Rmu_sc0003778.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003778.1
OG0000178
Physical Location & Seq
Reverse (-)
17394 .. 17792
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003778.1_g000005.1.cds

Sequence Viewer

Length: 399 bp
atgtctaaagatgagatctatgatgaagtgttttctacaattgttggtccaccacgatcaagctatatatgtggcttaggagcaggcccaaagcctaaaaggtctaaattttctgcaaatgatgctcaagtgagggaggggaatcaaggggcagatgaagcggaaagaagagcaatgcagcttgcagatgaattgatggttgtaaagtctactgcagcacagaaaaataaggagttagagacggtcgaagctggtgcaactcaacaaaatgacgagttagaggcagtgaaggctagagccgctcaacaaaatgaagagttggaggcactaaaagcaagacaaaatcagactgacacacttttactcaaattgatggctcagttgtcctcccaaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.45

Weight (kDa)

5.12

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 209
AciI CCGC 2 cut(s) 161, 300
AcsI RAATTY 1 cut(s) 107
AluBI AGCT 3 cut(s) 63, 181, 251
AluI AGCT 3 cut(s) 63, 181, 251
Alw26I GTCTC 1 cut(s) 233
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 178, 215
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 47, 86
AvaII GGWCC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 190, 227
BccI CCATC 2 cut(s) 190, 367
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 213
BglII AGATCT 1 cut(s) 15
BisI GCNGC 3 cut(s) 179, 216, 300
BlsI GCNGC 3 cut(s) 180, 217, 301
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 2 cut(s) 47, 86
BmsI GCATC 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 190, 227
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 233
BsmBI CGTCTC 1 cut(s) 233
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 2 cut(s) 15, 56
BspACI CCGC 2 cut(s) 161, 300
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 391
BspMAI CTGCAG 1 cut(s) 217
BspQI GCTCTTC 1 cut(s) 163
BsrBI CCGCTC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 180
BssMI GATC 2 cut(s) 15, 56
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 163, 309
BstAPI GCANNNNNTGC 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 85, 183
BstDEI CTNAG 2 cut(s) 76, 378
BstKTI GATC 2 cut(s) 18, 59
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 15, 56
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 5 cut(s) 122, 158, 290, 299, 332
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 190, 227
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 2 cut(s) 85, 183
Cfr13I GGNCC 2 cut(s) 47, 86
CviJI RGCY 9 cut(s) 63, 75, 87, 94, 181, 251, 293, 299, 377
CviKI_1 RGCY 9 cut(s) 63, 75, 87, 94, 181, 251, 293, 299, 377
DdeI CTNAG 2 cut(s) 76, 378
DpnI GATC 2 cut(s) 17, 58
DpnII GATC 2 cut(s) 15, 56
Eam1104I CTCTTC 2 cut(s) 163, 309
EarI CTCTTC 2 cut(s) 163, 309
Eco47I GGWCC 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 233
FaiI YATR 4 cut(s) 21, 66, 68, 70
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 179, 216, 300
Fsp4HI GCNGC 3 cut(s) 179, 216, 300
FspBI CTAG 1 cut(s) 294
GluI GCNGC 3 cut(s) 179, 216, 300
HaeIII GGCC 1 cut(s) 87
HinfI GANTC 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 50, 210
Hpy188I TCNGA 1 cut(s) 348
Hpy8I GTNNAC 2 cut(s) 50, 210
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 5 cut(s) 116, 178, 185, 215, 257
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 158, 290, 299, 332
HpyF3I CTNAG 2 cut(s) 76, 378
Kzo9I GATC 2 cut(s) 15, 56
LguI GCTCTTC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 2 cut(s) 69, 237
Lsp1109I GCAGC 2 cut(s) 190, 227
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 294
MalI GATC 2 cut(s) 17, 58
MbiI CCGCTC 1 cut(s) 302
MboI GATC 2 cut(s) 15, 56
MboII GAAGA 2 cut(s) 180, 326
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 15
MluCI AATT 4 cut(s) 39, 107, 191, 368
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 5 cut(s) 126, 130, 274, 316, 397
MunI CAATTG 1 cut(s) 39
MwoI GCNNNNNNNGC 5 cut(s) 122, 158, 290, 299, 332
NdeII GATC 2 cut(s) 15, 56
PciSI GCTCTTC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 3 cut(s) 180, 217, 301
PspPI GGNCC 2 cut(s) 47, 86
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 163
SatI GCNGC 3 cut(s) 179, 216, 300
Sau3AI GATC 2 cut(s) 15, 56
Sau96I GGNCC 2 cut(s) 47, 86
SetI ASST 4 cut(s) 65, 104, 183, 253
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 4 cut(s) 39, 107, 191, 368
SsiI CCGC 2 cut(s) 161, 300
SspMI CTAG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 246
TasI AATT 4 cut(s) 39, 107, 191, 368
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 1 cut(s) 142
TscAI CASTG 1 cut(s) 291
TseI GCWGC 2 cut(s) 178, 215
TspDTI ATGAA 4 cut(s) 39, 171, 204, 327
TspRI CASTG 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.