Rw4G008510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000178
Physical Location & Seq
Forward (+)
18711196 .. 18714627
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008510.1

Sequence Viewer

Length: 501 bp
ATGGGGGAAGAGTATGATGATGAATTGGAAAATGATGACATAATAGAAGAGGATAATGGAGAGGATGTTGAGGAAGATGTTGATGATGTAGTTGTGCATGATATCAGGCTGACCCAACAAGTGTACTATTTACGAGATACTAGGCTTGGTAATAATTGGCGTGTCGTAGAGATATCACAACCTCGAGGGAATTATGATGCTGTAGAAAAAGAAGCAGAAGAAAATGAGGTATGTGATTCAGCAGTGCTGGCAGAGGATCCCTATCAACAAGAGTTGCATGATTTTATCAATCCTATTGAGGTTAATGATGGCTACGTGTCATTAAGTAGGGATGACATGGAAATGATTGTTGTGGATTTGAATGCCAAAAGACAACGAAGAGAAAATGATAGCTTCATTAATGATGATTGTGACGCTGAAGATGGTGGCTCTAGTGATGACAATGTTGAGGGTGAATATGTCTCATCTGAGGATGATATTCATGATGCTTATGTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

19.09

Weight (kDa)

4.05

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 183
AclWI GGATC 2 cut(s) 251, 264
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 1 cut(s) 361
AluBI AGCT 1 cut(s) 393
AluI AGCT 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 466
AlwI GGATC 2 cut(s) 251, 264
Ama87I CYCGRG 1 cut(s) 183
AseI ATTAAT 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 464
AvaI CYCGRG 1 cut(s) 183
BamHI GGATCC 1 cut(s) 256
BccI CCATC 2 cut(s) 302, 416
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 2 cut(s) 141, 432
BfmI CTRYAG 1 cut(s) 201
BmeT110I CYCGRG 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 258
BmsI GCATC 2 cut(s) 187, 475
BsaAI YACGTR 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse8I GATNNNNATC 1 cut(s) 261
BseGI GGATG 3 cut(s) 70, 337, 478
BseJI GATNNNNATC 1 cut(s) 261
BseMII CTCAG 1 cut(s) 459
BsiHKCI CYCGRG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 183
Bsp143I GATC 1 cut(s) 256
BspCNI CTCAG 1 cut(s) 460
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 2 cut(s) 251, 264
BssMI GATC 1 cut(s) 256
Bst6I CTCTTC 3 cut(s) 3, 42, 373
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 3 cut(s) 70, 337, 478
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BtsCI GGATG 3 cut(s) 70, 337, 478
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 249
CciI TCATGA 1 cut(s) 481
CseI GACGC 1 cut(s) 422
Csp6I GTAC 1 cut(s) 124
CviAII CATG 4 cut(s) 98, 278, 337, 482
CviJI RGCY 5 cut(s) 109, 145, 312, 393, 429
CviKI_1 RGCY 5 cut(s) 109, 145, 312, 393, 429
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 468
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 3 cut(s) 3, 42, 373
EarI CTCTTC 3 cut(s) 3, 42, 373
Eco32I GATATC 2 cut(s) 103, 174
Eco57I CTGAAG 1 cut(s) 438
Eco88I CYCGRG 1 cut(s) 183
EcoRV GATATC 2 cut(s) 103, 174
FaeI CATG 4 cut(s) 101, 281, 340, 485
FatI CATG 4 cut(s) 97, 277, 336, 481
FokI GGATG 3 cut(s) 77, 344, 485
FspBI CTAG 2 cut(s) 141, 432
HgaI GACGC 1 cut(s) 422
Hin1II CATG 4 cut(s) 101, 281, 340, 485
HinfI GANTC 1 cut(s) 236
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 469
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 2 cut(s) 97, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 4 cut(s) 101, 281, 340, 485
Kzo9I GATC 1 cut(s) 256
LpnPI CCDG 2 cut(s) 91, 233
LweI GCATC 2 cut(s) 187, 475
MaeI CTAG 2 cut(s) 141, 432
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 410
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 6 cut(s) 20, 59, 86, 230, 390, 431
MflI RGATCY 1 cut(s) 256
MluCI AATT 3 cut(s) 23, 154, 190
MseI TTAA 3 cut(s) 303, 323, 399
MslI CAYNNNNRTG 1 cut(s) 341
Mva1269I GAATGC 1 cut(s) 367
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 1 cut(s) 256
NlaIII CATG 4 cut(s) 101, 281, 340, 485
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 410
PaeR7I CTCGAG 1 cut(s) 183
PagI TCATGA 1 cut(s) 481
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 1 cut(s) 236
Ppu21I YACGTR 1 cut(s) 316
PshBI ATTAAT 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 258
PspXI VCTCGAGB 1 cut(s) 183
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 3 cut(s) 303, 323, 399
Sau3AI GATC 1 cut(s) 256
SetI ASST 5 cut(s) 184, 231, 303, 318, 395
SfaNI GCATC 2 cut(s) 187, 475
SfcI CTRYAG 1 cut(s) 201
Sfr274I CTCGAG 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 3 cut(s) 23, 154, 190
SspMI CTAG 2 cut(s) 141, 432
TaiI ACGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 184
TasI AATT 3 cut(s) 23, 154, 190
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 303, 323, 399
Tru9I TTAA 3 cut(s) 303, 323, 399
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 36, 385, 470
TspRI CASTG 1 cut(s) 249
VspI ATTAAT 1 cut(s) 399
XhoI CTCGAG 1 cut(s) 183
XspI CTAG 2 cut(s) 141, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.