RLG00000030708

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000178
Physical Location & Seq
Forward (+)
66209418 .. 66213755
4338 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030708

Sequence Viewer

Length: 954 bp
ATGCATTTCAAGCGGTGCCTGGCGGTCTCCCAAAATTATAAGCGCGCTATTCCCAAATTTGGGGGTTTGAATAGAGAGCCAAGCTCACACCAAACTGGCAAAAGCAGTTGGGAGAGACACTTGCAAAATATGCATTGTGAGAACAAAAAACATACTATGAGAGCTGTAGGAACAAATTGTCAATTCTACATTACTGGCATGGGCTGCTTTAAGTGGTCTGAGCTCTCAAGAGAACATGTTGCTTTGCTAATTCGTCATGCCCATGTAACAATGAATCATGTGGATGAGGCAATTGAGAAACATATGATGAGATATTTTACCACTTGGCGTTATAATTTGTGTAAGAAATTTCTGAAATATGACTCAATAGAGGAAGTTGTAGAAAATCAACCTGAAGATGTAGAAGAGGAAGATTGGAACTATTTGATCGTAAATCTGTGGCAAGATGGAAAATGGCTGGAAACAAGTGAAAAAAATAGGAAAAACAGAGATAAGTTGGAGATAACACATTGTGCAGGGACAAAGGCATTTAGTCGCCTTAGAACTGAAAATCGAAATCCTGATAATGGAGAGCAAATTGGTCGTATTGACCTTTTCAAGCTCACACGATATAGCGAAAAGAAATCTGCATGGGTTGGTGATACTGCAAAAAATGCTCTTGAAGAGATGAAGAATCTACAAAATGAGCCACAAATGAATGAAGAAATTGGTGAAATAATGTCTGAAGATGAGATCGATGATAAAGTTCTTTCAAAAATTGTTGCAAGTAATGCTCAATTGAGGGAGGCAAATCAAAGGGCAAATCAAGCAGAAAGACTAGCAATGCAGCTTGCAGAGGAGTTGATGGCTGGGAAGTCTACTGCGGCTGAGCAAAATGAGGAGTTAAAGACAGTCAAAGTTGGTGCAGCTCAGCAAAATGAAGAGTTAGAGGTAGTGAAGGCTAGAGTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

36.88

Weight (kDa)

