MD09G1027200.v1.1

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000178
Physical Location & Seq
Reverse (-)
1686315 .. 1690780
4466 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1027200.v1.1.491

Sequence Viewer

Length: 1629 bp
ATGGAGAGTGATTGGTCAGATGGTGATCAAAATGTAAGCACCGTGGTGCAGAACTTGCTTAGCAGGTATGGTGAAGGGGATCGCCAGACGGGAAACTCATCCAACCAGAATGATAGTGCGCAAAATATGCCATTGACTGTCTTGGGTTCTTGGAGTAGATTCCAGAATGAGCAAGTATCGCCATTGCAGGATCCTCCCTGTAACAAGAAAGAATTGAGTGCTGCCCTGGCGGTCATTAAGAAGGTTATGAAAATGGATGCAGCTGTACCTTTCAACACTCCCGTGGATCCAGTTGCTATGAGATTACCTGATTACTTTGATGTCGTAGATACTCCAATGGATTTTGGAACGATATGCAGCCATCTTCAAAATGGTACCAAGTATATGAACGCGGAGGATGTATTCAAGGATGTCCAATACATTTGGAAGAACTGTTGCAACTATTACAATGAGGGTAACTTTGTTTTGAACCTTAAGAAACGCGTGGAGGAGAAATTCATGAAATATTGGACAGCTGCTGGTTTGGGCAGTAAAGAACCCGGGGCAAGTAACCTTTTACTAAGCTCTAATGTGGGGAAAAGGAAGACGCGAGGACCTACCCGTAACCTTAGACTAGCTCAACTTCCTATTGGGGAAAGATTTGAAGTCAGCTGGAAGAACCGGAGACCCGTAGGTGAAACCACCACTTTCTTCAAATCAGAGTGTACAGCCCTGGTTAGGCAAACCCGGGAGATACCCCTACAGGTTAAGTCATGGAAGGAAATCCCATCTGATATTAAACAGAAGGCATTTGAACATATGTTGAAGCGTTTCAAAGTCGAAGATCACATGAAATGGGTTTTGGATCAGATTCATAGATCCTACAACAGTTATCGGCATCACCTGAAGACGACGTGGTTTGAAACATGTGAGACAACTGAGGATGCACGTGAAAAAGTACCACCAAATGTTACAGAGGAGGATTGGCAGTATCTTGTAAACTTGTGGACCTCACCTGAATGGCAGAAAATCAGTAAGCAATACAAGGAGAATCGTTCCAAGAATACCATAATTCACACGTGTGGGTCCAAGAGTTTCTCTCAAGTCCTCGAGGAAGAGAAAAAGAAGACTGGAAATGAGCCTGGCCGTACACTTTTCTGGGAACGCACCCATGTTCGGCATGATGGACAGGCTCCAAATCCAGCTACACAGGAGGCATTGTCAAAGCTCAAGAAATTGTATGCTCAAGTGGCTGCGGAGAACTCACAGATGACAGAAGACGAGATTTTTGTAAAGGTTTTTGGACCTGAGCGTCCCTCGAGATTACGTGGTTACGGTGGTGTAACCCCAAAAGAGTTATGGGGAACACCGTCATCGTCATCGTCATATACTGTTAGTGAACTCAAAAGGCAACTTGAAGAAACAAAGCAGCGACAAGAGGAGTATGAACAAAAGAGTGCTGCTGAGATACAGGGCTTGAAAGAGCAATTTGGTCGTCTTGAGGGTTTGCTATCAGATCAAATGAATAGGTTTGAAGGTTTACTAGTACAGTTGACGAGTCATATGCAGCCCCCTTCCCCGATTGAGAGGCCTACTGGACATCTACTCACCCGAAATGGCCATCCACGGAGTTTCCGATCCAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

543

Amino Acids

62.47

Weight (kDa)

8.95

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 77 - 155 5.9e-14 Bromodomain
Transposase_24 PF03004 319 - 441 3.7e-26 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G40087 AT3G30200
fragaria_vesca FvH4_1g23271 FvH4_3g22812 FvH4_3g22813 FvH4_3g31042 FvH4_3g31043 FvH4_7g03653
