| BsaJI | CCNNGG | 3 cut(s) | 23, 295, 372 |
| BsaWI | WCCGGW | 1 cut(s) | 142 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 954, 984 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 959 |
| Bse118I | RCCGGY | 1 cut(s) | 142 |
| Bse1I | ACTGG | 1 cut(s) | 547 |
| Bse3DI | GCAATG | 3 cut(s) | 152, 575, 667 |
| BseDI | CCNNGG | 3 cut(s) | 23, 295, 372 |
| BseGI | GGATG | 1 cut(s) | 682 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 959 |
| BseMI | GCAATG | 3 cut(s) | 152, 575, 667 |
| BseMII | CTCAG | 4 cut(s) | 588, 945, 1073, 1140 |
| BseNI | ACTGG | 1 cut(s) | 547 |
| BsePI | GCGCGC | 1 cut(s) | 1053 |
| BsgI | GTGCAG | 2 cut(s) | 426, 927 |
| Bsh1236I | CGCG | 1 cut(s) | 1055 |
| BshFI | GGCC | 1 cut(s) | 1142 |
| BshTI | ACCGGT | 1 cut(s) | 142 |
| BsiHKAI | GWGCWC | 1 cut(s) | 603 |
| BsiSI | CCGG | 1 cut(s) | 143 |
| BslFI | GGGAC | 2 cut(s) | 925, 1082 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 959 |
| BsmAI | GTCTC | 2 cut(s) | 425, 672 |
| BsmFI | GGGAC | 2 cut(s) | 925, 1082 |
| BsmI | GAATGC | 1 cut(s) | 255 |
| BsnI | GGCC | 1 cut(s) | 1142 |
| Bsp119I | TTCGAA | 1 cut(s) | 562 |
| Bsp1286I | GDGCHC | 2 cut(s) | 603, 1030 |
| Bsp143I | GATC | 3 cut(s) | 74, 257, 299 |
| BspACI | CCGC | 4 cut(s) | 43, 402, 1064, 1107 |
| BspANI | GGCC | 1 cut(s) | 1142 |
| BspCNI | CTCAG | 4 cut(s) | 589, 946, 1072, 1139 |
| BspFNI | CGCG | 1 cut(s) | 1055 |
| BspLI | GGNNCC | 1 cut(s) | 1141 |
| BspPI | GGATC | 1 cut(s) | 307 |
| BspT104I | TTCGAA | 1 cut(s) | 562 |
| BsrDI | GCAATG | 3 cut(s) | 152, 575, 667 |
| BsrFI | RCCGGY | 1 cut(s) | 142 |
| BsrI | ACTGG | 1 cut(s) | 547 |
| BssAI | RCCGGY | 1 cut(s) | 142 |
| BssECI | CCNNGG | 3 cut(s) | 23, 295, 372 |
| BssHII | GCGCGC | 1 cut(s) | 1053 |
| BssMI | GATC | 3 cut(s) | 74, 257, 299 |
| BssT1I | CCWWGG | 2 cut(s) | 23, 295 |
| Bst4CI | ACNGT | 1 cut(s) | 376 |
| Bst6I | CTCTTC | 2 cut(s) | 375, 792 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 70 |
| BstBAI | YACGTR | 1 cut(s) | 425 |
| BstBI | TTCGAA | 1 cut(s) | 562 |
| BstC8I | GCNNGC | 3 cut(s) | 102, 1051, 1055 |
| BstDEI | CTNAG | 6 cut(s) | 254, 597, 932, 954, 1059, 1126 |
| BstDSI | CCRYGG | 1 cut(s) | 372 |
| BstF5I | GGATG | 1 cut(s) | 682 |
| BstFNI | CGCG | 1 cut(s) | 1055 |
| BstH2I | RGCGCY | 1 cut(s) | 724 |
| BstHHI | GCGC | 3 cut(s) | 723, 1055, 1057 |