6.44

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 137 - 239 7.1e-12 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 39, 333
AccB1I GGYRCC 1 cut(s) 15
AccI GTMKAC 1 cut(s) 857
AccII CGCG 1 cut(s) 45
AciI CCGC 3 cut(s) 13, 23, 863
AcsI RAATTY 2 cut(s) 56, 347
AcuI CTGAAG 2 cut(s) 414, 744
AdeI CACNNNGTG 1 cut(s) 512
AfiI CCNNNNNNNGG 3 cut(s) 59, 60, 566
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 5 cut(s) 10, 70, 598, 662, 753
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 6 cut(s) 84, 164, 223, 601, 829, 908
AluI AGCT 6 cut(s) 84, 164, 223, 601, 829, 908
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 2 cut(s) 31, 109
ApeKI GCWGC 3 cut(s) 204, 826, 905
ApoI RAATTY 2 cut(s) 56, 347
AspLEI GCGC 2 cut(s) 45, 47
AsuHPI GGTGA 2 cut(s) 650, 722
BanI GGYRCC 1 cut(s) 15
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 191, 838, 917
BccI CCATC 2 cut(s) 440, 838
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 31, 109
BfaI CTAG 2 cut(s) 818, 942
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 4 cut(s) 205, 827, 864, 906
BlpI GCTNAGC 2 cut(s) 867, 909
BlsI GCNGC 4 cut(s) 206, 828, 865, 907
Bme1390I CCNGG 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 20
BplI GAGNNNNNCTC 2 cut(s) 68, 100
Bpu1102I GCTNAGC 2 cut(s) 867, 909
BpuEI CTTGAG 1 cut(s) 211
Bsa29I ATCGAT 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 60, 566
Bse1I ACTGG 2 cut(s) 100, 199
Bse3DI GCAATG 1 cut(s) 828
BseBI CCWGG 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 735
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 3 cut(s) 59, 60, 566
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 3 cut(s) 210, 858, 923
BseNI ACTGG 2 cut(s) 100, 199
BsePI GCGCGC 1 cut(s) 43
BseRI GAGGAG 2 cut(s) 851, 893
BseXI GCAGC 3 cut(s) 191, 838, 917
BseYI CCCAGC 1 cut(s) 848
BsgI GTGCAG 2 cut(s) 534, 924
Bsh1236I CGCG 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 15
BshVI ATCGAT 1 cut(s) 735
BsiHKAI GWGCWC 1 cut(s) 225
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 3 cut(s) 59, 60, 566
BsmAI GTCTC 2 cut(s) 31, 109
BsmFI GGGAC 1 cut(s) 532
Bso31I GGTCTC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 2 cut(s) 426, 732
Bsp1720I GCTNAGC 2 cut(s) 867, 909
BspACI CCGC 3 cut(s) 13, 23, 863
BspCNI CTCAG 3 cut(s) 211, 859, 922
BspDI ATCGAT 1 cut(s) 735
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 15
BspTNI GGTCTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 828
BsrI ACTGG 2 cut(s) 100, 199
BssHII GCGCGC 1 cut(s) 43
BssMI GATC 2 cut(s) 426, 732
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 892
Bst6I CTCTTC 3 cut(s) 399, 657, 915
BstAPI GCANNNNNTGC 4 cut(s) 130, 204, 653, 770
BstC8I GCNNGC 2 cut(s) 45, 831
BstDEI CTNAG 4 cut(s) 219, 539, 867, 909
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 2 cut(s) 45, 47
BstKTI GATC 2 cut(s) 429, 735
BstMAI GTCTC 2 cut(s) 31, 109
BstMBI GATC 2 cut(s) 426, 732
BstMWI GCNNNNNNNGC 6 cut(s) 10, 130, 204, 653, 770, 806
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 165
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 191, 838, 917
Bsu15I ATCGAT 1 cut(s) 735
BsuTUI ATCGAT 1 cut(s) 735
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 45, 831
CfoI GCGC 2 cut(s) 45, 47
ClaI ATCGAT 1 cut(s) 735
CviAII CATG 6 cut(s) 199, 236, 257, 263, 278, 630
DdeI CTNAG 4 cut(s) 219, 539, 867, 909
DpnI GATC 2 cut(s) 428, 734
DpnII GATC 2 cut(s) 426, 732
DraIII CACNNNGTG 1 cut(s) 512
Eam1104I CTCTTC 3 cut(s) 399, 657, 915
EarI CTCTTC 3 cut(s) 399, 657, 915
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 2 cut(s) 414, 744