malus_domestica MD05G1321200.v1.1 MD09G1027200.v1.1 MD15G1434900.v1.1 MD15G1435000.v1.1 MD15G1435100.v1.1
prunus_persica Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.1G578800_v2.0.a1 Prupe.2G062700_v2.0.a1 Prupe.5G033400_v2.0.a1 Prupe.7G022900_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1 Prupe.7G105300_v2.0.a1
pyrus_communis pycom03g07600 pycom03g11360 pycom05g02870 pycom111g02130 pycom15g38370 pycom15g38380
rosa_chinensis RchiOBHm_Chr1g0346371 RchiOBHm_Chr4g0402051 RchiOBHm_Chr4g0414991 RchiOBHm_Chr5g0051011 RchiOBHm_Chr5g0051181 RchiOBHm_Chr6g0273071 RchiOBHm_Chr7g0218301 RchiOBHm_Chr7g0241081
rosa_laevigata RLG00000007709 RLG00000008953 RLG00000012400 RLG00000012401 RLG00000013805 RLG00000014199 RLG00000014726 RLG00000017792 RLG00000017793 RLG00000018860 RLG00000020749 RLG00000030708 RLG00000033507
rosa_multiflora Rmu_co8373761.1_g000001 Rmu_sc0000028.1_g000023 Rmu_sc0000235.1_g000040 Rmu_sc0000293.1_g000017 Rmu_sc0000293.1_g000019 Rmu_sc0000651.1_g000012 Rmu_sc0000870.1_g000051 Rmu_sc0001167.1_g000031 Rmu_sc0001373.1_g000039 Rmu_sc0001861.1_g000055 Rmu_sc0001891.1_g000038 Rmu_sc0001909.1_g000015 Rmu_sc0002500.1_g000002 Rmu_sc0002868.1_g000036 Rmu_sc0002868.1_g000038 Rmu_sc0002868.1_g000039 Rmu_sc0003379.1_g000001 Rmu_sc0003778.1_g000005 Rmu_sc0003778.1_g000006 Rmu_sc0010475.1_g000011 Rmu_sc0015271.1_g000002 Rmu_sc0015271.1_g000003 Rmu_sc0017962.1_g000001 Rmu_sc0017962.1_g000003 Rmu_sc0022129.1_g000004 Rmu_sc0025694.1_g000003 Rmu_sc0025694.1_g000004
rosa_roxburghii Rroxscaffold_1G00031640 Rroxscaffold_1G00047620 Rroxscaffold_1G00047630 Rroxscaffold_1G00050560 Rroxscaffold_1G00050570 Rroxscaffold_1G00054800 Rroxscaffold_1G00055890 Rroxscaffold_2G00108230 Rroxscaffold_3G00240860 Rroxscaffold_4G00299670 Rroxscaffold_4G00299680 Rroxscaffold_4G00299690 Rroxscaffold_4G00306320 Rroxscaffold_4G00306340 Rroxscaffold_5G00341060 Rroxscaffold_5G00342000 Rroxscaffold_5G00355660 Rroxscaffold_5G00357170 Rroxscaffold_6G00399490 Rroxscaffold_6G00408400 Rroxscaffold_7G00189260 Rroxscaffold_7G00199620 Rroxscaffold_7G00215470
rosa_rugosa Rorug02G0117600 Rorug02G0117700 Rorug04G0116400 Rorug06G0103200