| BstKTI | GATC | 3 cut(s) | 77, 260, 302 |
| BstMAI | GTCTC | 2 cut(s) | 425, 672 |
| BstMBI | GATC | 3 cut(s) | 74, 257, 299 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 70, 146, 1063, 1069 |
| BstSFI | CTRYAG | 2 cut(s) | 513, 771 |
| BstUI | CGCG | 1 cut(s) | 1055 |
| BsuRI | GGCC | 1 cut(s) | 1142 |
| BtgI | CCRYGG | 1 cut(s) | 372 |
| BtsCI | GGATG | 1 cut(s) | 682 |
| BtsI | GCAGTG | 2 cut(s) | 53, 1086 |
| BtsIMutI | CAGTG | 2 cut(s) | 53, 1086 |
| Cac8I | GCNNGC | 3 cut(s) | 102, 1051, 1055 |
| CaiI | CAGNNNCTG | 1 cut(s) | 266 |
| CfoI | GCGC | 3 cut(s) | 723, 1055, 1057 |
| Cfr10I | RCCGGY | 1 cut(s) | 142 |
| Cfr13I | GGNCC | 2 cut(s) | 20, 1140 |
| Csp6I | GTAC | 1 cut(s) | 422 |
| CspAI | ACCGGT | 1 cut(s) | 142 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 21, 56 |
| CviAII | CATG | 4 cut(s) | 197, 635, 671, 1023 |
| CviQI | GTAC | 1 cut(s) | 422 |
| DdeI | CTNAG | 6 cut(s) | 254, 597, 932, 954, 1059, 1126 |
| DpnI | GATC | 3 cut(s) | 76, 259, 301 |
| DpnII | GATC | 3 cut(s) | 74, 257, 299 |
| DraIII | CACNNNGTG | 1 cut(s) | 905 |
| DriI | GACNNNNNGTC | 1 cut(s) | 438 |
| Eam1104I | CTCTTC | 2 cut(s) | 375, 792 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 438 |
| EarI | CTCTTC | 2 cut(s) | 375, 792 |
| Ecl136II | GAGCTC | 1 cut(s) | 601 |
| Eco130I | CCWWGG | 2 cut(s) | 23, 295 |
| Eco24I | GRGCYC | 2 cut(s) | 603, 1030 |
| Eco47I | GGWCC | 1 cut(s) | 20 |
| Eco53kI | GAGCTC | 1 cut(s) | 601 |
| Eco57I | CTGAAG | 1 cut(s) | 807 |
| EcoICRI | GAGCTC | 1 cut(s) | 601 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1140 |
| EcoT14I | CCWWGG | 2 cut(s) | 23, 295 |
| EcoT38I | GRGCYC | 2 cut(s) | 603, 1030 |
| ErhI | CCWWGG | 2 cut(s) | 23, 295 |
| FaeI | CATG | 4 cut(s) | 200, 638, 674, 1026 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 247, 279 |
| FaqI | GGGAC | 2 cut(s) | 925, 1082 |
| FatI | CATG | 4 cut(s) | 196, 634, 670, 1022 |
| FauNDI | CATATG | 1 cut(s) | 696 |
| FblI | GTMKAC | 1 cut(s) | 13 |
| Fnu4HI | GCNGC | 2 cut(s) | 1064, 1107 |
| FokI | GGATG | 1 cut(s) | 689 |
| FriOI | GRGCYC | 2 cut(s) | 603, 1030 |
| Fsp4HI | GCNGC | 2 cut(s) | 1064, 1107 |
| FspBI | CTAG | 1 cut(s) | 1144 |
| GlaI | GCGC | 3 cut(s) | 722, 1054, 1056 |
| GluI | GCNGC | 2 cut(s) | 1064, 1107 |
| HaeII | RGCGCY | 1 cut(s) | 724 |
| HaeIII | GGCC | 1 cut(s) | 1142 |
