Rroxscaffold_4G00306320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000178
Physical Location & Seq
Reverse (-)
27126074 .. 27126665
592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00306320.1

Sequence Viewer

Length: 354 bp
ATGTCCGATGATGAGATATATGATAAAGTTTTTTCCACAATTGTTGGTCCACCTCGATTCGGCTACATATGTGGCTTAGGAGTAGGTCCTAAGCCTAAAAATTCGAAAGTCAATAATCATTCACAACTTCAGAAGGCTACAAGGAGGGCAGATGAGGTAGAAAGACGATCTACCCAACTTGCAGAGGAGTTAGAGGCAATGAAGGCTAGTGCAGCTCAACAAAATGAAGAATTAGAGGCAGTGAAAGCTAGTACAGCTCAACAAAGTGAAGAGTTAGAGGCAGTTAAAGCAAAGCAAAACGAGACGGACGCACTTTTAAAAAAATTGATTTGTGAAGAGTGGTCCAAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.01

Weight (kDa)

5.29

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 59
AluBI AGCT 3 cut(s) 215, 248, 257
AluI AGCT 3 cut(s) 215, 248, 257
Alw26I GTCTC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 100
AspS9I GGNCC 3 cut(s) 47, 86, 342
AsuII TTCGAA 1 cut(s) 104
AvaII GGWCC 3 cut(s) 47, 86, 342
BbvI GCAGC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 2 cut(s) 207, 249
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme18I GGWCC 3 cut(s) 47, 86, 342
BmgT120I GGNCC 3 cut(s) 47, 86, 342
Bpu10I CCTNAGC 2 cut(s) 76, 90
Bpu14I TTCGAA 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 296
BsmBI CGTCTC 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 104
Bsp143I GATC 1 cut(s) 167
BspT104I TTCGAA 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 345
Bst6I CTCTTC 2 cut(s) 264, 330
BstBI TTCGAA 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 76, 90
BstKTI GATC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 167
BstMWI GCNNNNNNNGC 5 cut(s) 203, 212, 245, 254, 287
BstV1I GCAGC 1 cut(s) 224
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
Cfr13I GGNCC 3 cut(s) 47, 86, 342
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 252
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviJI RGCY 8 cut(s) 63, 75, 94, 137, 206, 215, 248, 257
CviKI_1 RGCY 8 cut(s) 63, 75, 94, 137, 206, 215, 248, 257
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 2 cut(s) 76, 90
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
DraI TTTAAA 1 cut(s) 318
Eam1104I CTCTTC 2 cut(s) 264, 330
EarI CTCTTC 2 cut(s) 264, 330
Eco130I CCWWGG 1 cut(s) 345
Eco47I GGWCC 3 cut(s) 47, 86, 342
Eco57I CTGAAG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 296
FaiI YATR 4 cut(s) 19, 21, 68, 70
FauNDI CATATG 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 207, 249
GluI GCNGC 1 cut(s) 213
HgaI GACGC 1 cut(s) 317
HinfI GANTC 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 3 cut(s) 7, 132, 353
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 127, 196
HpyCH4V TGCA 2 cut(s) 182, 212
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 212, 245, 254, 287
HpyF3I CTNAG 2 cut(s) 76, 90
Kzo9I GATC 1 cut(s) 167
Lsp1109I GCAGC 1 cut(s) 224
MaeI CTAG 2 cut(s) 207, 249
MalI GATC 1 cut(s) 169
MboI GATC 1 cut(s) 167
MboII GAAGA 3 cut(s) 239, 281, 347
MfeI CAATTG 1 cut(s) 39
MluCI AATT 4 cut(s) 39, 100, 230, 323
MnlI CCTC 7 cut(s) 63, 138, 148, 178, 187, 229, 271
MseI TTAA 2 cut(s) 285, 317
MunI CAATTG 1 cut(s) 39
MwoI GCNNNNNNNGC 5 cut(s) 203, 212, 245, 254, 287
NdeI CATATG 1 cut(s) 68
NdeII GATC 1 cut(s) 167
NspV TTCGAA 1 cut(s) 104
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 86
PspPI GGNCC 3 cut(s) 47, 86, 342
PspPPI RGGWCCY 1 cut(s) 86
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 285, 317
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 167
Sau96I GGNCC 3 cut(s) 47, 86, 342
SetI ASST 7 cut(s) 55, 88, 159, 217, 250, 259, 351
SfuI TTCGAA 1 cut(s) 104
SgeI CNNG 6 cut(s) 66, 153, 191, 219, 261, 313
SinI GGWCC 3 cut(s) 47, 86, 342
Sse9I AATT 4 cut(s) 39, 100, 230, 323
SspMI CTAG 2 cut(s) 207, 249
StyI CCWWGG 1 cut(s) 345
TaqI TCGA 2 cut(s) 55, 104
TasI AATT 4 cut(s) 39, 100, 230, 323
TatI WGTACW 1 cut(s) 251
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 2 cut(s) 285, 317
Tru9I TTAA 2 cut(s) 285, 317
TscAI CASTG 1 cut(s) 246
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 215, 240
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 3 cut(s) 47, 86, 342
XapI RAATTY 1 cut(s) 100
XspI CTAG 2 cut(s) 207, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.