rosa_samantha Rh1AG062800 Rh1AG073700 Rh1CG091700 Rh1DG077600 Rh1DG077700 Rh1DG077800 Rh1DG117400 Rh1DG146300 Rh2BG193300 Rh2BG193400 Rh2BG265300 Rh2BG413400 Rh3CG365500 Rh4AG315400 Rh4BG323100 Rh4BG323200 Rh4CG071400 Rh4CG142500 Rh4CG203300 Rh4CG338300 Rh4DG079300 Rh4DG079400 Rh4DG217000 Rh4DG217100 Rh4DG217200 Rh4DG217300 Rh5AG128300 Rh5AG239900 Rh5AG465900 Rh5BG348600 Rh5BG387900 Rh5BG388000 Rh5CG181800 Rh5CG181900 Rh5CG271000 Rh5CG271100 Rh5DG127100 Rh5DG138400 Rh5DG168200 Rh5DG168300 Rh5DG361500 Rh5DG460400 Rh6AG045400 Rh6AG058600 Rh6BG275000 Rh6CG089700 Rh6DG182300 Rh6DG182400 Rh6DG207300 Rh6DG207400 Rh7BG374000 Rh7BG390600 Rh7BG390700 Rh7BG390800
rosa_wichuraiana Rw0G018690 Rw1G007320 Rw4G008510 Rw5G011510 Rw5G021830 Rw6G024150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1290
AbsI CCTCGAGG 1 cut(s) 1088
Acc16I TGCGCA 1 cut(s) 120
Acc36I ACCTGC 1 cut(s) 54
Acc65I GGTACC 1 cut(s) 374
AccB1I GGYRCC 1 cut(s) 374
AccII CGCG 3 cut(s) 392, 483, 589
AciI CCGC 3 cut(s) 230, 392, 1235
AclWI GGATC 8 cut(s) 87, 185, 198, 281, 294, 852, 852, 1611
AcoI YGGCCR 2 cut(s) 1123, 1597
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 905
AcvI CACGTG 2 cut(s) 929, 1059
AfaI GTAC 6 cut(s) 267, 376, 706, 939, 1129, 1527
AfiI CCNNNNNNNGG 2 cut(s) 717, 1155
AflII CTTAAG 1 cut(s) 473
AflIII ACRYGT 4 cut(s) 481, 905, 1056, 1058
AhlI ACTAGT 1 cut(s) 1522
AjiI CACGTC 1 cut(s) 894
AjnI CCWGG 3 cut(s) 225, 711, 1120
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AleI CACNNNNGTG 3 cut(s) 44, 281, 1059
AluBI AGCT 7 cut(s) 263, 515, 564, 617, 651, 1184, 1207
AluI AGCT 7 cut(s) 263, 515, 564, 617, 651, 1184, 1207
Alw26I GTCTC 2 cut(s) 658, 905
AlwI GGATC 8 cut(s) 87, 185, 198, 281, 294, 852, 852, 1611
AlwNI CAGNNNCTG 1 cut(s) 518
Ama87I CYCGRG 4 cut(s) 539, 726, 1088, 1297
AoxI GGCC 3 cut(s) 1123, 1568, 1597
ApeKI GCWGC 8 cut(s) 221, 260, 357, 515, 1232, 1408, 1439, 1546
ApoI RAATTY 1 cut(s) 494
ArsI GACNNNNNNTTYG 2 cut(s) 1250, 1282
Asp700I GAANNNNTTC 1 cut(s) 809
Asp718I GGTACC 1 cut(s) 374
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 4 cut(s) 593, 987, 1065, 1283
AsuC2I CCSGG 4 cut(s) 540, 541, 727, 728
AsuHPI GGTGA 6 cut(s) 35, 83, 686, 872, 984, 1579
AvaI CYCGRG 4 cut(s) 539, 726, 1088, 1297
AvaII GGWCC 4 cut(s) 593, 987, 1065, 1283
BalI TGGCCA 1 cut(s) 1599
BamHI GGATCC 2 cut(s) 190, 286
BanI GGYRCC 1 cut(s) 374
BbrPI CACGTG 2 cut(s) 929, 1059
BbsI GAAGAC 4 cut(s) 590, 893, 1112, 1263
