Rh1CG091700

Domain of unknown function (DUF4216)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000178
Physical Location & Seq
Forward (+)
19567843 .. 19577482
9640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG091700.1

Sequence Viewer

Length: 801 bp
ATGAATTTCGCAATTGCCCACATGAAGCCAGGGTCTGATTTGATACCTTGTCCGTGCATGGATTGCAATAATTTTCGTAAATACAGCCCAGACCAAGTTGAGGATCATTTATATGCAAATGGAATGGCTAAGGATTACACTAAGTGGACAGATCATGGAGAAAATGATGATGATTTTGAACTAGAAGATGATATTTTGGAATCTGAAAATGAAGAGGATGTTGATGATGTAGTTGAAATGTTAAATGATTTCCAAGCTCATGATGATAGGGAATCTCAAGAACATAATGTTAAGTTGTTAAAGGGAGCAGTTGATGATGTTCTTAGCCTAACTGACTTTGCAAGGATTCGATGGTATGTGCTGAATAATTGTGATGAAGTACTGCCATATATAAGGGAACATAAAGCAGAACTTGAGAGGCAAAATATTCCAAACATAGAAAAAGAACAACAACAGAAGTTTCATAAATGGTTTTTGCGACGTGTTCAACAGATGCAAGTTGAGGGTTCAACAGAAGATGTTGAATCCTTACTATACTTGGCCAGTGGACCTCAACGTGAAGTGGCACGATATAGTGGGTGTATCGTCAATGGCATAAGGTTTCATACTCAGAAACGCGATGCAAATAAAAAAACTCAAAACTATGGAGTGGTAGTCAAAGGAGAGCATCGTGGGTACATCAATGCCCTCCGTATCGTCATCCTTAAATCGGCCAGATTCAATCAAGTTCTTGACTTTTCTCTCACTGTCATAAAAGTGATTAAGTGTAGAACACTTTTGAAGATTTTCCCTGCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218

Protein Analysis

266

Amino Acids

31.03

Weight (kDa)

5.25

Isoelectric Point (pI)