| HapII | CCGG | 1 cut(s) | 143 |
| HhaI | GCGC | 3 cut(s) | 723, 1055, 1057 |
| Hin1II | CATG | 4 cut(s) | 200, 638, 674, 1026 |
| Hin6I | GCGC | 3 cut(s) | 721, 1053, 1055 |
| HinP1I | GCGC | 3 cut(s) | 721, 1053, 1055 |
| HincII | GTYRAC | 1 cut(s) | 282 |
| HindII | GTYRAC | 1 cut(s) | 282 |
| HindIII | AAGCTT | 1 cut(s) | 98 |
| HinfI | GANTC | 5 cut(s) | 320, 433, 665, 755, 1130 |
| HpaII | CCGG | 1 cut(s) | 143 |
| HphI | GGTGA | 2 cut(s) | 228, 440 |
| Hpy166II | GTNNAC | 3 cut(s) | 14, 218, 282 |
| Hpy188I | TCNGA | 3 cut(s) | 598, 747, 1129 |
| Hpy188III | TCNNGA | 3 cut(s) | 443, 606, 953 |
| Hpy8I | GTNNAC | 3 cut(s) | 14, 218, 282 |
| Hpy99I | CGWCG | 1 cut(s) | 1072 |
| HpyAV | CCTTC | 3 cut(s) | 1089, 1110, 1128 |
| HpyCH4III | ACNGT | 1 cut(s) | 376 |
| HpyCH4IV | ACGT | 1 cut(s) | 424 |
| HpyCH4V | TGCA | 8 cut(s) | 104, 157, 335, 407, 580, 824, 908, 1022 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 70, 146, 1063, 1069 |
| HpyF3I | CTNAG | 6 cut(s) | 254, 597, 932, 954, 1059, 1126 |
| HpySE526I | ACGT | 1 cut(s) | 424 |
| Hsp92II | CATG | 4 cut(s) | 200, 638, 674, 1026 |
| HspAI | GCGC | 3 cut(s) | 721, 1053, 1055 |
| Kzo9I | GATC | 3 cut(s) | 74, 257, 299 |
| LpnPI | CCDG | 8 cut(s) | 144, 156, 528, 798, 836, 894, 966, 1035 |
| MaeI | CTAG | 1 cut(s) | 1144 |
| MaeII | ACGT | 1 cut(s) | 424 |
| MaeIII | GTNAC | 1 cut(s) | 385 |
| MalI | GATC | 3 cut(s) | 76, 259, 301 |
| MboI | GATC | 3 cut(s) | 74, 257, 299 |
| MboII | GAAGA | 5 cut(s) | 392, 623, 800, 809, 815 |
| MfeI | CAATTG | 2 cut(s) | 38, 684 |
| MhlI | GDGCHC | 2 cut(s) | 603, 1030 |
| MluCI | AATT | 9 cut(s) | 38, 523, 530, 582, 627, 647, 684, 727, 740 |
| MlyI | GAGTC | 3 cut(s) | 427, 674, 749 |
| MmeI | TCCRAC | 1 cut(s) | 870 |
| MseI | TTAA | 4 cut(s) | 113, 270, 291, 585 |
| MslI | CAYNNNNRTG | 2 cut(s) | 639, 675 |
| MspA1I | CMGCKG | 2 cut(s) | 1049, 1109 |
| MspI | CCGG | 1 cut(s) | 143 |
| MunI | CAATTG | 2 cut(s) | 38, 684 |
| Mva1269I | GAATGC | 1 cut(s) | 255 |
| MvnI | CGCG | 1 cut(s) | 1055 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 70, 146, 1063, 1069 |
| NdeI | CATATG | 1 cut(s) | 696 |
| NdeII | GATC | 3 cut(s) | 74, 257, 299 |
| NlaIII | CATG | 4 cut(s) | 200, 638, 674, 1026 |
| NlaIV | GGNNCC | 1 cut(s) | 1141 |
| NmuCI | GTSAC | 1 cut(s) | 385 |
| NspV | TTCGAA | 1 cut(s) | 562 |