BbvI GCAGC 8 cut(s) 208, 272, 369, 502, 1219, 1420, 1426, 1558
BccI CCATC 5 cut(s) 14, 369, 775, 1157, 1608
BceAI ACGGC 1 cut(s) 1110
BcgI CGANNNNNNTGC 4 cut(s) 1454, 1488, 1525, 1559
BciT130I CCWGG 3 cut(s) 227, 713, 1122
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 4 cut(s) 540, 541, 727, 728
BcoDI GTCTC 2 cut(s) 658, 905
BcuI ACTAGT 1 cut(s) 1522
BfaI CTAG 2 cut(s) 614, 1523
BfmI CTRYAG 1 cut(s) 740
BfrI CTTAAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 8 cut(s) 222, 261, 358, 516, 1233, 1409, 1440, 1547
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 8 cut(s) 223, 262, 359, 517, 1234, 1410, 1441, 1548
Bme1390I CCNGG 7 cut(s) 227, 540, 541, 713, 727, 728, 1122
Bme18I GGWCC 4 cut(s) 593, 987, 1065, 1283
BmeT110I CYCGRG 4 cut(s) 539, 726, 1088, 1297
BmgBI CACGTC 1 cut(s) 894
BmgT120I GGNCC 4 cut(s) 593, 987, 1065, 1283
BmiI GGNNCC 5 cut(s) 192, 288, 376, 1066, 1173
BmrFI CCNGG 7 cut(s) 227, 540, 541, 713, 727, 728, 1122
BmsI GCATC 3 cut(s) 247, 886, 913
BpiI GAAGAC 4 cut(s) 590, 893, 1112, 1263
BplI GAGNNNNNCTC 4 cut(s) 1063, 1095, 1280, 1312
Bpu10I CCTNAGC 1 cut(s) 1287
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 4 cut(s) 1065, 1193, 1209, 1499
BpuMI CCSGG 4 cut(s) 540, 541, 727, 728
BsaAI YACGTR 3 cut(s) 929, 1059, 1307
BsaBI GATNNNNATC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 658
BsaJI CCNNGG 8 cut(s) 42, 225, 282, 539, 540, 711, 726, 1604
BsaWI WCCGGW 1 cut(s) 660
BsaXI ACNNNNNCTCC 2 cut(s) 1184, 1214
Bsc4I CCNNNNNNNGG 2 cut(s) 717, 1155
Bse1I ACTGG 3 cut(s) 290, 1114, 1579
Bse3DI GCAATG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 3 cut(s) 227, 713, 1122
BseDI CCNNGG 8 cut(s) 42, 225, 282, 539, 540, 711, 726, 1604
BseGI GGATG 6 cut(s) 98, 262, 403, 415, 928, 1600
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 717, 1155
BseMI GCAATG 1 cut(s) 182
BseMII CTCAG 3 cut(s) 909, 1278, 1434
BseNI ACTGG 3 cut(s) 290, 1114, 1579
BseRI GAGGAG 3 cut(s) 503, 971, 1433
BseXI GCAGC 8 cut(s) 208, 272, 369, 502, 1219, 1420, 1426, 1558
BsgI GTGCAG 1 cut(s) 68
Bsh1236I CGCG 3 cut(s) 392, 483, 589
BshFI GGCC 3 cut(s) 1125, 1570, 1599
BshNI GGYRCC 1 cut(s) 374
BsiHKCI CYCGRG 4 cut(s) 539, 726, 1088, 1297
BsiSI CCGG 3 cut(s) 540, 661, 727
BslFI GGGAC 1 cut(s) 1278
BslI CCNNNNNNNGG 2 cut(s) 717, 1155
