RchiOBHm_Chr5g0051011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000178
Physical Location & Seq
Forward (+)
51917992 .. 51918357
366 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32853

Sequence Viewer

Length: 228 bp
ATGCAGTTAAGTAGATCAGACCCAAAGTATGATCAAGGAGTTACAGAGTTTCTTGATTATGCATATAGCCATGATAAGTGGGTAGAGGATGACATGATAATATGTCCATGCAAAGACAATATTGCAACAGATTCAAGTGCACACCATGATGAAGATGGTACTGATGAAGATGGTGATGAAGATGTTGCTGATGAGTATGATGCAAACTCTAATGAGGACTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.6

Weight (kDa)

4.05

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 2 - 43 1.4e-06 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 160
AgsI TTSAA 1 cut(s) 135
Alw21I GWGCWC 1 cut(s) 142
Alw44I GTGCAC 1 cut(s) 138
ApaLI GTGCAC 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 142
BccI CCATC 2 cut(s) 149, 164
BclI TGATCA 1 cut(s) 31
BmsI GCATC 1 cut(s) 190
BseGI GGATG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 2 cut(s) 14, 31
BssMI GATC 2 cut(s) 14, 31
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 2 cut(s) 17, 34
BstMBI GATC 2 cut(s) 14, 31
BstSLI GKGCMC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 94
Csp6I GTAC 1 cut(s) 159
CviAII CATG 4 cut(s) 71, 94, 108, 146
CviJI RGCY 1 cut(s) 69
CviKI_1 RGCY 1 cut(s) 69
CviQI GTAC 1 cut(s) 159
DpnI GATC 2 cut(s) 16, 33
DpnII GATC 2 cut(s) 14, 31
EcoT22I ATGCAT 1 cut(s) 64
FaeI CATG 4 cut(s) 74, 97, 111, 149
FatI CATG 4 cut(s) 70, 93, 107, 145
FbaI TGATCA 1 cut(s) 31
FokI GGATG 1 cut(s) 101
Hin1II CATG 4 cut(s) 74, 97, 111, 149
HinfI GANTC 1 cut(s) 131
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 140
HpyCH4V TGCA 6 cut(s) 4, 62, 111, 125, 140, 203
Hsp92II CATG 4 cut(s) 74, 97, 111, 149
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 2 cut(s) 14, 31
LweI GCATC 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 16, 33
MboI GATC 2 cut(s) 14, 31
MboII GAAGA 3 cut(s) 164, 179, 191
MhlI GDGCHC 1 cut(s) 142
MnlI CCTC 2 cut(s) 79, 208
Mph1103I ATGCAT 1 cut(s) 64
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 147
NdeII GATC 2 cut(s) 14, 31
NlaIII CATG 4 cut(s) 74, 97, 111, 149
NsiI ATGCAT 1 cut(s) 64
PfeI GAWTC 1 cut(s) 131
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 2 cut(s) 14, 31
SduI GDGCHC 1 cut(s) 142
SfaNI GCATC 1 cut(s) 190
SgeI CNNG 7 cut(s) 47, 65, 83, 106, 120, 147, 158
SmiMI CAYNNNNRTG 1 cut(s) 147
SspI AATATT 1 cut(s) 121
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TspDTI ATGAA 3 cut(s) 165, 180, 192
VneI GTGCAC 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.