| PalAI | GGCGCGCC | 1 cut(s) | 1053 |
| PauI | GCGCGC | 1 cut(s) | 1053 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 637 |
| PctI | GAATGC | 1 cut(s) | 255 |
| PfeI | GAWTC | 2 cut(s) | 320, 1130 |
| PflFI | GACNNNGTC | 1 cut(s) | 18 |
| PinAI | ACCGGT | 1 cut(s) | 142 |
| PkrI | GCNGC | 2 cut(s) | 1065, 1108 |
| PleI | GAGTC | 3 cut(s) | 427, 673, 749 |
| PpsI | GAGTC | 3 cut(s) | 427, 673, 749 |
| Ppu21I | YACGTR | 1 cut(s) | 425 |
| Psp124BI | GAGCTC | 1 cut(s) | 603 |
| PspN4I | GGNNCC | 1 cut(s) | 1141 |
| PspPI | GGNCC | 2 cut(s) | 20, 1140 |
| PstNI | CAGNNNCTG | 1 cut(s) | 266 |
| PsyI | GACNNNGTC | 1 cut(s) | 18 |
| PteI | GCGCGC | 1 cut(s) | 1053 |
| PvuII | CAGCTG | 1 cut(s) | 1049 |
| RsaI | GTAC | 1 cut(s) | 423 |
| RsaNI | GTAC | 1 cut(s) | 422 |
| RseI | CAYNNNNRTG | 2 cut(s) | 639, 675 |
| SacI | GAGCTC | 1 cut(s) | 603 |
| SaqAI | TTAA | 4 cut(s) | 113, 270, 291, 585 |
| SatI | GCNGC | 2 cut(s) | 1064, 1107 |
| Sau3AI | GATC | 3 cut(s) | 74, 257, 299 |
| Sau96I | GGNCC | 2 cut(s) | 20, 1140 |
| SchI | GAGTC | 3 cut(s) | 427, 674, 749 |
| SduI | GDGCHC | 2 cut(s) | 603, 1030 |
| SfcI | CTRYAG | 2 cut(s) | 513, 771 |
| SfuI | TTCGAA | 1 cut(s) | 562 |
| SgsI | GGCGCGCC | 1 cut(s) | 1053 |
| SinI | GGWCC | 1 cut(s) | 20 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 639, 675 |
| SmlI | CTYRAG | 4 cut(s) | 222, 354, 443, 604 |
| SmoI | CTYRAG | 4 cut(s) | 222, 354, 443, 604 |
| Sse9I | AATT | 9 cut(s) | 38, 523, 530, 582, 627, 647, 684, 727, 740 |
| SsiI | CCGC | 4 cut(s) | 43, 402, 1064, 1107 |
| SspMI | CTAG | 1 cut(s) | 1144 |
| SstI | GAGCTC | 1 cut(s) | 603 |
| StyI | CCWWGG | 2 cut(s) | 23, 295 |
| TaaI | ACNGT | 1 cut(s) | 376 |
| TaiI | ACGT | 1 cut(s) | 427 |
| TaqI | TCGA | 4 cut(s) | 436, 562, 781, 946 |
| TasI | AATT | 9 cut(s) | 38, 523, 530, 582, 627, 647, 684, 727, 740 |
| TauI | GCSGC | 2 cut(s) | 1066, 1109 |
| TfiI | GAWTC | 2 cut(s) | 320, 1130 |
| Tru1I | TTAA | 4 cut(s) | 113, 270, 291, 585 |
| Tru9I | TTAA | 4 cut(s) | 113, 270, 291, 585 |
| TscAI | CASTG | 2 cut(s) | 60, 1093 |
| TseFI | GTSAC | 1 cut(s) | 385 |
| Tsp45I | GTSAC | 1 cut(s) | 385 |
| TspRI | CASTG | 2 cut(s) | 60, 1093 |
| Tth111I | GACNNNGTC | 1 cut(s) | 18 |
| VpaK11BI | GGWCC | 1 cut(s) | 20 |
| XapI | RAATTY | 2 cut(s) | 647, 740 |
| XmiI | GTMKAC | 1 cut(s) | 13 |
| XspI | CTAG | 1 cut(s) | 1144 |