BsmAI GTCTC 2 cut(s) 658, 905
BsmFI GGGAC 1 cut(s) 1278
BsnI GGCC 3 cut(s) 1125, 1570, 1599
Bso31I GGTCTC 1 cut(s) 658
BsoBI CYCGRG 4 cut(s) 539, 726, 1088, 1297
Bsp1407I TGTACA 1 cut(s) 704
Bsp143I GATC 9 cut(s) 25, 79, 190, 286, 823, 844, 857, 1495, 1616
Bsp1720I GCTNAGC 1 cut(s) 59
BspACI CCGC 3 cut(s) 230, 392, 1235
BspANI GGCC 3 cut(s) 1125, 1570, 1599
BspCNI CTCAG 3 cut(s) 910, 1279, 1435
BspFNI CGCG 3 cut(s) 392, 483, 589
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 5 cut(s) 192, 288, 376, 1066, 1173
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 8 cut(s) 87, 185, 198, 281, 294, 852, 852, 1611
BspT107I GGYRCC 1 cut(s) 374
BspTI CTTAAG 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 658
BsrDI GCAATG 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 704
BsrI ACTGG 3 cut(s) 290, 1114, 1579
BssECI CCNNGG 8 cut(s) 42, 225, 282, 539, 540, 711, 726, 1604
BssMI GATC 9 cut(s) 25, 79, 190, 286, 823, 844, 857, 1495, 1616
Bst2UI CCWGG 3 cut(s) 227, 713, 1122
Bst4CI ACNGT 8 cut(s) 43, 139, 434, 869, 1316, 1350, 1372, 1530
Bst6I CTCTTC 1 cut(s) 1089
BstAFI CTTAAG 1 cut(s) 473
BstAPI GCANNNNNTGC 2 cut(s) 55, 127
BstAUI TGTACA 1 cut(s) 704
BstBAI YACGTR 3 cut(s) 929, 1059, 1307
BstDEI CTNAG 6 cut(s) 59, 560, 608, 918, 1287, 1443
BstDSI CCRYGG 3 cut(s) 42, 282, 1604
BstF5I GGATG 6 cut(s) 98, 262, 403, 415, 928, 1600
BstFNI CGCG 3 cut(s) 392, 483, 589
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 9 cut(s) 28, 82, 193, 289, 826, 847, 860, 1498, 1619
BstMAI GTCTC 2 cut(s) 658, 905
BstMBI GATC 9 cut(s) 25, 79, 190, 286, 823, 844, 857, 1495, 1616
BstMWI GCNNNNNNNGC 5 cut(s) 55, 127, 178, 227, 1229
BstNI CCWGG 3 cut(s) 227, 713, 1122
BstNSI RCATGY 1 cut(s) 909
BstSCI CCNGG 7 cut(s) 225, 538, 539, 711, 725, 726, 1120
BstSFI CTRYAG 1 cut(s) 740
BstUI CGCG 3 cut(s) 392, 483, 589
BstV1I GCAGC 8 cut(s) 208, 272, 369, 502, 1219, 1420, 1426, 1558
BstV2I GAAGAC 4 cut(s) 590, 893, 1112, 1263
BstX2I RGATCY 3 cut(s) 190, 286, 857
BstYI RGATCY 3 cut(s) 190, 286, 857
BsuRI GGCC 3 cut(s) 1125, 1570, 1599
BtgI CCRYGG 3 cut(s) 42, 282, 1604
BtrI CACGTC 1 cut(s) 894
BtsCI GGATG 6 cut(s) 98, 262, 403, 415, 928, 1600
BveI ACCTGC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 518
CciI TCATGA 1 cut(s) 498