30.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 2 - 54 2.4e-13 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 618
AclWI GGATC 1 cut(s) 111
AcoI YGGCCR 2 cut(s) 540, 711
AcsI RAATTY 1 cut(s) 4
AdeI CACNNNGTG 1 cut(s) 144
AfaI GTAC 2 cut(s) 381, 677
AfiI CCNNNNNNNGG 2 cut(s) 100, 709
AflIII ACRYGT 1 cut(s) 481
AgsI TTSAA 7 cut(s) 179, 236, 488, 510, 524, 721, 781
AjiI CACGTC 1 cut(s) 482
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 2 cut(s) 540, 711
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 785
AspS9I GGNCC 1 cut(s) 548
AvaII GGWCC 1 cut(s) 548
BalI TGGCCA 1 cut(s) 542
BccI CCATC 1 cut(s) 345
BciT130I CCWGG 1 cut(s) 30
BfaI CTAG 1 cut(s) 182
BmcAI AGTACT 1 cut(s) 381
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 548
BmgBI CACGTC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 548
BmrFI CCNGG 1 cut(s) 30
BmsI GCATC 3 cut(s) 483, 610, 676
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 2 cut(s) 261, 434
BsaJI CCNNGG 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 639, 669
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 709
Bse1I ACTGG 1 cut(s) 543
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 2 cut(s) 223, 699
BseLI CCNNNNNNNGG 2 cut(s) 100, 709
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 618
BshFI GGCC 2 cut(s) 542, 713
BslI CCNNNNNNNGG 2 cut(s) 100, 709
BsnI GGCC 2 cut(s) 542, 713
Bsp143I GATC 2 cut(s) 103, 151
BspANI GGCC 2 cut(s) 542, 713
BspCNI CTCAG 1 cut(s) 622
BspFNI CGCG 1 cut(s) 618
BspHI TCATGA 1 cut(s) 259
BspPI GGATC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 543
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 103, 151
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 748
Bst6I CTCTTC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 63
BstDEI CTNAG 4 cut(s) 129, 141, 323, 609
BstF5I GGATG 2 cut(s) 223, 699
BstFNI CGCG 1 cut(s) 618
BstKTI GATC 2 cut(s) 106, 154
BstMBI GATC 2 cut(s) 103, 151
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstUI CGCG 1 cut(s) 618
BsuRI GGCC 2 cut(s) 542, 713
BtgZI GCGATG 1 cut(s) 633
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 2 cut(s) 223, 699
BtsIMutI CAGTG 2 cut(s) 550, 744
CaiI CAGNNNCTG 1 cut(s) 35
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 548
Csp6I GTAC 2 cut(s) 380, 676
CviAII CATG 4 cut(s) 22, 58, 155, 260
CviJI RGCY 7 cut(s) 28, 87, 128, 257, 327, 542, 713
CviKI_1 RGCY 7 cut(s) 28, 87, 128, 257, 327, 542, 713
CviQI GTAC 2 cut(s) 380, 676
DdeI CTNAG 4 cut(s) 129, 141, 323, 609
DpnI GATC 2 cut(s) 105, 153
DpnII GATC 2 cut(s) 103, 151
DraIII CACNNNGTG 1 cut(s) 144
EaeI YGGCCR 2 cut(s) 540, 711
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 28
FaeI CATG 4 cut(s) 25, 61, 158, 263
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FatI CATG 4 cut(s) 21, 57, 154, 259
FokI GGATG 2 cut(s) 230, 686
FspBI CTAG 1 cut(s) 182
HaeIII GGCC 2 cut(s) 542, 713
Hin1II CATG 4 cut(s) 25, 61, 158, 263
HinfI GANTC 5 cut(s) 200, 272, 346, 524, 717
Hpy166II GTNNAC 2 cut(s) 147, 548
Hpy188I TCNGA 4 cut(s) 37, 205, 612, 800
Hpy188III TCNNGA 3 cut(s) 260, 278, 731
Hpy8I GTNNAC 2 cut(s) 147, 548
Hpy99I CGWCG 1 cut(s) 483
HpyCH4III ACNGT 1 cut(s) 748
HpyCH4IV ACGT 2 cut(s) 481, 556
HpyCH4V TGCA 6 cut(s) 57, 66, 116, 341, 496, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 4 cut(s) 129, 141, 323, 609
HpySE526I ACGT 2 cut(s) 481, 556
Hsp92II CATG 4 cut(s) 25, 61, 158, 263
Kzo9I GATC 2 cut(s) 103, 151
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 5 cut(s) 15, 42, 102, 556, 727
LweI GCATC 3 cut(s) 483, 610, 676
MaeI CTAG 1 cut(s) 182
MaeII ACGT 2 cut(s) 481, 556
MalI GATC 2 cut(s) 105, 153
MboI GATC 2 cut(s) 103, 151
MboII GAAGA 4 cut(s) 197, 224, 527, 793
MfeI CAATTG 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 4 cut(s) 4, 12, 70, 367
MluNI TGGCCA 1 cut(s) 542
MnlI CCTC 6 cut(s) 94, 208, 411, 496, 561, 698
Mox20I TGGCCA 1 cut(s) 542
MroXI GAANNNNTTC 1 cut(s) 785
MscI TGGCCA 1 cut(s) 542
MseI TTAA 5 cut(s) 242, 291, 299, 705, 762
MslI CAYNNNNRTG 2 cut(s) 111, 755
Msp20I TGGCCA 1 cut(s) 542
MspR9I CCNGG 1 cut(s) 30
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 618
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 2 cut(s) 103, 151
NlaIII CATG 4 cut(s) 25, 61, 158, 263
PagI TCATGA 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 785
PfeI GAWTC 5 cut(s) 200, 272, 346, 524, 717
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspPI GGNCC 1 cut(s) 548
PstNI CAGNNNCTG 1 cut(s) 35
RsaI GTAC 2 cut(s) 381, 677
RsaNI GTAC 2 cut(s) 380, 676
RseI CAYNNNNRTG 2 cut(s) 111, 755
SaqAI TTAA 5 cut(s) 242, 291, 299, 705, 762
Sau3AI GATC 2 cut(s) 103, 151
Sau96I GGNCC 1 cut(s) 548
ScaI AGTACT 1 cut(s) 381
ScrFI CCNGG 1 cut(s) 30
SetI ASST 6 cut(s) 49, 259, 484, 553, 559, 602
SfaNI GCATC 3 cut(s) 483, 610, 676
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 2 cut(s) 111, 755
SmlI CTYRAG 2 cut(s) 276, 413
SmoI CTYRAG 2 cut(s) 276, 413
Sse9I AATT 4 cut(s) 4, 12, 70, 367
SspI AATATT 1 cut(s) 427
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 748
TaiI ACGT 2 cut(s) 484, 559
TaqI TCGA 1 cut(s) 349
TasI AATT 4 cut(s) 4, 12, 70, 367
TatI WGTACW 1 cut(s) 379
TfiI GAWTC 5 cut(s) 200, 272, 346, 524, 717
Tru1I TTAA 5 cut(s) 242, 291, 299, 705, 762
Tru9I TTAA 5 cut(s) 242, 291, 299, 705, 762
TscAI CASTG 2 cut(s) 550, 751
TspDTI ATGAA 6 cut(s) 17, 38, 225, 390, 452, 593
TspGWI ACGGA 2 cut(s) 42, 680
TspRI CASTG 2 cut(s) 550, 751
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 1 cut(s) 4
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 1 cut(s) 182
ZrmI AGTACT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.