EcoICRI GAGCTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 18
EcoT22I ATGCAT 2 cut(s) 6, 135
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 6 cut(s) 202, 239, 260, 266, 281, 633
FaqI GGGAC 1 cut(s) 532
FatI CATG 6 cut(s) 198, 235, 256, 262, 277, 629
FauNDI CATATG 1 cut(s) 303
FblI GTMKAC 1 cut(s) 857
Fnu4HI GCNGC 4 cut(s) 205, 827, 864, 906
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 4 cut(s) 205, 827, 864, 906
FspBI CTAG 2 cut(s) 818, 942
GlaI GCGC 2 cut(s) 44, 46
GluI GCNGC 4 cut(s) 205, 827, 864, 906
GsaI CCCAGC 1 cut(s) 852
HhaI GCGC 2 cut(s) 45, 47
Hin1II CATG 6 cut(s) 202, 239, 260, 266, 281, 633
Hin6I GCGC 2 cut(s) 43, 45
HinP1I GCGC 2 cut(s) 43, 45
HinfI GANTC 4 cut(s) 274, 362, 673, 945
HphI GGTGA 2 cut(s) 650, 722
Hpy166II GTNNAC 1 cut(s) 858
Hpy188I TCNGA 3 cut(s) 220, 354, 724
Hpy188III TCNNGA 3 cut(s) 228, 560, 659
Hpy8I GTNNAC 1 cut(s) 858
HpyAV CCTTC 1 cut(s) 931
HpyCH4III ACNGT 1 cut(s) 892
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 130, 204, 653, 770, 806
HpyF3I CTNAG 4 cut(s) 219, 539, 867, 909
Hsp92II CATG 6 cut(s) 202, 239, 260, 266, 281, 633
HspAI GCGC 2 cut(s) 43, 45
Kzo9I GATC 2 cut(s) 426, 732
LpnPI CCDG 9 cut(s) 5, 32, 81, 180, 405, 443, 501, 573, 834
Lsp1109I GCAGC 3 cut(s) 191, 838, 917
MaeI CTAG 2 cut(s) 818, 942
MaeIII GTNAC 2 cut(s) 265, 946
MalI GATC 2 cut(s) 428, 734
MboI GATC 2 cut(s) 426, 732
MboII GAAGA 8 cut(s) 407, 416, 422, 674, 682, 713, 737, 932
MfeI CAATTG 2 cut(s) 291, 776
MhlI GDGCHC 1 cut(s) 225
MlyI GAGTC 2 cut(s) 356, 954
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 8 cut(s) 280, 364, 400, 774, 778, 829, 871, 922
Mph1103I ATGCAT 2 cut(s) 6, 135
MseI TTAA 3 cut(s) 210, 884, 952
MslI CAYNNNNRTG 2 cut(s) 261, 282
MspR9I CCNGG 1 cut(s) 20
MunI CAATTG 2 cut(s) 291, 776
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 6 cut(s) 10, 130, 204, 653, 770, 806
NdeI CATATG 1 cut(s) 303
NdeII GATC 2 cut(s) 426, 732
NlaIII CATG 6 cut(s) 202, 239, 260, 266, 281, 633
NlaIV GGNNCC 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 946
NsiI ATGCAT 2 cut(s) 6, 135
NspI RCATGY 1 cut(s) 239
PauI GCGCGC 1 cut(s) 43
PciI ACATGT 1 cut(s) 235
PfeI GAWTC 2 cut(s) 274, 673
PkrI GCNGC 4 cut(s) 206, 828, 865, 907
PleI GAGTC 2 cut(s) 356, 953
PpsI GAGTC 2 cut(s) 356, 953
PscI ACATGT 1 cut(s) 235
PsiI TTATAA 2 cut(s) 39, 333
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 18
PspFI CCCAGC 1 cut(s) 848
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 17
PteI GCGCGC 1 cut(s) 43
RseI CAYNNNNRTG 2 cut(s) 261, 282
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 3 cut(s) 210, 884, 952
SatI GCNGC 4 cut(s) 205, 827, 864, 906
Sau3AI GATC 2 cut(s) 426, 732
SchI GAGTC 2 cut(s) 356, 954
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 225
SetI ASST 9 cut(s) 86, 166, 225, 394, 594, 603, 831, 910, 933
SfcI CTRYAG 1 cut(s) 165
SmiMI CAYNNNNRTG 2 cut(s) 261, 282
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
SsiI CCGC 3 cut(s) 13, 23, 863
SspMI CTAG 2 cut(s) 818, 942
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 892
TaqI TCGA 2 cut(s) 553, 735
TauI GCSGC 1 cut(s) 866
TfiI GAWTC 2 cut(s) 274, 673
Tru1I TTAA 3 cut(s) 210, 884, 952
Tru9I TTAA 3 cut(s) 210, 884, 952
TseFI GTSAC 1 cut(s) 946
TseI GCWGC 3 cut(s) 204, 826, 905
Tsp45I GTSAC 1 cut(s) 946
TspDTI ATGAA 5 cut(s) 287, 683, 710, 714, 933
XapI RAATTY 2 cut(s) 56, 347
XceI RCATGY 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 857
XspI CTAG 2 cut(s) 818, 942
Zsp2I ATGCAT 2 cut(s) 6, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.