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 4 cut(s) 593, 987, 1065, 1283
Cfr9I CCCGGG 2 cut(s) 539, 726
CseI GACGC 2 cut(s) 595, 1280
Csp6I GTAC 6 cut(s) 266, 375, 705, 938, 1128, 1526
CviAII CATG 6 cut(s) 499, 753, 829, 906, 1151, 1160
CviQI GTAC 6 cut(s) 266, 375, 705, 938, 1128, 1526
DdeI CTNAG 6 cut(s) 59, 560, 608, 918, 1287, 1443
DpnI GATC 9 cut(s) 27, 81, 192, 288, 825, 846, 859, 1497, 1618
DpnII GATC 9 cut(s) 25, 79, 190, 286, 823, 844, 857, 1495, 1616
DrdI GACNNNNNNGTC 1 cut(s) 1290
DseDI GACNNNNNNGTC 1 cut(s) 1290
EaeI YGGCCR 2 cut(s) 1123, 1597
Eam1104I CTCTTC 1 cut(s) 1089
EarI CTCTTC 1 cut(s) 1089
Eco147I AGGCCT 1 cut(s) 1570
Eco31I GGTCTC 1 cut(s) 658
Eco47I GGWCC 4 cut(s) 593, 987, 1065, 1283
Eco57I CTGAAG 1 cut(s) 905
Eco72I CACGTG 2 cut(s) 929, 1059
Eco88I CYCGRG 4 cut(s) 539, 726, 1088, 1297
EcoO109I RGGNCCY 1 cut(s) 593
EcoRII CCWGG 3 cut(s) 225, 711, 1120
FaeI CATG 6 cut(s) 502, 756, 832, 909, 1154, 1163
FaqI GGGAC 1 cut(s) 1278
FatI CATG 6 cut(s) 498, 752, 828, 905, 1150, 1159
FauNDI CATATG 2 cut(s) 798, 1542
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 8 cut(s) 222, 261, 358, 516, 1233, 1409, 1440, 1547
FokI GGATG 6 cut(s) 85, 269, 410, 422, 935, 1587
Fsp4HI GCNGC 8 cut(s) 222, 261, 358, 516, 1233, 1409, 1440, 1547
FspBI CTAG 2 cut(s) 614, 1523
FspI TGCGCA 1 cut(s) 120
GlaI GCGC 1 cut(s) 120
GluI GCNGC 8 cut(s) 222, 261, 358, 516, 1233, 1409, 1440, 1547
HaeIII GGCC 3 cut(s) 1125, 1570, 1599
HapII CCGG 3 cut(s) 540, 661, 727
HgaI GACGC 2 cut(s) 595, 1280
HhaI GCGC 1 cut(s) 121
Hin1II CATG 6 cut(s) 502, 756, 832, 909, 1154, 1163
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 1533
HindII GTYRAC 1 cut(s) 1533
HinfI GANTC 4 cut(s) 159, 850, 1030, 1537
HpaII CCGG 3 cut(s) 540, 661, 727
HphI GGTGA 6 cut(s) 35, 83, 686, 872, 984, 1579
Hpy166II GTNNAC 7 cut(s) 705, 979, 987, 1130, 1379, 1520, 1533
Hpy188I TCNGA 6 cut(s) 19, 700, 772, 849, 1495, 1616
Hpy188III TCNNGA 6 cut(s) 163, 499, 1210, 1299, 1478, 1620
Hpy8I GTNNAC 7 cut(s) 705, 979, 987, 1130, 1379, 1520, 1533
Hpy99I CGWCG 1 cut(s) 895
HpyAV CCTTC 6 cut(s) 68, 235, 751, 778, 1508, 1563
HpyCH4III ACNGT 8 cut(s) 43, 139, 434, 869, 1316, 1350, 1372, 1530
HpyCH4IV ACGT 4 cut(s) 893, 928, 1058, 1306
HpyCH4V TGCA 7 cut(s) 49, 187, 260, 357, 438, 926, 1546
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 127, 178, 227, 1229
HpyF3I CTNAG 6 cut(s) 59, 560, 608, 918, 1287, 1443
HpySE526I ACGT 4 cut(s) 893, 928, 1058, 1306
Hsp92II CATG 6 cut(s) 502, 756, 832, 909, 1154, 1163
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 378
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 9 cut(s) 25, 79, 190, 286, 823, 844, 857, 1495, 1616
LmnI GCTCC 1 cut(s) 1177
Lsp1109I GCAGC 8 cut(s) 208, 272, 369, 502, 1219, 1420, 1426, 1558
LweI GCATC 3 cut(s) 247, 886, 913
MaeI CTAG 2 cut(s) 614, 1523
MaeII ACGT 4 cut(s) 893, 928, 1058, 1306
MaeIII GTNAC 7 cut(s) 200, 455, 548, 602, 949, 1310, 1321
MalI GATC 9 cut(s) 27, 81, 192, 288, 825, 846, 859, 1497, 1618
MboI GATC 9 cut(s) 25, 79, 190, 286, 823, 844, 857, 1495, 1616
MflI RGATCY 3 cut(s) 190, 286, 857
MlsI TGGCCA 1 cut(s) 1599
MluCI AATT 5 cut(s) 212, 494, 1050, 1214, 1466
MluI ACGCGT 1 cut(s) 481
MluNI TGGCCA 1 cut(s) 1599
MlyI GAGTC 1 cut(s) 1546
MmeI TCCRAC 1 cut(s) 126
Mox20I TGGCCA 1 cut(s) 1599
MroXI GAANNNNTTC 1 cut(s) 809
MscI TGGCCA 1 cut(s) 1599
MseI TTAA 4 cut(s) 237, 474, 747, 777
MslI CAYNNNNRTG 4 cut(s) 44, 281, 997, 1059
Msp20I TGGCCA 1 cut(s) 1599
MspA1I CMGCKG 3 cut(s) 263, 515, 651
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 3 cut(s) 540, 661, 727
MspR9I CCNGG 7 cut(s) 227, 540, 541, 713, 727, 728, 1122
MvaI CCWGG 3 cut(s) 227, 713, 1122
MvnI CGCG 3 cut(s) 392, 483, 589
MwoI GCNNNNNNNGC 5 cut(s) 55, 127, 178, 227, 1229
NciI CCSGG 4 cut(s) 540, 541, 727, 728
NdeI CATATG 2 cut(s) 798, 1542
NdeII GATC 9 cut(s) 25, 79, 190, 286, 823, 844, 857, 1495, 1616
NlaIII CATG 6 cut(s) 502, 756, 832, 909, 1154, 1163
NlaIV GGNNCC 5 cut(s) 192, 288, 376, 1066, 1173
NsbI TGCGCA 1 cut(s) 120
NspI RCATGY 1 cut(s) 909
OliI CACNNNNGTG 3 cut(s) 44, 281, 1059
PaeR7I CTCGAG 2 cut(s) 1088, 1297
PagI TCATGA 1 cut(s) 498
PceI AGGCCT 1 cut(s) 1570
PciI ACATGT 1 cut(s) 905
PcsI WCGNNNNNNNCGW 1 cut(s) 1612
PdmI GAANNNNTTC 1 cut(s) 809
PfeI GAWTC 3 cut(s) 159, 850, 1030
PkrI GCNGC 8 cut(s) 223, 262, 359, 517, 1234, 1410, 1441, 1548
PleI GAGTC 1 cut(s) 1545
PmaCI CACGTG 2 cut(s) 929, 1059
PmlI CACGTG 2 cut(s) 929, 1059
PpsI GAGTC 1 cut(s) 1545
Ppu21I YACGTR 3 cut(s) 929, 1059, 1307
PpuMI RGGWCCY 1 cut(s) 593
PscI ACATGT 1 cut(s) 905
Psp5II RGGWCCY 1 cut(s) 593
Psp6I CCWGG 3 cut(s) 225, 711, 1120
PspCI CACGTG 2 cut(s) 929, 1059
PspGI CCWGG 3 cut(s) 225, 711, 1120
PspN4I GGNNCC 5 cut(s) 192, 288, 376, 1066, 1173
PspPI GGNCC 4 cut(s) 593, 987, 1065, 1283
PspPPI RGGWCCY 1 cut(s) 593
PspXI VCTCGAGB 1 cut(s) 1088
PstNI CAGNNNCTG 1 cut(s) 518
PsuI RGATCY 3 cut(s) 190, 286, 857
PvuII CAGCTG 3 cut(s) 263, 515, 651
RsaI GTAC 6 cut(s) 267, 376, 706, 939, 1129, 1527
RsaNI GTAC 6 cut(s) 266, 375, 705, 938, 1128, 1526
RseI CAYNNNNRTG 4 cut(s) 44, 281, 997, 1059
SaqAI TTAA 4 cut(s) 237, 474, 747, 777
SatI GCNGC 8 cut(s) 222, 261, 358, 516, 1233, 1409, 1440, 1547
Sau3AI GATC 9 cut(s) 25, 79, 190, 286, 823, 844, 857, 1495, 1616
Sau96I GGNCC 4 cut(s) 593, 987, 1065, 1283
SchI GAGTC 1 cut(s) 1546
ScrFI CCNGG 7 cut(s) 227, 540, 541, 713, 727, 728, 1122
SfaNI GCATC 3 cut(s) 247, 886, 913
SfcI CTRYAG 1 cut(s) 740
Sfr274I CTCGAG 2 cut(s) 1088, 1297
SinI GGWCC 4 cut(s) 593, 987, 1065, 1283
SlaI CTCGAG 2 cut(s) 1088, 1297
SmaI CCCGGG 2 cut(s) 541, 728
SmiMI CAYNNNNRTG 4 cut(s) 44, 281, 997, 1059
SmlI CTYRAG 7 cut(s) 473, 1080, 1088, 1208, 1224, 1297, 1478
SmoI CTYRAG 7 cut(s) 473, 1080, 1088, 1208, 1224, 1297, 1478
SpeI ACTAGT 1 cut(s) 1522
Sse9I AATT 5 cut(s) 212, 494, 1050, 1214, 1466
SseBI AGGCCT 1 cut(s) 1570
SsiI CCGC 3 cut(s) 230, 392, 1235
SspI AATATT 1 cut(s) 506
SspMI CTAG 2 cut(s) 614, 1523
StuI AGGCCT 1 cut(s) 1570
StyD4I CCNGG 7 cut(s) 225, 538, 539, 711, 725, 726, 1120
TaaI ACNGT 8 cut(s) 43, 139, 434, 869, 1316, 1350, 1372, 1530
TaiI ACGT 4 cut(s) 896, 931, 1061, 1309
TaqI TCGA 3 cut(s) 819, 1089, 1298
TasI AATT 5 cut(s) 212, 494, 1050, 1214, 1466
TatI WGTACW 2 cut(s) 704, 1525
TfiI GAWTC 3 cut(s) 159, 850, 1030
Tru1I TTAA 4 cut(s) 237, 474, 747, 777
Tru9I TTAA 4 cut(s) 237, 474, 747, 777
TseI GCWGC 8 cut(s) 221, 260, 357, 515, 1232, 1408, 1439, 1546
TspDTI ATGAA 8 cut(s) 263, 401, 487, 515, 842, 845, 1440, 1517
TspGWI ACGGA 1 cut(s) 1621
TspMI CCCGGG 2 cut(s) 539, 726
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 4 cut(s) 593, 987, 1065, 1283
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 909
XcmI CCANNNNNNNNNTGG 2 cut(s) 368, 1335
XhoI CTCGAG 2 cut(s) 1088, 1297
XmaI CCCGGG 2 cut(s) 539, 726
XmnI GAANNNNTTC 1 cut(s) 809
XspI CTAG 2 cut(s) 614, 1523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.